RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 LYSTQ99698 3801 aa12.42□□□□□ -0.42
CLN3-204ENST00000357857 TTC32Q5I0X7 151 aa12.42□□□□□ -0.42
CLN3-204ENST00000357857 TM2D2Q9BX73 214 aa12.42□□□□□ -0.42
CLN3-204ENST00000357857 C2orf82Q6UX34 121 aa12.41□□□□□ -0.42
CLN3-204ENST00000357857 NBDYA0A0U1RRE5 68 aa12.4□□□□□ -0.42
CLN3-204ENST00000357857 ADAMTSL4-AS1Q5T5F5 129 aa12.4□□□□□ -0.42
CLN3-204ENST00000357857 C15orf56Q8N910 161 aa12.4□□□□□ -0.42
CLN3-204ENST00000357857 SPANXDQ9BXN6 97 aa12.4□□□□□ -0.42
CLN3-204ENST00000357857 SPANXCQ9NY87 97 aa12.4□□□□□ -0.42
CLN3-204ENST00000357857 COX11Q9Y6N1 276 aa12.4□□□□□ -0.42
CLN3-204ENST00000357857 FXYD2P54710 66 aa12.4□□□□□ -0.43
CLN3-204ENST00000357857 DNAH1Q9P2D7 4330 aa12.39□□□□□ -0.43
CLN3-204ENST00000357857 C6orf223Q8N319 242 aa12.39□□□□□ -0.43
CLN3-204ENST00000357857 LINC00526Q96FQ7 95 aa12.39□□□□□ -0.43
CLN3-204ENST00000357857 A0A0U1RRA0 63 aa12.38□□□□□ -0.43
CLN3-204ENST00000357857 SMIM13P0DJ93 91 aa12.38□□□□□ -0.43
CLN3-204ENST00000357857 PTTG1IPP53801 180 aa12.38□□□□□ -0.43
CLN3-204ENST00000357857 HIGD2BQ4VC39 106 aa12.38□□□□□ -0.43
CLN3-204ENST00000357857 CASC10Q5T4H9 136 aa12.38□□□□□ -0.43
CLN3-204ENST00000357857 Q6ZVH6 145 aa12.38□□□□□ -0.43
CLN3-204ENST00000357857 ZNF561-AS1K7EIQ3 104 aa12.37□□□□□ -0.43
CLN3-204ENST00000357857 NTN5Q8WTR8 489 aaPredicted RBP12.37□□□□□ -0.43
CLN3-204ENST00000357857 VPS13DQ5THJ4 4388 aa12.37□□□□□ -0.43
CLN3-204ENST00000357857 C3orf84H3BNL1 204 aa12.37□□□□□ -0.43
CLN3-204ENST00000357857 LBHQ53QV2 105 aaPredicted RBP12.37□□□□□ -0.43
CLN3-204ENST00000357857 GVQW2A0A096LPI5 108 aaPredicted RBP12.36□□□□□ -0.43
CLN3-204ENST00000357857 COL5A1-AS1Q5SY13 56 aa12.36□□□□□ -0.43
CLN3-204ENST00000357857 MUSTN1Q8IVN3 82 aa12.36□□□□□ -0.43
CLN3-204ENST00000357857 DAND5Q8N907 189 aa12.36□□□□□ -0.43
CLN3-204ENST00000357857 ERG28Q9UKR5 140 aa12.36□□□□□ -0.43
CLN3-204ENST00000357857 A6NDN8 102 aa12.35□□□□□ -0.43
CLN3-204ENST00000357857 UNQ6190/PRO20217Q6UXQ8 127 aa12.35□□□□□ -0.43
CLN3-204ENST00000357857 LINC00158P58513 81 aa12.34□□□□□ -0.43
CLN3-204ENST00000357857 TMEM238LA0A1B0GVL6 79 aa12.34□□□□□ -0.43
CLN3-204ENST00000357857 A6NJY4 79 aa12.34□□□□□ -0.43
CLN3-204ENST00000357857 IFITM1P13164 125 aa12.34□□□□□ -0.43
CLN3-204ENST00000357857 PFN2P35080 140 aa12.34□□□□□ -0.43
CLN3-204ENST00000357857 C10orf25Q5T742 122 aa12.34□□□□□ -0.43
CLN3-204ENST00000357857 USP17L23D6RBM5 183 aa12.33□□□□□ -0.44
CLN3-204ENST00000357857 NPC2P61916 151 aa12.33□□□□□ -0.44
CLN3-204ENST00000357857 C2orf48Q96LS8 159 aa12.33□□□□□ -0.44
CLN3-204ENST00000357857 RPL24P83731 157 aaKnown RBP12.32□□□□□ -0.44
CLN3-204ENST00000357857 MIR7-3HGQ8N6C7 128 aa12.32□□□□□ -0.44
CLN3-204ENST00000357857 CAMK2N2Q96S95 79 aa12.32□□□□□ -0.44
CLN3-204ENST00000357857 NHP2Q9NX24 153 aaKnown RBP12.32□□□□□ -0.44
CLN3-204ENST00000357857 PSCAO43653 123 aa12.31□□□□□ -0.44
CLN3-204ENST00000357857 F8WDY8 70 aa12.31□□□□□ -0.44
CLN3-204ENST00000357857 COX17Q14061 63 aa12.31□□□□□ -0.44
CLN3-204ENST00000357857 LINC00308Q8TCZ7 52 aa12.31□□□□□ -0.44
CLN3-204ENST00000357857 COPS9Q8WXC6 57 aa12.31□□□□□ -0.44
CLN3-204ENST00000357857 M0R2N4 97 aa12.3□□□□□ -0.44
CLN3-204ENST00000357857 C9orf116Q5BN46 136 aaPredicted RBP12.3□□□□□ -0.44
CLN3-204ENST00000357857 A4D1N5 150 aa12.29□□□□□ -0.44
CLN3-204ENST00000357857 LY6G6CO95867 125 aa12.29□□□□□ -0.44
CLN3-204ENST00000357857 C6orf48Q9UBA6 75 aa12.29□□□□□ -0.44
CLN3-204ENST00000357857 TRBV30A0A0K0K1B3 111 aa12.28□□□□□ -0.44
CLN3-204ENST00000357857 EIF4EBP3O60516 100 aaPredicted RBP12.28□□□□□ -0.44
CLN3-204ENST00000357857 SOSTDC1Q6X4U4 206 aa12.28□□□□□ -0.44
CLN3-204ENST00000357857 LINC00476Q8WZB0 136 aa12.28□□□□□ -0.44
CLN3-204ENST00000357857 LECT2O14960 151 aa12.28□□□□□ -0.44
CLN3-204ENST00000357857 Q6ZRU5 148 aa12.28□□□□□ -0.44
CLN3-204ENST00000357857 A0A1B0GWB2 263 aa12.27□□□□□ -0.45
CLN3-204ENST00000357857 K7ERJ3 54 aa12.27□□□□□ -0.45
CLN3-204ENST00000357857 SYCNQ0VAF6 134 aa12.26□□□□□ -0.45
CLN3-204ENST00000357857 Q6ZR54 194 aa12.26□□□□□ -0.45
CLN3-204ENST00000357857 PPDPFQ9H3Y8 114 aa12.26□□□□□ -0.45
CLN3-204ENST00000357857 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.25□□□□□ -0.45
CLN3-204ENST00000357857 TAX1BP3O14907 124 aa12.25□□□□□ -0.45
CLN3-204ENST00000357857 Q6ZRN7 208 aaPredicted RBP12.25□□□□□ -0.45
CLN3-204ENST00000357857 CFC1BP0CG36 223 aa12.24□□□□□ -0.45
CLN3-204ENST00000357857 CFC1P0CG37 223 aa12.24□□□□□ -0.45
CLN3-204ENST00000357857 WFDC2Q14508 124 aa12.24□□□□□ -0.45
CLN3-204ENST00000357857 RAB37Q96AX2 223 aa12.24□□□□□ -0.45
CLN3-204ENST00000357857 CARD19Q96LW7 228 aa12.23□□□□□ -0.45
CLN3-204ENST00000357857 ALMS1Q8TCU4 4167 aa12.22□□□□□ -0.45
CLN3-204ENST00000357857 A0A0B4J2C4 111 aa12.21□□□□□ -0.45
CLN3-204ENST00000357857 SLPIP03973 132 aa12.21□□□□□ -0.45
CLN3-204ENST00000357857 C14orf177Q52M58 125 aa12.21□□□□□ -0.45
CLN3-204ENST00000357857 SND1-IT1Q9HBX3 110 aa12.21□□□□□ -0.45
CLN3-204ENST00000357857 LOC107984156A0A0G2JMH3 177 aa12.2□□□□□ -0.46
CLN3-204ENST00000357857 RNF151Q2KHN1 245 aa12.2□□□□□ -0.46
CLN3-204ENST00000357857 ARL17AQ8IVW1 177 aa12.2□□□□□ -0.46
CLN3-204ENST00000357857 DNAH10Q8IVF4 4471 aa12.2□□□□□ -0.46
CLN3-204ENST00000357857 DNAH6Q9C0G6 4158 aa12.19□□□□□ -0.46
CLN3-204ENST00000357857 LRCOL1A6NCL2 159 aa12.18□□□□□ -0.46
CLN3-204ENST00000357857 PRO1854Q9UHT4 67 aa12.18□□□□□ -0.46
CLN3-204ENST00000357857 A0A1B0GV90 55 aa12.17□□□□□ -0.46
CLN3-204ENST00000357857 C9orf118A6NHY6 69 aa12.17□□□□□ -0.46
CLN3-204ENST00000357857 NDUFC2-KCTD14E9PQ53 114 aa12.17□□□□□ -0.46
CLN3-204ENST00000357857 C1orf134Q5TEV5 83 aa12.16□□□□□ -0.46
CLN3-204ENST00000357857 PGPEP1Q9NXJ5 209 aa12.15□□□□□ -0.46
CLN3-204ENST00000357857 KMT2AQ03164 3969 aa12.15□□□□□ -0.47
CLN3-204ENST00000357857 H3BUT2 72 aa12.14□□□□□ -0.47
CLN3-204ENST00000357857 CNBPP62633 177 aaKnown RBP12.14□□□□□ -0.47
CLN3-204ENST00000357857 NAA38Q9BRA0 125 aaKnown RBP12.14□□□□□ -0.47
CLN3-204ENST00000357857 TLX1NBP0CAT3 122 aa12.14□□□□□ -0.47
CLN3-204ENST00000357857 TSPAN13O95857 204 aa12.13□□□□□ -0.47
CLN3-204ENST00000357857 Q6ZRP5 223 aa12.13□□□□□ -0.47
CLN3-204ENST00000357857 XAGE1AQ9HD64 81 aa12.13□□□□□ -0.47
CLN3-204ENST00000357857 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms