RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 SLPIP03973 132 aa16.97■□□□□ 0.31
SPTSSA-201ENST00000298130 RPL28P46779 137 aaKnown RBP16.97■□□□□ 0.31
SPTSSA-201ENST00000298130 KRTAP10-3P60369 221 aa16.97■□□□□ 0.31
SPTSSA-201ENST00000298130 LINC00482Q8N8I6 264 aa16.96■□□□□ 0.31
SPTSSA-201ENST00000298130 A0A087WZ39 114 aa16.96■□□□□ 0.31
SPTSSA-201ENST00000298130 PRR3P79522 188 aaKnown RBP16.96■□□□□ 0.31
SPTSSA-201ENST00000298130 CMC4P56277 68 aaPredicted RBP16.95■□□□□ 0.3
SPTSSA-201ENST00000298130 UNC79Q9P2D8 2635 aa16.95■□□□□ 0.3
SPTSSA-201ENST00000298130 MALP21145 153 aa16.94■□□□□ 0.3
SPTSSA-201ENST00000298130 IGLV10-54A0A075B6I4 117 aa16.93■□□□□ 0.3
SPTSSA-201ENST00000298130 C16orf95Q9H693 158 aa16.93■□□□□ 0.3
SPTSSA-201ENST00000298130 FAM236AA0A1B0GUQ0 79 aa16.92■□□□□ 0.3
SPTSSA-201ENST00000298130 FAM236BA0A1B0GV22 79 aa16.92■□□□□ 0.3
SPTSSA-201ENST00000298130 LECT2O14960 151 aa16.92■□□□□ 0.3
SPTSSA-201ENST00000298130 DNAL4O96015 105 aa16.92■□□□□ 0.3
SPTSSA-201ENST00000298130 PF4P02776 101 aa16.92■□□□□ 0.3
SPTSSA-201ENST00000298130 C14orf132Q9NPU4 83 aa16.91■□□□□ 0.3
SPTSSA-201ENST00000298130 HECTD1Q9ULT8 2610 aa16.9■□□□□ 0.3
SPTSSA-201ENST00000298130 IBA57-AS1B1ANH7 110 aa16.89■□□□□ 0.3
SPTSSA-201ENST00000298130 MRPL23Q16540 153 aaKnown RBP16.89■□□□□ 0.29
SPTSSA-201ENST00000298130 FAM222AQ5U5X8 452 aa16.89■□□□□ 0.29
SPTSSA-201ENST00000298130 FAM110AQ9BQ89 295 aa16.88■□□□□ 0.29
SPTSSA-201ENST00000298130 TRBV7-7A0A0K0K1E9 115 aa16.87■□□□□ 0.29
SPTSSA-201ENST00000298130 TENM1Q9UKZ4 2725 aa16.87■□□□□ 0.29
SPTSSA-201ENST00000298130 X6R8D5 127 aa16.87■□□□□ 0.29
SPTSSA-201ENST00000298130 C9orf116Q5BN46 136 aaPredicted RBP16.86■□□□□ 0.29
SPTSSA-201ENST00000298130 LINC00269Q8N2A0 174 aa16.86■□□□□ 0.29
SPTSSA-201ENST00000298130 NCR3O14931 201 aa16.85■□□□□ 0.29
SPTSSA-201ENST00000298130 ACYP1P07311 99 aa16.84■□□□□ 0.29
SPTSSA-201ENST00000298130 HILS1P60008 231 aa16.84■□□□□ 0.29
SPTSSA-201ENST00000298130 SS18Q15532 418 aa16.84■□□□□ 0.29
SPTSSA-201ENST00000298130 DEFB135Q30KP9 77 aa16.84■□□□□ 0.29
SPTSSA-201ENST00000298130 TRRAPQ9Y4A5 3859 aa16.84■□□□□ 0.29
SPTSSA-201ENST00000298130 LINC00643Q86TS7 51 aa16.82■□□□□ 0.28
SPTSSA-201ENST00000298130 KIR2DL5BQ8NHK3 375 aa16.81■□□□□ 0.28
SPTSSA-201ENST00000298130 LINC00526Q96FQ7 95 aa16.81■□□□□ 0.28
SPTSSA-201ENST00000298130 PRO0255Q9UI72 69 aa16.8■□□□□ 0.28
SPTSSA-201ENST00000298130 INAFM2P0DMQ5 153 aa16.79■□□□□ 0.28
SPTSSA-201ENST00000298130 ANGP03950 147 aaKnown RBP16.78■□□□□ 0.28
SPTSSA-201ENST00000298130 OTOGQ6ZRI0 2925 aa16.78■□□□□ 0.28
SPTSSA-201ENST00000298130 SDIM1Q6ZPB5 146 aa16.77■□□□□ 0.28
SPTSSA-201ENST00000298130 ATRQ13535 2644 aa16.77■□□□□ 0.28
SPTSSA-201ENST00000298130 HTN3P15516 51 aa16.77■□□□□ 0.27
SPTSSA-201ENST00000298130 PPDPFQ9H3Y8 114 aa16.77■□□□□ 0.27
SPTSSA-201ENST00000298130 IGKV3D-7A0A0C4DH55 119 aa16.76■□□□□ 0.27
SPTSSA-201ENST00000298130 H0YGX0 51 aa16.76■□□□□ 0.27
SPTSSA-201ENST00000298130 LINC00612Q8N6U2 182 aa16.76■□□□□ 0.27
SPTSSA-201ENST00000298130 CHCHD10Q8WYQ3 142 aaPredicted RBP16.75■□□□□ 0.27
SPTSSA-201ENST00000298130 Q8IZM0 81 aa16.74■□□□□ 0.27
SPTSSA-201ENST00000298130 A0A1B0GUV1 79 aa16.74■□□□□ 0.27
SPTSSA-201ENST00000298130 Q8NDZ9 215 aa16.74■□□□□ 0.27
SPTSSA-201ENST00000298130 LINC00846Q9NV44 126 aa16.73■□□□□ 0.27
SPTSSA-201ENST00000298130 NANOS2P60321 138 aaKnown RBP16.72■□□□□ 0.27
SPTSSA-201ENST00000298130 C6orf223Q8N319 242 aa16.72■□□□□ 0.27
SPTSSA-201ENST00000298130 CELA1Q9UNI1 258 aa16.72■□□□□ 0.27
SPTSSA-201ENST00000298130 KIAA0087Q14695 138 aa16.71■□□□□ 0.27
SPTSSA-201ENST00000298130 REG3AQ06141 175 aa16.71■□□□□ 0.26
SPTSSA-201ENST00000298130 CFAP161Q6P656 301 aa16.7■□□□□ 0.26
SPTSSA-201ENST00000298130 IGHV4-28A0A0C4DH34 117 aa16.69■□□□□ 0.26
SPTSSA-201ENST00000298130 IMUPQ9GZP8 106 aa16.69■□□□□ 0.26
SPTSSA-201ENST00000298130 C10orf25Q5T742 122 aa16.68■□□□□ 0.26
SPTSSA-201ENST00000298130 A0A087WVE0 104 aa16.67■□□□□ 0.26
SPTSSA-201ENST00000298130 LY6G6DO95868 133 aa16.67■□□□□ 0.26
SPTSSA-201ENST00000298130 KLK5Q9Y337 293 aaPredicted RBP16.67■□□□□ 0.26
SPTSSA-201ENST00000298130 CXCL5P42830 114 aa16.67■□□□□ 0.26
SPTSSA-201ENST00000298130 CD164L2Q6UWJ8 174 aa16.67■□□□□ 0.26
SPTSSA-201ENST00000298130 SMIM20Q8N5G0 67 aa16.67■□□□□ 0.26
SPTSSA-201ENST00000298130 ORMDL1Q9P0S3 153 aa16.67■□□□□ 0.26
SPTSSA-201ENST00000298130 DAD1P61803 113 aa16.66■□□□□ 0.26
SPTSSA-201ENST00000298130 UNQ6190/PRO20217Q6UXQ8 127 aa16.64■□□□□ 0.25
SPTSSA-201ENST00000298130 HIVEP1P15822 2718 aa16.63■□□□□ 0.25
SPTSSA-201ENST00000298130 C6orf99Q4VX62 202 aa16.62■□□□□ 0.25
SPTSSA-201ENST00000298130 OBSCN-AS1Q96MR7 158 aa16.62■□□□□ 0.25
SPTSSA-201ENST00000298130 Q8N814 137 aa16.61■□□□□ 0.25
SPTSSA-201ENST00000298130 SMIM9A6NGZ8 99 aa16.6■□□□□ 0.25
SPTSSA-201ENST00000298130 C9orf153Q5TBE3 101 aa16.6■□□□□ 0.25
SPTSSA-201ENST00000298130 LYRM9A8MSI8 78 aa16.6■□□□□ 0.25
SPTSSA-201ENST00000298130 INAFM1C9JVW0 142 aa16.6■□□□□ 0.25
SPTSSA-201ENST00000298130 KLK12Q9UKR0 248 aa16.6■□□□□ 0.25
SPTSSA-201ENST00000298130 TEP1Q99973 2627 aaKnown RBP16.59■□□□□ 0.25
SPTSSA-201ENST00000298130 NSD1Q96L73 2696 aaPredicted RBP16.58■□□□□ 0.25
SPTSSA-201ENST00000298130 WFDC9Q8NEX5 89 aa16.58■□□□□ 0.25
SPTSSA-201ENST00000298130 S100A7L2Q5SY68 101 aa16.57■□□□□ 0.24
SPTSSA-201ENST00000298130 TMEM126AQ9H061 195 aa16.57■□□□□ 0.24
SPTSSA-201ENST00000298130 SPAG11BQ08648 103 aa16.55■□□□□ 0.24
SPTSSA-201ENST00000298130 C3orf22Q8N5N4 141 aa16.55■□□□□ 0.24
SPTSSA-201ENST00000298130 J3QKU1 62 aa16.55■□□□□ 0.24
SPTSSA-201ENST00000298130 C9orf66Q5T8R8 295 aa16.55■□□□□ 0.24
SPTSSA-201ENST00000298130 PKD1L1Q8TDX9 2849 aa16.55■□□□□ 0.24
SPTSSA-201ENST00000298130 LINC01561Q8N1V8 128 aa16.54■□□□□ 0.24
SPTSSA-201ENST00000298130 RPL18AQ02543 176 aaKnown RBP16.54■□□□□ 0.24
SPTSSA-201ENST00000298130 CYSRT1A8MQ03 144 aa16.53■□□□□ 0.24
SPTSSA-201ENST00000298130 Q8NAQ8 132 aa16.53■□□□□ 0.24
SPTSSA-201ENST00000298130 HIST1H4AP62805 103 aaKnown RBP16.52■□□□□ 0.24
SPTSSA-201ENST00000298130 XAGE1AQ9HD64 81 aa16.52■□□□□ 0.23
SPTSSA-201ENST00000298130 CCKP06307 115 aa16.5■□□□□ 0.23
SPTSSA-201ENST00000298130 COX17Q14061 63 aa16.5■□□□□ 0.23
SPTSSA-201ENST00000298130 NDUFC2O95298 119 aa16.49■□□□□ 0.23
SPTSSA-201ENST00000298130 APOC4P55056 127 aa16.49■□□□□ 0.23
SPTSSA-201ENST00000298130 CYSTM1Q9H1C7 97 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms