RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 SPANXCQ9NY87 97 aa10.64□□□□□ -0.71
CLN3-253ENST00000636977 LINC00242Q5T6M2 205 aa10.64□□□□□ -0.71
CLN3-253ENST00000636977 C2orf82Q6UX34 121 aa10.64□□□□□ -0.71
CLN3-253ENST00000636977 IL17DQ8TAD2 202 aa10.64□□□□□ -0.71
CLN3-253ENST00000636977 TRAV13-1A0A0B4J241 112 aa10.63□□□□□ -0.71
CLN3-253ENST00000636977 J3KT08 172 aa10.63□□□□□ -0.71
CLN3-253ENST00000636977 LRRC75A-AS1Q8N1F1 130 aa10.63□□□□□ -0.71
CLN3-253ENST00000636977 CLEC2BQ92478 149 aa10.63□□□□□ -0.71
CLN3-253ENST00000636977 NOP10Q9NPE3 64 aaKnown RBP10.63□□□□□ -0.71
CLN3-253ENST00000636977 GIG44P09565 113 aaPredicted RBP10.62□□□□□ -0.71
CLN3-253ENST00000636977 ICOSQ9Y6W8 199 aa10.62□□□□□ -0.71
CLN3-253ENST00000636977 TRBV30A0A0K0K1B3 111 aa10.62□□□□□ -0.71
CLN3-253ENST00000636977 LOC100131303A0A0U1RQF7 123 aa10.61□□□□□ -0.71
CLN3-253ENST00000636977 ATXN8Q156A1 80 aa10.61□□□□□ -0.71
CLN3-253ENST00000636977 Q9H8V8 135 aa10.61□□□□□ -0.71
CLN3-253ENST00000636977 IGLV5-45A0A087WSX0 123 aa10.61□□□□□ -0.71
CLN3-253ENST00000636977 TIRAPP58753 221 aa10.6□□□□□ -0.71
CLN3-253ENST00000636977 K7EQD1 137 aa10.6□□□□□ -0.71
CLN3-253ENST00000636977 RPL35AP18077 110 aaKnown RBP10.6□□□□□ -0.71
CLN3-253ENST00000636977 NDUFA1O15239 70 aa10.59□□□□□ -0.71
CLN3-253ENST00000636977 RPL13AP40429 203 aaKnown RBP10.59□□□□□ -0.71
CLN3-253ENST00000636977 OR13C6PQ8NH95 151 aa10.59□□□□□ -0.71
CLN3-253ENST00000636977 RPL36AP83881 106 aaKnown RBP10.59□□□□□ -0.71
CLN3-253ENST00000636977 C3orf22Q8N5N4 141 aa10.59□□□□□ -0.71
CLN3-253ENST00000636977 RPL36ALQ969Q0 106 aaKnown RBP10.59□□□□□ -0.71
CLN3-253ENST00000636977 ITPR2Q14571 2701 aa10.59□□□□□ -0.71
CLN3-253ENST00000636977 PDZD2O15018 2839 aa10.58□□□□□ -0.72
CLN3-253ENST00000636977 SMIM1B2RUZ4 78 aa10.58□□□□□ -0.72
CLN3-253ENST00000636977 IGLV5-39A0A0G2JS06 123 aa10.57□□□□□ -0.72
CLN3-253ENST00000636977 PLAC8L1A1L4L8 177 aa10.57□□□□□ -0.72
CLN3-253ENST00000636977 F5H768 121 aa10.57□□□□□ -0.72
CLN3-253ENST00000636977 SOSTDC1Q6X4U4 206 aa10.57□□□□□ -0.72
CLN3-253ENST00000636977 TMEM86BQ8N661 226 aa10.57□□□□□ -0.72
CLN3-253ENST00000636977 H7C423 109 aa10.57□□□□□ -0.72
CLN3-253ENST00000636977 LINC01006Q8NI28 216 aa10.57□□□□□ -0.72
CLN3-253ENST00000636977 GAGE2AQ6NT46 116 aa10.56□□□□□ -0.72
CLN3-253ENST00000636977 FN1P02751 2386 aaKnown RBP10.56□□□□□ -0.72
CLN3-253ENST00000636977 TRBV10-2A0A0K0K1G8 114 aa10.56□□□□□ -0.72
CLN3-253ENST00000636977 HRCT1Q6UXD1 115 aa10.56□□□□□ -0.72
CLN3-253ENST00000636977 CDC42SE2Q9NRR3 84 aa10.56□□□□□ -0.72
CLN3-253ENST00000636977 LINC00308Q8TCZ7 52 aa10.56□□□□□ -0.72
CLN3-253ENST00000636977 C4orf26Q17RF5 130 aa10.55□□□□□ -0.72
CLN3-253ENST00000636977 KIR2DL5BQ8NHK3 375 aa10.55□□□□□ -0.72
CLN3-253ENST00000636977 hADV29S1A0JD25 119 aa10.55□□□□□ -0.72
CLN3-253ENST00000636977 ANK3Q12955 4377 aaKnown RBP10.55□□□□□ -0.72
CLN3-253ENST00000636977 TIMM17BO60830 172 aa10.54□□□□□ -0.72
CLN3-253ENST00000636977 TRGV2A0A075B6R0 118 aa10.54□□□□□ -0.72
CLN3-253ENST00000636977 IGKV3OR2-268A0A0C4DH90 116 aa10.54□□□□□ -0.72
CLN3-253ENST00000636977 KRTAP1-1Q07627 177 aa10.54□□□□□ -0.72
CLN3-253ENST00000636977 DAZ2Q13117 558 aaKnown RBP10.54□□□□□ -0.72
CLN3-253ENST00000636977 DAZ4Q86SG3 579 aaKnown RBP10.54□□□□□ -0.72
CLN3-253ENST00000636977 DAZ3Q9NR90 486 aaKnown RBP10.54□□□□□ -0.72
CLN3-253ENST00000636977 TRBV10-1A0A0K0K1A3 114 aa10.53□□□□□ -0.72
CLN3-253ENST00000636977 NBEAL2Q6ZNJ1 2754 aa10.53□□□□□ -0.72
CLN3-253ENST00000636977 UQCRQO14949 82 aa10.53□□□□□ -0.72
CLN3-253ENST00000636977 C19orf73Q9NVV2 129 aa10.53□□□□□ -0.72
CLN3-253ENST00000636977 PRIMA1Q86XR5 153 aa10.53□□□□□ -0.72
CLN3-253ENST00000636977 CIRBPQ14011 172 aaKnown RBP10.52□□□□□ -0.73
CLN3-253ENST00000636977 DSCR8Q96T75 97 aa10.52□□□□□ -0.73
CLN3-253ENST00000636977 LST1O00453 97 aa10.51□□□□□ -0.73
CLN3-253ENST00000636977 COX6CP09669 75 aa10.51□□□□□ -0.73
CLN3-253ENST00000636977 GCN1Q92616 2671 aaKnown RBP10.51□□□□□ -0.73
CLN3-253ENST00000636977 FAM19A3Q7Z5A8 133 aa10.5□□□□□ -0.73
CLN3-253ENST00000636977 CSNK1G2-AS1Q8NCQ2 148 aa10.5□□□□□ -0.73
CLN3-253ENST00000636977 TMEM243Q9BU79 118 aa10.5□□□□□ -0.73
CLN3-253ENST00000636977 CYSTM1Q9H1C7 97 aa10.5□□□□□ -0.73
CLN3-253ENST00000636977 TRBV7-7A0A0K0K1E9 115 aa10.5□□□□□ -0.73
CLN3-253ENST00000636977 UBE2L6O14933 153 aa10.5□□□□□ -0.73
CLN3-253ENST00000636977 IGLV4-60A0A075B6I1 120 aa10.49□□□□□ -0.73
CLN3-253ENST00000636977 LINC00526Q96FQ7 95 aa10.49□□□□□ -0.73
CLN3-253ENST00000636977 IGLV1-51P01701 117 aa10.49□□□□□ -0.73
CLN3-253ENST00000636977 WIPF1O43516 503 aa10.48□□□□□ -0.73
CLN3-253ENST00000636977 C16orf74Q96GX8 76 aa10.48□□□□□ -0.73
CLN3-253ENST00000636977 LINC01600Q96MT4 127 aa10.48□□□□□ -0.73
CLN3-253ENST00000636977 TRGV4A0A0C4DH28 118 aa10.48□□□□□ -0.73
CLN3-253ENST00000636977 SMCR5Q8TEV8 140 aa10.47□□□□□ -0.73
CLN3-253ENST00000636977 VWFP04275 2813 aa10.47□□□□□ -0.73
CLN3-253ENST00000636977 TOMM7Q9P0U1 55 aa10.47□□□□□ -0.73
CLN3-253ENST00000636977 FHL2Q14192 279 aa10.46□□□□□ -0.74
CLN3-253ENST00000636977 RNASE1P07998 156 aaKnown RBP10.45□□□□□ -0.74
CLN3-253ENST00000636977 SMR3AQ99954 134 aa10.45□□□□□ -0.74
CLN3-253ENST00000636977 A0A1B0GX51 115 aa10.45□□□□□ -0.74
CLN3-253ENST00000636977 TRBV6-4A0A1B0GX49 114 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 H3BT86 120 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 TRACP01848 142 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 DEFB130BP0DP73 79 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 DEFB130AP0DP74 79 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 COX7CP15954 63 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 OVOL2Q9BRP0 275 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 OXTP01178 125 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 FAM218AQ96MZ4 157 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 C16orf95Q9H693 158 aa10.44□□□□□ -0.74
CLN3-253ENST00000636977 HELZ2Q9BYK8 2649 aaKnown RBP10.44□□□□□ -0.74
CLN3-253ENST00000636977 KRTAP10-3P60369 221 aa10.43□□□□□ -0.74
CLN3-253ENST00000636977 FASNP49327 2511 aaKnown RBP10.42□□□□□ -0.74
CLN3-253ENST00000636977 TRBV6-8A0A0A6YYG3 113 aa10.42□□□□□ -0.74
CLN3-253ENST00000636977 COX7A2LO14548 114 aa10.42□□□□□ -0.74
CLN3-253ENST00000636977 MIR7-3HGQ8N6C7 128 aa10.42□□□□□ -0.74
CLN3-253ENST00000636977 C5orf38Q86SI9 138 aa10.42□□□□□ -0.74
CLN3-253ENST00000636977 COX7B2Q8TF08 81 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms