RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 RPL35AP18077 110 aaKnown RBP15.67■□□□□ 0.1
TRIM28-202ENST00000341753 FASNP49327 2511 aaKnown RBP15.67■□□□□ 0.1
TRIM28-202ENST00000341753 TRGV4A0A0C4DH28 118 aa15.66■□□□□ 0.1
TRIM28-202ENST00000341753 IGHV3OR16-9A0A0B4J2B5 98 aa15.66■□□□□ 0.1
TRIM28-202ENST00000341753 HIST1H4AP62805 103 aaKnown RBP15.66■□□□□ 0.1
TRIM28-202ENST00000341753 NOTCH2Q04721 2471 aa15.65■□□□□ 0.1
TRIM28-202ENST00000341753 UNC79Q9P2D8 2635 aa15.65■□□□□ 0.1
TRIM28-202ENST00000341753 PLAC8L1A1L4L8 177 aa15.65■□□□□ 0.1
TRIM28-202ENST00000341753 GIG44P09565 113 aaPredicted RBP15.65■□□□□ 0.1
TRIM28-202ENST00000341753 KRTAP1-1Q07627 177 aa15.65■□□□□ 0.1
TRIM28-202ENST00000341753 OVOL2Q9BRP0 275 aa15.65■□□□□ 0.1
TRIM28-202ENST00000341753 A0A1B0GX51 115 aa15.64■□□□□ 0.09
TRIM28-202ENST00000341753 ATOX1O00244 68 aa15.64■□□□□ 0.09
TRIM28-202ENST00000341753 H0YGX0 51 aa15.63■□□□□ 0.09
TRIM28-202ENST00000341753 CFAP161Q6P656 301 aa15.63■□□□□ 0.09
TRIM28-202ENST00000341753 TMEM86BQ8N661 226 aa15.62■□□□□ 0.09
TRIM28-202ENST00000341753 RPL18AQ02543 176 aaKnown RBP15.61■□□□□ 0.09
TRIM28-202ENST00000341753 IBA57-AS1B1ANH7 110 aa15.61■□□□□ 0.09
TRIM28-202ENST00000341753 PRR3P79522 188 aaKnown RBP15.61■□□□□ 0.09
TRIM28-202ENST00000341753 LINC01006Q8NI28 216 aa15.61■□□□□ 0.09
TRIM28-202ENST00000341753 HECTD1Q9ULT8 2610 aa15.61■□□□□ 0.09
TRIM28-202ENST00000341753 TRBV6-8A0A0A6YYG3 113 aa15.6■□□□□ 0.09
TRIM28-202ENST00000341753 CLPSL2Q6UWE3 100 aa15.6■□□□□ 0.09
TRIM28-202ENST00000341753 OBSCN-AS1Q96MR7 158 aa15.6■□□□□ 0.09
TRIM28-202ENST00000341753 SMR3AQ99954 134 aa15.6■□□□□ 0.09
TRIM28-202ENST00000341753 C6orf226Q5I0X4 101 aa15.59■□□□□ 0.09
TRIM28-202ENST00000341753 A0A087WZ39 114 aa15.59■□□□□ 0.09
TRIM28-202ENST00000341753 XCL1P47992 114 aa15.59■□□□□ 0.09
TRIM28-202ENST00000341753 FN1P02751 2386 aaKnown RBP15.59■□□□□ 0.09
TRIM28-202ENST00000341753 CRYGAP11844 174 aa15.59■□□□□ 0.09
TRIM28-202ENST00000341753 TRBV6-4A0A1B0GX49 114 aa15.58■□□□□ 0.08
TRIM28-202ENST00000341753 Q6JHZ5 121 aa15.58■□□□□ 0.08
TRIM28-202ENST00000341753 LINC01561Q8N1V8 128 aa15.58■□□□□ 0.08
TRIM28-202ENST00000341753 SS18Q15532 418 aa15.57■□□□□ 0.08
TRIM28-202ENST00000341753 C16orf74Q96GX8 76 aa15.57■□□□□ 0.08
TRIM28-202ENST00000341753 TRAV25A0A0B4J276 109 aa15.56■□□□□ 0.08
TRIM28-202ENST00000341753 WFDC9Q8NEX5 89 aa15.56■□□□□ 0.08
TRIM28-202ENST00000341753 LINC00959A0A1B0GUT2 108 aa15.55■□□□□ 0.08
TRIM28-202ENST00000341753 ORMDL1Q9P0S3 153 aa15.55■□□□□ 0.08
TRIM28-202ENST00000341753 FHL2Q14192 279 aa15.55■□□□□ 0.08
TRIM28-202ENST00000341753 HILS1P60008 231 aa15.53■□□□□ 0.08
TRIM28-202ENST00000341753 KIR2DL5BQ8NHK3 375 aa15.53■□□□□ 0.08
TRIM28-202ENST00000341753 HIVEP2P31629 2446 aa15.53■□□□□ 0.08
TRIM28-202ENST00000341753 USP17L23D6RBM5 183 aa15.53■□□□□ 0.08
TRIM28-202ENST00000341753 J3KT08 172 aa15.53■□□□□ 0.08
TRIM28-202ENST00000341753 DEFB130BP0DP73 79 aa15.53■□□□□ 0.08
TRIM28-202ENST00000341753 DEFB130AP0DP74 79 aa15.53■□□□□ 0.08
TRIM28-202ENST00000341753 RNASE1P07998 156 aaKnown RBP15.52■□□□□ 0.08
TRIM28-202ENST00000341753 A0A096LPF7 62 aa15.52■□□□□ 0.07
TRIM28-202ENST00000341753 FAM19A5Q7Z5A7 132 aaPredicted RBP15.52■□□□□ 0.07
TRIM28-202ENST00000341753 GCN1Q92616 2671 aaKnown RBP15.51■□□□□ 0.07
TRIM28-202ENST00000341753 SERP2Q8N6R1 65 aa15.5■□□□□ 0.07
TRIM28-202ENST00000341753 NBEAL2Q6ZNJ1 2754 aa15.5■□□□□ 0.07
TRIM28-202ENST00000341753 VWFP04275 2813 aa15.5■□□□□ 0.07
TRIM28-202ENST00000341753 LY6G6DO95868 133 aa15.49■□□□□ 0.07
TRIM28-202ENST00000341753 CCKP06307 115 aa15.48■□□□□ 0.07
TRIM28-202ENST00000341753 NANOS2P60321 138 aaKnown RBP15.48■□□□□ 0.07
TRIM28-202ENST00000341753 CSNK1G2-AS1Q8NCQ2 148 aa15.47■□□□□ 0.07
TRIM28-202ENST00000341753 UPK3BQ9BT76 320 aa15.47■□□□□ 0.07
TRIM28-202ENST00000341753 DSCR8Q96T75 97 aa15.45■□□□□ 0.06
TRIM28-202ENST00000341753 KMT2BQ9UMN6 2715 aaPredicted RBP15.45■□□□□ 0.06
TRIM28-202ENST00000341753 OTOGQ6ZRI0 2925 aa15.45■□□□□ 0.06
TRIM28-202ENST00000341753 J3QKU1 62 aa15.45■□□□□ 0.06
TRIM28-202ENST00000341753 Q8N814 137 aa15.45■□□□□ 0.06
TRIM28-202ENST00000341753 GYPEP15421 78 aa15.44■□□□□ 0.06
TRIM28-202ENST00000341753 C9orf116Q5BN46 136 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-202ENST00000341753 FAM19A1Q7Z5A9 133 aa15.44■□□□□ 0.06
TRIM28-202ENST00000341753 TRAV23DV6A0A075B6W5 121 aa15.44■□□□□ 0.06
TRIM28-202ENST00000341753 C19orf73Q9NVV2 129 aa15.43■□□□□ 0.06
TRIM28-202ENST00000341753 IGLV10-54A0A075B6I4 117 aa15.41■□□□□ 0.06
TRIM28-202ENST00000341753 KRTAP10-3P60369 221 aa15.41■□□□□ 0.06
TRIM28-202ENST00000341753 ENHOQ6UWT2 76 aa15.41■□□□□ 0.06
TRIM28-202ENST00000341753 C16orf95Q9H693 158 aa15.41■□□□□ 0.06
TRIM28-202ENST00000341753 IGLV1-51P01701 117 aa15.4■□□□□ 0.06
TRIM28-202ENST00000341753 Q8N3U1 123 aa15.4■□□□□ 0.06
TRIM28-202ENST00000341753 Q8IZM0 81 aa15.4■□□□□ 0.06
TRIM28-202ENST00000341753 DPH3Q96FX2 82 aa15.4■□□□□ 0.06
TRIM28-202ENST00000341753 Q8NDZ9 215 aa15.39■□□□□ 0.05
TRIM28-202ENST00000341753 OXTP01178 125 aa15.38■□□□□ 0.05
TRIM28-202ENST00000341753 GHRHP01286 108 aa15.38■□□□□ 0.05
TRIM28-202ENST00000341753 C6orf99Q4VX62 202 aa15.37■□□□□ 0.05
TRIM28-202ENST00000341753 LINC00167Q96N53 147 aa15.37■□□□□ 0.05
TRIM28-202ENST00000341753 SMIM9A6NGZ8 99 aa15.37■□□□□ 0.05
TRIM28-202ENST00000341753 TMEM258P61165 79 aa15.37■□□□□ 0.05
TRIM28-202ENST00000341753 SPATA3Q8NHX4 192 aa15.37■□□□□ 0.05
TRIM28-202ENST00000341753 JMJD7-PLA2G4BH0Y9G9 81 aa15.37■□□□□ 0.05
TRIM28-202ENST00000341753 TENM1Q9UKZ4 2725 aa15.36■□□□□ 0.05
TRIM28-202ENST00000341753 TMEM256-PLSCR3K7ERE1 68 aa15.36■□□□□ 0.05
TRIM28-202ENST00000341753 LINC00269Q8N2A0 174 aa15.36■□□□□ 0.05
TRIM28-202ENST00000341753 RPS28P62857 69 aaKnown RBP15.34■□□□□ 0.05
TRIM28-202ENST00000341753 KIAA0087Q14695 138 aa15.32■□□□□ 0.04
TRIM28-202ENST00000341753 CMC4P56277 68 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-202ENST00000341753 S100A7L2Q5SY68 101 aa15.31■□□□□ 0.04
TRIM28-202ENST00000341753 M0R2N4 97 aa15.3■□□□□ 0.04
TRIM28-202ENST00000341753 A0A1B0GUV1 79 aa15.3■□□□□ 0.04
TRIM28-202ENST00000341753 TRRAPQ9Y4A5 3859 aa15.29■□□□□ 0.04
TRIM28-202ENST00000341753 CHCHD10Q8WYQ3 142 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-202ENST00000341753 UBL5Q9BZL1 73 aa15.29■□□□□ 0.04
TRIM28-202ENST00000341753 C20orf197Q8N268 126 aa15.28■□□□□ 0.04
TRIM28-202ENST00000341753 DEFB4AO15263 64 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms