RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 LRRK2Q5S007 2527 aa13.35□□□□□ -0.27
SMARCC1-201ENST00000254480 IGLV5-52A0A0A0MRZ9 124 aa13.35□□□□□ -0.27
SMARCC1-201ENST00000254480 A8MTW9 85 aa13.35□□□□□ -0.27
SMARCC1-201ENST00000254480 DEFB116Q30KQ4 102 aa13.34□□□□□ -0.27
SMARCC1-201ENST00000254480 CPAMD8Q8IZJ3 1885 aa13.34□□□□□ -0.27
SMARCC1-201ENST00000254480 NUPR2A6NF83 97 aa13.33□□□□□ -0.27
SMARCC1-201ENST00000254480 USP9XQ93008 2570 aaPredicted RBP13.33□□□□□ -0.27
SMARCC1-201ENST00000254480 NTM-AS1Q6ZSK4 140 aa13.33□□□□□ -0.28
SMARCC1-201ENST00000254480 LINC01556Q5JQF7 62 aa13.32□□□□□ -0.28
SMARCC1-201ENST00000254480 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.32□□□□□ -0.28
SMARCC1-201ENST00000254480 REG3GQ6UW15 175 aa13.32□□□□□ -0.28
SMARCC1-201ENST00000254480 A0A087WVE0 104 aa13.32□□□□□ -0.28
SMARCC1-201ENST00000254480 NDUFC2-KCTD14E9PQ53 114 aa13.31□□□□□ -0.28
SMARCC1-201ENST00000254480 Q8N9L7 120 aa13.31□□□□□ -0.28
SMARCC1-201ENST00000254480 LINC00474Q9P2X8 69 aa13.31□□□□□ -0.28
SMARCC1-201ENST00000254480 SERP2Q8N6R1 65 aa13.31□□□□□ -0.28
SMARCC1-201ENST00000254480 ESRGQ1W209 222 aa13.3□□□□□ -0.28
SMARCC1-201ENST00000254480 Q8N814 137 aa13.3□□□□□ -0.28
SMARCC1-201ENST00000254480 C1orf137Q5JT78 98 aa13.3□□□□□ -0.28
SMARCC1-201ENST00000254480 EGFEM1PQ0D2K5 195 aa13.29□□□□□ -0.28
SMARCC1-201ENST00000254480 CEP295Q9C0D2 2601 aa13.29□□□□□ -0.28
SMARCC1-201ENST00000254480 IGHV6-1A0A0B4J1U7 121 aa13.29□□□□□ -0.28
SMARCC1-201ENST00000254480 Q6Q795 121 aa13.27□□□□□ -0.29
SMARCC1-201ENST00000254480 ANKRD11Q6UB99 2663 aaPredicted RBP13.26□□□□□ -0.29
SMARCC1-201ENST00000254480 RPL28P46779 137 aaKnown RBP13.26□□□□□ -0.29
SMARCC1-201ENST00000254480 K7ERS5 55 aa13.26□□□□□ -0.29
SMARCC1-201ENST00000254480 A6NED7 52 aa13.26□□□□□ -0.29
SMARCC1-201ENST00000254480 ADAMTS20P59510 1910 aa13.25□□□□□ -0.29
SMARCC1-201ENST00000254480 FAM240AA0A1B0GVK7 77 aa13.25□□□□□ -0.29
SMARCC1-201ENST00000254480 LYPD5Q6UWN5 251 aa13.25□□□□□ -0.29
SMARCC1-201ENST00000254480 COL5A1P20908 1838 aaPredicted RBP13.25□□□□□ -0.29
SMARCC1-201ENST00000254480 X6R8D5 127 aa13.25□□□□□ -0.29
SMARCC1-201ENST00000254480 Q6ZVQ6 151 aa13.24□□□□□ -0.29
SMARCC1-201ENST00000254480 C16orf95Q9H693 158 aa13.24□□□□□ -0.29
SMARCC1-201ENST00000254480 A0A096LNJ9 63 aa13.23□□□□□ -0.29
SMARCC1-201ENST00000254480 LINC00208Q96KT6 92 aa13.23□□□□□ -0.29
SMARCC1-201ENST00000254480 SERP1Q9Y6X1 66 aa13.22□□□□□ -0.29
SMARCC1-201ENST00000254480 PRLHP81277 87 aa13.22□□□□□ -0.29
SMARCC1-201ENST00000254480 Q9BRP9 147 aa13.22□□□□□ -0.29
SMARCC1-201ENST00000254480 PRR15LQ9BU68 103 aa13.21□□□□□ -0.29
SMARCC1-201ENST00000254480 ZNF462Q96JM2 2506 aa13.21□□□□□ -0.29
SMARCC1-201ENST00000254480 LINC01547P58512 204 aaPredicted RBP13.21□□□□□ -0.3
SMARCC1-201ENST00000254480 COX7CP15954 63 aa13.2□□□□□ -0.3
SMARCC1-201ENST00000254480 Q6ZRU5 148 aa13.2□□□□□ -0.3
SMARCC1-201ENST00000254480 AMELXQ99217 191 aa13.2□□□□□ -0.3
SMARCC1-201ENST00000254480 PCOTHQ58A44 107 aa13.2□□□□□ -0.3
SMARCC1-201ENST00000254480 MRPL55Q7Z7F7 128 aaKnown RBP13.19□□□□□ -0.3
SMARCC1-201ENST00000254480 A0A087WSZ3 146 aa13.18□□□□□ -0.3
SMARCC1-201ENST00000254480 LINC00575Q6W349 94 aa13.18□□□□□ -0.3
SMARCC1-201ENST00000254480 USP9YO00507 2555 aaPredicted RBP13.18□□□□□ -0.3
SMARCC1-201ENST00000254480 Q6JHZ5 121 aa13.18□□□□□ -0.3
SMARCC1-201ENST00000254480 SOSTDC1Q6X4U4 206 aa13.18□□□□□ -0.3
SMARCC1-201ENST00000254480 SPINK1P00995 79 aa13.18□□□□□ -0.3
SMARCC1-201ENST00000254480 C1orf134Q5TEV5 83 aa13.18□□□□□ -0.3
SMARCC1-201ENST00000254480 CHD8Q9HCK8 2581 aa13.17□□□□□ -0.3
SMARCC1-201ENST00000254480 SPTBN4Q9H254 2564 aa13.17□□□□□ -0.3
SMARCC1-201ENST00000254480 BEAN1Q3B7T3 259 aa13.16□□□□□ -0.3
SMARCC1-201ENST00000254480 IMUPQ9GZP8 106 aa13.16□□□□□ -0.3
SMARCC1-201ENST00000254480 PKD1L2Q7Z442 2459 aa13.15□□□□□ -0.3
SMARCC1-201ENST00000254480 NDUFC1O43677 76 aa13.14□□□□□ -0.31
SMARCC1-201ENST00000254480 SBSPONQ8IVN8 264 aa13.14□□□□□ -0.31
SMARCC1-201ENST00000254480 CSDC2Q9Y534 153 aaKnown RBP13.12□□□□□ -0.31
SMARCC1-201ENST00000254480 MUC7Q8TAX7 377 aa13.11□□□□□ -0.31
SMARCC1-201ENST00000254480 FHL3Q13643 280 aa13.11□□□□□ -0.31
SMARCC1-201ENST00000254480 Q8N3U1 123 aa13.11□□□□□ -0.31
SMARCC1-201ENST00000254480 A0A1B0GUV1 79 aa13.09□□□□□ -0.31
SMARCC1-201ENST00000254480 LINC00337Q8N6G1 96 aa13.09□□□□□ -0.31
SMARCC1-201ENST00000254480 TRBV7-6A0A0J9YX20 115 aa13.08□□□□□ -0.31
SMARCC1-201ENST00000254480 COX8CQ7Z4L0 72 aa13.08□□□□□ -0.32
SMARCC1-201ENST00000254480 V9GYY9 64 aa13.07□□□□□ -0.32
SMARCC1-201ENST00000254480 Q9UF83 564 aa13.06□□□□□ -0.32
SMARCC1-201ENST00000254480 C22orf24Q9Y442 160 aa13.06□□□□□ -0.32
SMARCC1-201ENST00000254480 MTORP42345 2549 aa13.06□□□□□ -0.32
SMARCC1-201ENST00000254480 ATP5EP56381 51 aaPredicted RBP13.06□□□□□ -0.32
SMARCC1-201ENST00000254480 C11orf72Q8NBR9 251 aa13.06□□□□□ -0.32
SMARCC1-201ENST00000254480 C2orf48Q96LS8 159 aa13.06□□□□□ -0.32
SMARCC1-201ENST00000254480 TRAV7A0A075B6U4 112 aa13.05□□□□□ -0.32
SMARCC1-201ENST00000254480 POLQO75417 2590 aa13.04□□□□□ -0.32
SMARCC1-201ENST00000254480 MDFIQ99750 246 aa13.04□□□□□ -0.32
SMARCC1-201ENST00000254480 SMCR5Q8TEV8 140 aa13.03□□□□□ -0.32
SMARCC1-201ENST00000254480 KIF25-AS1Q9Y6Z4 181 aa13.03□□□□□ -0.32
SMARCC1-201ENST00000254480 LINC00846Q9NV44 126 aa13.02□□□□□ -0.33
SMARCC1-201ENST00000254480 PRYO14603 147 aa13.02□□□□□ -0.33
SMARCC1-201ENST00000254480 H0Y9P7 68 aa13□□□□□ -0.33
SMARCC1-201ENST00000254480 PSPHP1O15172 72 aa13□□□□□ -0.33
SMARCC1-201ENST00000254480 HCG22E2RYF7 251 aa12.99□□□□□ -0.33
SMARCC1-201ENST00000254480 KIAA0087Q14695 138 aa12.98□□□□□ -0.33
SMARCC1-201ENST00000254480 FSHBP01225 129 aa12.97□□□□□ -0.33
SMARCC1-201ENST00000254480 UTRNP46939 3433 aa12.97□□□□□ -0.33
SMARCC1-201ENST00000254480 FASNP49327 2511 aaKnown RBP12.97□□□□□ -0.33
SMARCC1-201ENST00000254480 Q8N2B8 174 aa12.96□□□□□ -0.34
SMARCC1-201ENST00000254480 TRBV7-7A0A0K0K1E9 115 aa12.95□□□□□ -0.34
SMARCC1-201ENST00000254480 ACANP16112 2415 aa12.95□□□□□ -0.34
SMARCC1-201ENST00000254480 SPACA4Q8TDM5 124 aa12.95□□□□□ -0.34
SMARCC1-201ENST00000254480 IGKV2D-30A0A075B6S6 120 aa12.94□□□□□ -0.34
SMARCC1-201ENST00000254480 IGKV2-30P06310 120 aa12.94□□□□□ -0.34
SMARCC1-201ENST00000254480 PTPRBP23467 1997 aa12.93□□□□□ -0.34
SMARCC1-201ENST00000254480 LINC00315P59091 139 aa12.92□□□□□ -0.34
SMARCC1-201ENST00000254480 C6orf48Q9UBA6 75 aa12.92□□□□□ -0.34
SMARCC1-201ENST00000254480 IGHV3OR16-9A0A0B4J2B5 98 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms