RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 HIGD2BQ4VC39 106 aa17.8■□□□□ 0.44
MSX1-201ENST00000382723 MEIG1Q5JSS6 88 aa17.8■□□□□ 0.44
MSX1-201ENST00000382723 C15orf56Q8N910 161 aa17.8■□□□□ 0.44
MSX1-201ENST00000382723 A0A0U1RRA0 63 aa17.79■□□□□ 0.44
MSX1-201ENST00000382723 LITAFQ99732 161 aa17.78■□□□□ 0.44
MSX1-201ENST00000382723 TMEM238C9JI98 176 aa17.78■□□□□ 0.44
MSX1-201ENST00000382723 M0R2N4 97 aa17.78■□□□□ 0.44
MSX1-201ENST00000382723 GCSHP23434 173 aa17.78■□□□□ 0.44
MSX1-201ENST00000382723 BVES-AS1Q5T3Y7 98 aa17.78■□□□□ 0.44
MSX1-201ENST00000382723 ADAMTSL4-AS1Q5T5F5 129 aa17.77■□□□□ 0.44
MSX1-201ENST00000382723 LY6G6CO95867 125 aa17.76■□□□□ 0.43
MSX1-201ENST00000382723 SPANXB1Q9NS25 103 aaPredicted RBP17.76■□□□□ 0.43
MSX1-201ENST00000382723 COX11Q9Y6N1 276 aa17.76■□□□□ 0.43
MSX1-201ENST00000382723 ZNF561-AS1K7EIQ3 104 aa17.76■□□□□ 0.43
MSX1-201ENST00000382723 SFTA2Q6UW10 78 aa17.76■□□□□ 0.43
MSX1-201ENST00000382723 TM2D2Q9BX73 214 aa17.76■□□□□ 0.43
MSX1-201ENST00000382723 CXCL5P42830 114 aa17.75■□□□□ 0.43
MSX1-201ENST00000382723 CIRBPQ14011 172 aaKnown RBP17.75■□□□□ 0.43
MSX1-201ENST00000382723 TAL2Q16559 108 aa17.75■□□□□ 0.43
MSX1-201ENST00000382723 VPS13DQ5THJ4 4388 aa17.74■□□□□ 0.43
MSX1-201ENST00000382723 SMIM13P0DJ93 91 aa17.74■□□□□ 0.43
MSX1-201ENST00000382723 CEND1Q8N111 149 aa17.74■□□□□ 0.43
MSX1-201ENST00000382723 DAND5Q8N907 189 aa17.74■□□□□ 0.43
MSX1-201ENST00000382723 TIMM17BO60830 172 aa17.73■□□□□ 0.43
MSX1-201ENST00000382723 UNQ6190/PRO20217Q6UXQ8 127 aa17.72■□□□□ 0.43
MSX1-201ENST00000382723 NTN5Q8WTR8 489 aaPredicted RBP17.72■□□□□ 0.43
MSX1-201ENST00000382723 LECT2O14960 151 aa17.72■□□□□ 0.43
MSX1-201ENST00000382723 PSCAO43653 123 aa17.72■□□□□ 0.43
MSX1-201ENST00000382723 C10orf25Q5T742 122 aa17.72■□□□□ 0.43
MSX1-201ENST00000382723 USP17L23D6RBM5 183 aa17.71■□□□□ 0.43
MSX1-201ENST00000382723 PFN2P35080 140 aa17.71■□□□□ 0.43
MSX1-201ENST00000382723 FXYD2P54710 66 aa17.71■□□□□ 0.43
MSX1-201ENST00000382723 NPC2P61916 151 aa17.7■□□□□ 0.42
MSX1-201ENST00000382723 ERG28Q9UKR5 140 aa17.7■□□□□ 0.42
MSX1-201ENST00000382723 GVQW2A0A096LPI5 108 aaPredicted RBP17.69■□□□□ 0.42
MSX1-201ENST00000382723 PTTG1IPP53801 180 aa17.69■□□□□ 0.42
MSX1-201ENST00000382723 LINC00158P58513 81 aa17.69■□□□□ 0.42
MSX1-201ENST00000382723 Q6ZVH6 145 aa17.69■□□□□ 0.42
MSX1-201ENST00000382723 LINC00476Q8WZB0 136 aa17.69■□□□□ 0.42
MSX1-201ENST00000382723 SPANXDQ9BXN6 97 aa17.69■□□□□ 0.42
MSX1-201ENST00000382723 SPANXCQ9NY87 97 aa17.69■□□□□ 0.42
MSX1-201ENST00000382723 C9orf116Q5BN46 136 aaPredicted RBP17.68■□□□□ 0.42
MSX1-201ENST00000382723 MUSTN1Q8IVN3 82 aa17.68■□□□□ 0.42
MSX1-201ENST00000382723 CAMK2N2Q96S95 79 aa17.68■□□□□ 0.42
MSX1-201ENST00000382723 MIR7-3HGQ8N6C7 128 aa17.64■□□□□ 0.42
MSX1-201ENST00000382723 C2orf48Q96LS8 159 aa17.64■□□□□ 0.41
MSX1-201ENST00000382723 WFDC2Q14508 124 aa17.63■□□□□ 0.41
MSX1-201ENST00000382723 TAX1BP3O14907 124 aa17.62■□□□□ 0.41
MSX1-201ENST00000382723 EIF4EBP3O60516 100 aaPredicted RBP17.62■□□□□ 0.41
MSX1-201ENST00000382723 Q6ZR54 194 aa17.62■□□□□ 0.41
MSX1-201ENST00000382723 Q6ZRU5 148 aa17.62■□□□□ 0.41
MSX1-201ENST00000382723 C6orf48Q9UBA6 75 aa17.62■□□□□ 0.41
MSX1-201ENST00000382723 LINC00308Q8TCZ7 52 aa17.6■□□□□ 0.41
MSX1-201ENST00000382723 NHP2Q9NX24 153 aaKnown RBP17.6■□□□□ 0.41
MSX1-201ENST00000382723 DNAH10Q8IVF4 4471 aa17.6■□□□□ 0.41
MSX1-201ENST00000382723 Q6ZRN7 208 aaPredicted RBP17.6■□□□□ 0.41
MSX1-201ENST00000382723 A6NDN8 102 aa17.59■□□□□ 0.41
MSX1-201ENST00000382723 IFITM1P13164 125 aa17.59■□□□□ 0.41
MSX1-201ENST00000382723 RPL24P83731 157 aaKnown RBP17.59■□□□□ 0.41
MSX1-201ENST00000382723 SYCNQ0VAF6 134 aa17.59■□□□□ 0.41
MSX1-201ENST00000382723 A4D1N5 150 aa17.58■□□□□ 0.4
MSX1-201ENST00000382723 COX17Q14061 63 aa17.58■□□□□ 0.4
MSX1-201ENST00000382723 SOSTDC1Q6X4U4 206 aa17.58■□□□□ 0.4
MSX1-201ENST00000382723 KMT2AQ03164 3969 aa17.58■□□□□ 0.4
MSX1-201ENST00000382723 TRBV30A0A0K0K1B3 111 aa17.57■□□□□ 0.4
MSX1-201ENST00000382723 TMEM238LA0A1B0GVL6 79 aa17.57■□□□□ 0.4
MSX1-201ENST00000382723 A6NJY4 79 aa17.57■□□□□ 0.4
MSX1-201ENST00000382723 F8WDY8 70 aa17.56■□□□□ 0.4
MSX1-201ENST00000382723 K7ERJ3 54 aa17.56■□□□□ 0.4
MSX1-201ENST00000382723 SLPIP03973 132 aa17.56■□□□□ 0.4
MSX1-201ENST00000382723 ALMS1Q8TCU4 4167 aa17.54■□□□□ 0.4
MSX1-201ENST00000382723 CARD19Q96LW7 228 aa17.54■□□□□ 0.4
MSX1-201ENST00000382723 COPS9Q8WXC6 57 aa17.53■□□□□ 0.4
MSX1-201ENST00000382723 LRCOL1A6NCL2 159 aa17.51■□□□□ 0.39
MSX1-201ENST00000382723 RAB37Q96AX2 223 aa17.51■□□□□ 0.39
MSX1-201ENST00000382723 C1orf134Q5TEV5 83 aa17.5■□□□□ 0.39
MSX1-201ENST00000382723 CFC1BP0CG36 223 aa17.49■□□□□ 0.39
MSX1-201ENST00000382723 CFC1P0CG37 223 aa17.49■□□□□ 0.39
MSX1-201ENST00000382723 SND1-IT1Q9HBX3 110 aa17.49■□□□□ 0.39
MSX1-201ENST00000382723 C14orf177Q52M58 125 aa17.48■□□□□ 0.39
MSX1-201ENST00000382723 IGLV2-33A0A075B6J2 118 aaPredicted RBP17.47■□□□□ 0.39
MSX1-201ENST00000382723 TRAV16A0A0A6YYK6 109 aaPredicted RBP17.47■□□□□ 0.39
MSX1-201ENST00000382723 A0A1B0GWB2 263 aa17.47■□□□□ 0.39
MSX1-201ENST00000382723 NDUFC2-KCTD14E9PQ53 114 aa17.44■□□□□ 0.38
MSX1-201ENST00000382723 UBE2V1Q13404 147 aa17.44■□□□□ 0.38
MSX1-201ENST00000382723 PPDPFQ9H3Y8 114 aa17.43■□□□□ 0.38
MSX1-201ENST00000382723 XAGE1AQ9HD64 81 aa17.43■□□□□ 0.38
MSX1-201ENST00000382723 VAMP3Q15836 100 aa17.43■□□□□ 0.38
MSX1-201ENST00000382723 RNF151Q2KHN1 245 aa17.43■□□□□ 0.38
MSX1-201ENST00000382723 GAGE2EQ4V326 116 aa17.42■□□□□ 0.38
MSX1-201ENST00000382723 GAGE2DQ9UEU5 116 aa17.42■□□□□ 0.38
MSX1-201ENST00000382723 DNAH6Q9C0G6 4158 aa17.41■□□□□ 0.38
MSX1-201ENST00000382723 Q6ZRP5 223 aa17.41■□□□□ 0.38
MSX1-201ENST00000382723 A0A0B4J2C4 111 aa17.41■□□□□ 0.38
MSX1-201ENST00000382723 RPL18AQ02543 176 aaKnown RBP17.41■□□□□ 0.38
MSX1-201ENST00000382723 A0A087WTM6 91 aa17.4■□□□□ 0.38
MSX1-201ENST00000382723 LOC107984156A0A0G2JMH3 177 aa17.4■□□□□ 0.38
MSX1-201ENST00000382723 CNBPP62633 177 aaKnown RBP17.4■□□□□ 0.38
MSX1-201ENST00000382723 ARL17AQ8IVW1 177 aa17.4■□□□□ 0.38
MSX1-201ENST00000382723 C9orf118A6NHY6 69 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms