RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TMEM243Q9BU79 118 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 TRGV4A0A0C4DH28 118 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 BAALC-AS2P0C853 105 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 IFITM1P13164 125 aa7.42□□□□□ -1.22
USP28-201ENST00000003302 SND1-IT1Q9HBX3 110 aa7.41□□□□□ -1.22
USP28-201ENST00000003302 DNAH10Q8IVF4 4471 aa7.41□□□□□ -1.22
USP28-201ENST00000003302 LINC00158P58513 81 aa7.41□□□□□ -1.22
USP28-201ENST00000003302 UBE2L6O14933 153 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 COX7B2Q8TF08 81 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 C14orf132Q9NPU4 83 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 CIRBPQ14011 172 aaKnown RBP7.4□□□□□ -1.22
USP28-201ENST00000003302 CMYA5Q8N3K9 4069 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 TRBV6-8A0A0A6YYG3 113 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 FAM236AA0A1B0GUQ0 79 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 FAM236BA0A1B0GV22 79 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 SS18Q15532 418 aa7.4□□□□□ -1.22
USP28-201ENST00000003302 CSDC2Q9Y534 153 aaKnown RBP7.4□□□□□ -1.22
USP28-201ENST00000003302 NCR3O14931 201 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 IGLV1-51P01701 117 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 DEFB121Q5J5C9 76 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 YAE1D1Q9NRH1 226 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 KLK5Q9Y337 293 aaPredicted RBP7.39□□□□□ -1.23
USP28-201ENST00000003302 FAM19A3Q7Z5A8 133 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 A0A087WVE0 104 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 TRBV10-1A0A0K0K1A3 114 aa7.39□□□□□ -1.23
USP28-201ENST00000003302 GAGE2AQ6NT46 116 aa7.38□□□□□ -1.23
USP28-201ENST00000003302 NANOS2P60321 138 aaKnown RBP7.37□□□□□ -1.23
USP28-201ENST00000003302 LECT2O14960 151 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 GYPEP15421 78 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 LINC00959A0A1B0GUT2 108 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 SDIM1Q6ZPB5 146 aa7.37□□□□□ -1.23
USP28-201ENST00000003302 C6orf223Q8N319 242 aa7.36□□□□□ -1.23
USP28-201ENST00000003302 WFDC9Q8NEX5 89 aa7.36□□□□□ -1.23
USP28-201ENST00000003302 PAX4O43316 350 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 OR13C6PQ8NH95 151 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 IGKV3D-7A0A0C4DH55 119 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 C10orf25Q5T742 122 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 X6R8D5 127 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 TRBV6-4A0A1B0GX49 114 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 C16orf74Q96GX8 76 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 LINC00846Q9NV44 126 aa7.35□□□□□ -1.23
USP28-201ENST00000003302 SMIM20Q8N5G0 67 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 CRPP02741 224 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 LINC00269Q8N2A0 174 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 CELA1Q9UNI1 258 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 A0A087WZ39 114 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 RPL28P46779 137 aaKnown RBP7.34□□□□□ -1.23
USP28-201ENST00000003302 DEFB135Q30KP9 77 aa7.34□□□□□ -1.23
USP28-201ENST00000003302 MALP21145 153 aa7.34□□□□□ -1.24
USP28-201ENST00000003302 M0R2N4 97 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 OVOL2Q9BRP0 275 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 TRAV25A0A0B4J276 109 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 FAM222AQ5U5X8 452 aa7.33□□□□□ -1.24
USP28-201ENST00000003302 TRBV7-7A0A0K0K1E9 115 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 LRRC75A-AS1Q8N1F1 130 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 FAM240AA0A1B0GVK7 77 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 C6orf226Q5I0X4 101 aa7.32□□□□□ -1.24
USP28-201ENST00000003302 TRACP01848 142 aa7.31□□□□□ -1.24
USP28-201ENST00000003302 Q6Q795 121 aa7.31□□□□□ -1.24
USP28-201ENST00000003302 KIAA0087Q14695 138 aa7.31□□□□□ -1.24
USP28-201ENST00000003302 CXCL5P42830 114 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 HILS1P60008 231 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 RNASE1P07998 156 aaKnown RBP7.3□□□□□ -1.24
USP28-201ENST00000003302 HERV-K104P63124 156 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 DNAH7Q8WXX0 4024 aa7.3□□□□□ -1.24
USP28-201ENST00000003302 HTN3P15516 51 aa7.29□□□□□ -1.24
USP28-201ENST00000003302 LOC107984640A0A0U1RRK4 108 aa7.28□□□□□ -1.24
USP28-201ENST00000003302 UNQ6190/PRO20217Q6UXQ8 127 aa7.28□□□□□ -1.24
USP28-201ENST00000003302 TRAV13-2A0A0B4J235 113 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 DNAH9Q9NYC9 4486 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 ANGP03950 147 aaKnown RBP7.27□□□□□ -1.25
USP28-201ENST00000003302 TMEM86BQ8N661 226 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 LINC01561Q8N1V8 128 aa7.27□□□□□ -1.25
USP28-201ENST00000003302 IBA57-AS1B1ANH7 110 aa7.26□□□□□ -1.25
USP28-201ENST00000003302 CHCHD10Q8WYQ3 142 aaPredicted RBP7.26□□□□□ -1.25
USP28-201ENST00000003302 C2orf48Q96LS8 159 aa7.26□□□□□ -1.25
USP28-201ENST00000003302 DNAL4O96015 105 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 STAB2Q8WWQ8 2551 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 MRPL23Q16540 153 aaKnown RBP7.25□□□□□ -1.25
USP28-201ENST00000003302 C6orf99Q4VX62 202 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 LINC00643Q86TS7 51 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 XAGE1AQ9HD64 81 aa7.25□□□□□ -1.25
USP28-201ENST00000003302 MGAM2Q2M2H8 2515 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 PPDPFQ9H3Y8 114 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 LINC00612Q8N6U2 182 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 PF4P02776 101 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 IGHV4-28A0A0C4DH34 117 aa7.24□□□□□ -1.25
USP28-201ENST00000003302 FAM19A1Q7Z5A9 133 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 OBSCN-AS1Q96MR7 158 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 C16orf95Q9H693 158 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 INAFM1C9JVW0 142 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 REG3AQ06141 175 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 RETNQ9HD89 108 aa7.23□□□□□ -1.25
USP28-201ENST00000003302 hADV29S1A0JD25 119 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 LY6G6DO95868 133 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 PRO0255Q9UI72 69 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 KIR2DL5BQ8NHK3 375 aa7.22□□□□□ -1.25
USP28-201ENST00000003302 KLK12Q9UKR0 248 aa7.21□□□□□ -1.25
USP28-201ENST00000003302 RPL18AQ02543 176 aaKnown RBP7.21□□□□□ -1.26
USP28-201ENST00000003302 Q8IZM0 81 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 756.2 ms