RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 HILS1P60008 231 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 ZFYVE26Q68DK2 2539 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 SETD2Q9BYW2 2564 aaPredicted RBP8.33□□□□□ -1.08
VPS39-201ENST00000318006 MRGPRG-AS1Q2M3A8 158 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 PRO0461Q9UI25 63 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 Q8N9L7 120 aa8.33□□□□□ -1.08
VPS39-201ENST00000318006 SYCNQ0VAF6 134 aa8.32□□□□□ -1.08
VPS39-201ENST00000318006 ZNF580Q9UK33 172 aa8.32□□□□□ -1.08
VPS39-201ENST00000318006 CRYGAP11844 174 aa8.32□□□□□ -1.08
VPS39-201ENST00000318006 A0A0J9YWU9 116 aa8.32□□□□□ -1.08
VPS39-201ENST00000318006 LINC00846Q9NV44 126 aa8.32□□□□□ -1.08
VPS39-201ENST00000318006 KRTAP10-9P60411 292 aa8.32□□□□□ -1.08
VPS39-201ENST00000318006 K7ERS5 55 aa8.31□□□□□ -1.08
VPS39-201ENST00000318006 RPS28P62857 69 aaKnown RBP8.31□□□□□ -1.08
VPS39-201ENST00000318006 CHCHD7Q9BUK0 85 aa8.31□□□□□ -1.08
VPS39-201ENST00000318006 IGKV2-28A0A075B6P5 120 aa8.3□□□□□ -1.08
VPS39-201ENST00000318006 IGKV2D-28P01615 120 aa8.3□□□□□ -1.08
VPS39-201ENST00000318006 LOC100131303A0A0U1RQF7 123 aa8.3□□□□□ -1.08
VPS39-201ENST00000318006 WFDC10AQ9H1F0 79 aa8.3□□□□□ -1.08
VPS39-201ENST00000318006 TRBV7-6A0A0J9YX20 115 aa8.29□□□□□ -1.08
VPS39-201ENST00000318006 PRM2P04554 102 aa8.29□□□□□ -1.08
VPS39-201ENST00000318006 COX6A2Q02221 97 aa8.29□□□□□ -1.08
VPS39-201ENST00000318006 BRI3O95415 125 aa8.29□□□□□ -1.08
VPS39-201ENST00000318006 TMEM254Q8TBM7 123 aa8.29□□□□□ -1.08
VPS39-201ENST00000318006 BBC3Q96PG8 261 aaPredicted RBP8.29□□□□□ -1.08
VPS39-201ENST00000318006 EDN2P20800 178 aa8.29□□□□□ -1.08
VPS39-201ENST00000318006 C4orf48Q5BLP8 95 aa8.29□□□□□ -1.08
VPS39-201ENST00000318006 RETNQ9HD89 108 aa8.28□□□□□ -1.08
VPS39-201ENST00000318006 LINC01546A6NGU7 62 aa8.28□□□□□ -1.08
VPS39-201ENST00000318006 C14orf177Q52M58 125 aa8.28□□□□□ -1.08
VPS39-201ENST00000318006 DEFB131BA0A096LNP1 70 aa8.28□□□□□ -1.08
VPS39-201ENST00000318006 TRBV10-3A0A0K0K1G6 114 aa8.28□□□□□ -1.08
VPS39-201ENST00000318006 RAI1Q7Z5J4 1906 aaPredicted RBP8.27□□□□□ -1.09
VPS39-201ENST00000318006 FN1P02751 2386 aaKnown RBP8.27□□□□□ -1.09
VPS39-201ENST00000318006 A0A087WZ39 114 aa8.27□□□□□ -1.09
VPS39-201ENST00000318006 PLA2G2AP14555 144 aa8.27□□□□□ -1.09
VPS39-201ENST00000318006 PSPHP1O15172 72 aa8.27□□□□□ -1.09
VPS39-201ENST00000318006 LINC00208Q96KT6 92 aa8.27□□□□□ -1.09
VPS39-201ENST00000318006 ODF3L2Q3SX64 289 aa8.26□□□□□ -1.09
VPS39-201ENST00000318006 ESRGQ1W209 222 aa8.26□□□□□ -1.09
VPS39-201ENST00000318006 Q6ZVQ6 151 aa8.26□□□□□ -1.09
VPS39-201ENST00000318006 LRRK2Q5S007 2527 aa8.25□□□□□ -1.09
VPS39-201ENST00000318006 CYSRT1A8MQ03 144 aa8.25□□□□□ -1.09
VPS39-201ENST00000318006 KIR2DL5BQ8NHK3 375 aa8.25□□□□□ -1.09
VPS39-201ENST00000318006 SBSPONQ8IVN8 264 aa8.24□□□□□ -1.09
VPS39-201ENST00000318006 AGRNO00468 2067 aa8.24□□□□□ -1.09
VPS39-201ENST00000318006 LELP1Q5T871 98 aa8.24□□□□□ -1.09
VPS39-201ENST00000318006 NANOS2P60321 138 aaKnown RBP8.24□□□□□ -1.09
VPS39-201ENST00000318006 LINC01547P58512 204 aaPredicted RBP8.24□□□□□ -1.09
VPS39-201ENST00000318006 PRR3P79522 188 aaKnown RBP8.23□□□□□ -1.09
VPS39-201ENST00000318006 PCSK5Q92824 1860 aa8.23□□□□□ -1.09
VPS39-201ENST00000318006 C4orf26Q17RF5 130 aa8.23□□□□□ -1.09
VPS39-201ENST00000318006 UNQ6190/PRO20217Q6UXQ8 127 aa8.23□□□□□ -1.09
VPS39-201ENST00000318006 ZNF462Q96JM2 2506 aa8.22□□□□□ -1.09
VPS39-201ENST00000318006 C1orf137Q5JT78 98 aa8.22□□□□□ -1.09
VPS39-201ENST00000318006 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.22□□□□□ -1.09
VPS39-201ENST00000318006 IL17DQ8TAD2 202 aa8.22□□□□□ -1.09
VPS39-201ENST00000318006 DOPEY1Q5JWR5 2465 aa8.21□□□□□ -1.09
VPS39-201ENST00000318006 CXCL6P80162 114 aa8.21□□□□□ -1.1
VPS39-201ENST00000318006 LINC00337Q8N6G1 96 aa8.21□□□□□ -1.1
VPS39-201ENST00000318006 TRIOO75962 3097 aa8.21□□□□□ -1.1
VPS39-201ENST00000318006 BCE1O60756 84 aa8.21□□□□□ -1.1
VPS39-201ENST00000318006 SMR3AQ99954 134 aa8.21□□□□□ -1.1
VPS39-201ENST00000318006 IGLV1-51P01701 117 aa8.2□□□□□ -1.1
VPS39-201ENST00000318006 C9orf116Q5BN46 136 aaPredicted RBP8.2□□□□□ -1.1
VPS39-201ENST00000318006 LINC00575Q6W349 94 aa8.2□□□□□ -1.1
VPS39-201ENST00000318006 RPL37AP8A6NKH3 93 aa8.2□□□□□ -1.1
VPS39-201ENST00000318006 IGLV4-60A0A075B6I1 120 aa8.19□□□□□ -1.1
VPS39-201ENST00000318006 EGFEM1PQ0D2K5 195 aa8.19□□□□□ -1.1
VPS39-201ENST00000318006 KIF25-AS1Q9Y6Z4 181 aa8.19□□□□□ -1.1
VPS39-201ENST00000318006 KPRPQ5T749 579 aaPredicted RBP8.19□□□□□ -1.1
VPS39-201ENST00000318006 MTORP42345 2549 aa8.18□□□□□ -1.1
VPS39-201ENST00000318006 TRAV10A0A0B4J240 114 aa8.18□□□□□ -1.1
VPS39-201ENST00000318006 PKD1L2Q7Z442 2459 aa8.18□□□□□ -1.1
VPS39-201ENST00000318006 SZT2Q5T011 3432 aa8.17□□□□□ -1.1
VPS39-201ENST00000318006 BEAN1Q3B7T3 259 aa8.17□□□□□ -1.1
VPS39-201ENST00000318006 IGLV5-39A0A0G2JS06 123 aa8.17□□□□□ -1.1
VPS39-201ENST00000318006 A0A0C4DFX4 3053 aa8.16□□□□□ -1.1
VPS39-201ENST00000318006 IGHV4-30-4P0DP06 118 aa8.16□□□□□ -1.1
VPS39-201ENST00000318006 C16orf95Q9H693 158 aa8.16□□□□□ -1.1
VPS39-201ENST00000318006 OXLD1Q5BKU9 147 aa8.15□□□□□ -1.1
VPS39-201ENST00000318006 SPINK6Q6UWN8 80 aa8.15□□□□□ -1.1
VPS39-201ENST00000318006 PTPRBP23467 1997 aa8.15□□□□□ -1.1
VPS39-201ENST00000318006 Q6ZSN1 163 aa8.15□□□□□ -1.1
VPS39-201ENST00000318006 Q8N2B8 174 aa8.15□□□□□ -1.1
VPS39-201ENST00000318006 POLQO75417 2590 aa8.15□□□□□ -1.11
VPS39-201ENST00000318006 hDV103S1A0JD37 113 aa8.15□□□□□ -1.11
VPS39-201ENST00000318006 TET2Q6N021 2002 aaPredicted RBP8.15□□□□□ -1.11
VPS39-201ENST00000318006 LIMD2Q9BT23 127 aa8.14□□□□□ -1.11
VPS39-201ENST00000318006 ZNF706Q9Y5V0 76 aaPredicted RBP8.14□□□□□ -1.11
VPS39-201ENST00000318006 FASNP49327 2511 aaKnown RBP8.13□□□□□ -1.11
VPS39-201ENST00000318006 H0Y9P7 68 aa8.13□□□□□ -1.11
VPS39-201ENST00000318006 LINC01561Q8N1V8 128 aa8.13□□□□□ -1.11
VPS39-201ENST00000318006 XIRP2A4UGR9 3374 aa8.12□□□□□ -1.11
VPS39-201ENST00000318006 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.12□□□□□ -1.11
VPS39-201ENST00000318006 LINC00315P59091 139 aa8.12□□□□□ -1.11
VPS39-201ENST00000318006 C10orf25Q5T742 122 aa8.12□□□□□ -1.11
VPS39-201ENST00000318006 HCG22E2RYF7 251 aa8.12□□□□□ -1.11
VPS39-201ENST00000318006 A0A1B0GUV1 79 aa8.11□□□□□ -1.11
VPS39-201ENST00000318006 FHL2Q14192 279 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms