RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CDKN2A-AS1Q9UH64 79 aa6.21□□□□□ -1.42
USP4-202ENST00000351842 LINC00959A0A1B0GUT2 108 aa6.21□□□□□ -1.42
USP4-202ENST00000351842 H3BMG7 143 aa6.21□□□□□ -1.42
USP4-202ENST00000351842 APOMO95445 188 aa6.21□□□□□ -1.42
USP4-202ENST00000351842 SS18Q15532 418 aa6.21□□□□□ -1.42
USP4-202ENST00000351842 TRBV20-1A0A075B6N2 111 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 NMUP48645 174 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 CEND1Q8N111 149 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 FRAS1Q86XX4 4008 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 F8VRH5 84 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 DNAH10OSP0CZ25 163 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 LINC01620Q4KN68 170 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 TIMM17AQ99595 171 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 NBDYA0A0U1RRE5 68 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 FXYD2P54710 66 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 FOXI1Q12951 378 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 LINC01556Q5JQF7 62 aa6.2□□□□□ -1.42
USP4-202ENST00000351842 VPS13DQ5THJ4 4388 aa6.19□□□□□ -1.42
USP4-202ENST00000351842 E9PLD3 99 aa6.19□□□□□ -1.42
USP4-202ENST00000351842 PAPPA-AS1Q5QFB9 102 aa6.19□□□□□ -1.42
USP4-202ENST00000351842 LINC00242Q5T6M2 205 aa6.19□□□□□ -1.42
USP4-202ENST00000351842 MAPKAPK5-AS1Q8N8E1 139 aa6.18□□□□□ -1.42
USP4-202ENST00000351842 K7ERJ3 54 aa6.18□□□□□ -1.42
USP4-202ENST00000351842 SACSQ9NZJ4 4579 aa6.18□□□□□ -1.42
USP4-202ENST00000351842 NDUFV3P56181 108 aaKnown RBP6.18□□□□□ -1.42
USP4-202ENST00000351842 A0A1B0GUV1 79 aa6.17□□□□□ -1.42
USP4-202ENST00000351842 GCSHP23434 173 aa6.17□□□□□ -1.42
USP4-202ENST00000351842 UBE2D1P51668 147 aa6.17□□□□□ -1.42
USP4-202ENST00000351842 C2orf82Q6UX34 121 aa6.17□□□□□ -1.42
USP4-202ENST00000351842 PYGO1Q9Y3Y4 419 aa6.17□□□□□ -1.42
USP4-202ENST00000351842 IGLV4-69A0A075B6H9 119 aa6.16□□□□□ -1.42
USP4-202ENST00000351842 MEIG1Q5JSS6 88 aa6.16□□□□□ -1.42
USP4-202ENST00000351842 C6orf223Q8N319 242 aa6.16□□□□□ -1.42
USP4-202ENST00000351842 TTC32Q5I0X7 151 aa6.16□□□□□ -1.42
USP4-202ENST00000351842 PRO0461Q9UI25 63 aa6.16□□□□□ -1.42
USP4-202ENST00000351842 COX7A2LO14548 114 aa6.16□□□□□ -1.42
USP4-202ENST00000351842 DYNC2H1Q8NCM8 4307 aaKnown RBP6.15□□□□□ -1.42
USP4-202ENST00000351842 MYMXA0A1B0GTQ4 84 aa6.15□□□□□ -1.42
USP4-202ENST00000351842 GAGE2BQ13066 116 aa6.15□□□□□ -1.42
USP4-202ENST00000351842 GAGE2EQ4V326 116 aa6.15□□□□□ -1.42
USP4-202ENST00000351842 C10orf126Q8N4M7 172 aa6.15□□□□□ -1.42
USP4-202ENST00000351842 AMELXQ99217 191 aa6.15□□□□□ -1.42
USP4-202ENST00000351842 GAGE2DQ9UEU5 116 aa6.15□□□□□ -1.42
USP4-202ENST00000351842 H7C423 109 aa6.15□□□□□ -1.43
USP4-202ENST00000351842 ZNF22P17026 224 aaPredicted RBP6.15□□□□□ -1.43
USP4-202ENST00000351842 NPC2P61916 151 aa6.15□□□□□ -1.43
USP4-202ENST00000351842 MIAQ16674 131 aa6.15□□□□□ -1.43
USP4-202ENST00000351842 IFITM1P13164 125 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 NFE4Q86UQ8 179 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 NHP2Q9NX24 153 aaKnown RBP6.14□□□□□ -1.43
USP4-202ENST00000351842 DNAH2Q9P225 4427 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 TIRAPP58753 221 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 C6orf226Q5I0X4 101 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 C1orf134Q5TEV5 83 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 TIMM21Q9BVV7 248 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 IBA57-AS1B1ANH7 110 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 PRSS2P07478 247 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 MRPS36P82909 103 aaKnown RBP6.14□□□□□ -1.43
USP4-202ENST00000351842 UPK3BQ9BT76 320 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 TMEM126AQ9H061 195 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 RYR3Q15413 4870 aa6.14□□□□□ -1.43
USP4-202ENST00000351842 LOC107984640A0A0U1RRK4 108 aa6.13□□□□□ -1.43
USP4-202ENST00000351842 USP17L23D6RBM5 183 aa6.13□□□□□ -1.43
USP4-202ENST00000351842 PFN2P35080 140 aa6.13□□□□□ -1.43
USP4-202ENST00000351842 HERVK_113P63121 156 aa6.13□□□□□ -1.43
USP4-202ENST00000351842 C9orf116Q5BN46 136 aaPredicted RBP6.13□□□□□ -1.43
USP4-202ENST00000351842 ZNF561-AS1K7EIQ3 104 aa6.13□□□□□ -1.43
USP4-202ENST00000351842 DAND5Q8N907 189 aa6.13□□□□□ -1.43
USP4-202ENST00000351842 CD164L2Q6UWJ8 174 aa6.12□□□□□ -1.43
USP4-202ENST00000351842 PRR34Q9NV39 138 aa6.12□□□□□ -1.43
USP4-202ENST00000351842 IGHV3OR16-9A0A0B4J2B5 98 aa6.12□□□□□ -1.43
USP4-202ENST00000351842 SPAG11BQ08648 103 aa6.12□□□□□ -1.43
USP4-202ENST00000351842 TSPEAR-AS2P59090 65 aa6.11□□□□□ -1.43
USP4-202ENST00000351842 HAMPP81172 84 aa6.11□□□□□ -1.43
USP4-202ENST00000351842 TNP2Q05952 138 aa6.11□□□□□ -1.43
USP4-202ENST00000351842 FAM19A5Q7Z5A7 132 aaPredicted RBP6.11□□□□□ -1.43
USP4-202ENST00000351842 DPH3Q96FX2 82 aa6.11□□□□□ -1.43
USP4-202ENST00000351842 TINCRA0A1B0GVN0 87 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 SNCGO76070 127 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 LGALS3P17931 250 aaKnown RBP6.1□□□□□ -1.43
USP4-202ENST00000351842 HERVK_113P61574 105 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 SCGB1D4Q6XE38 83 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 LCE6AA0A183 80 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 SMIM1B2RUZ4 78 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 SMCPP49901 116 aaPredicted RBP6.1□□□□□ -1.43
USP4-202ENST00000351842 UNQ6190/PRO20217Q6UXQ8 127 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 PPDPFLQ8WWR9 84 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 TRAV8-4A0A0B4J246 113 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 IGKV2-24A0A0C4DH68 120 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 C10orf25Q5T742 122 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 RMI2Q96E14 147 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 CARD19Q96LW7 228 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 CAMK2N2Q96S95 79 aa6.1□□□□□ -1.43
USP4-202ENST00000351842 ZNF815PA8K554 130 aa6.09□□□□□ -1.43
USP4-202ENST00000351842 HIST1H4GQ99525 98 aa6.09□□□□□ -1.43
USP4-202ENST00000351842 F8WDY8 70 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 J3QQQ9 107 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 COX7B2Q8TF08 81 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 LINC01600Q96MT4 127 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 NDUFA12Q9UI09 145 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms