RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PLECQ15149 4684 aaKnown RBP13.63□□□□□ -0.23
CLN3-250ENST00000636839 COX8AP10176 69 aa13.63□□□□□ -0.23
CLN3-250ENST00000636839 TSPEAR-AS2P59090 65 aa13.63□□□□□ -0.23
CLN3-250ENST00000636839 MIEN1Q9BRT3 115 aa13.63□□□□□ -0.23
CLN3-250ENST00000636839 IGLV5-45A0A087WSX0 123 aa13.62□□□□□ -0.23
CLN3-250ENST00000636839 E9PLD3 99 aa13.62□□□□□ -0.23
CLN3-250ENST00000636839 XCL1P47992 114 aa13.62□□□□□ -0.23
CLN3-250ENST00000636839 ZFAND6Q6FIF0 208 aa13.62□□□□□ -0.23
CLN3-250ENST00000636839 ENHOQ6UWT2 76 aa13.62□□□□□ -0.23
CLN3-250ENST00000636839 CCL18P55774 89 aa13.61□□□□□ -0.23
CLN3-250ENST00000636839 HERVK_113P63121 156 aa13.61□□□□□ -0.23
CLN3-250ENST00000636839 CCL25O15444 150 aa13.61□□□□□ -0.23
CLN3-250ENST00000636839 UQCR10Q9UDW1 63 aa13.61□□□□□ -0.23
CLN3-250ENST00000636839 MRPS16Q9Y3D3 137 aaKnown RBP13.6□□□□□ -0.23
CLN3-250ENST00000636839 SLC25A34Q6PIV7 304 aa13.59□□□□□ -0.23
CLN3-250ENST00000636839 UBE2WQ96B02 151 aa13.59□□□□□ -0.23
CLN3-250ENST00000636839 PRR34Q9NV39 138 aa13.59□□□□□ -0.23
CLN3-250ENST00000636839 IGHV3OR16-9A0A0B4J2B5 98 aa13.58□□□□□ -0.24
CLN3-250ENST00000636839 SS18Q15532 418 aa13.58□□□□□ -0.24
CLN3-250ENST00000636839 C5orf38Q86SI9 138 aa13.58□□□□□ -0.24
CLN3-250ENST00000636839 BOD1L2Q8IYS8 172 aa13.58□□□□□ -0.24
CLN3-250ENST00000636839 NUPR2A6NF83 97 aa13.57□□□□□ -0.24
CLN3-250ENST00000636839 HERVK_113P61574 105 aa13.57□□□□□ -0.24
CLN3-250ENST00000636839 SEC11AP67812 179 aa13.57□□□□□ -0.24
CLN3-250ENST00000636839 LINC01556Q5JQF7 62 aa13.57□□□□□ -0.24
CLN3-250ENST00000636839 CHCHD10Q8WYQ3 142 aaPredicted RBP13.57□□□□□ -0.24
CLN3-250ENST00000636839 SMIM1B2RUZ4 78 aa13.56□□□□□ -0.24
CLN3-250ENST00000636839 SIVA1O15304 175 aa13.56□□□□□ -0.24
CLN3-250ENST00000636839 DNAH10OSP0CZ25 163 aa13.56□□□□□ -0.24
CLN3-250ENST00000636839 IGHV1-58A0A0C4DH39 117 aa13.55□□□□□ -0.24
CLN3-250ENST00000636839 J3QQQ9 107 aa13.55□□□□□ -0.24
CLN3-250ENST00000636839 KLK5Q9Y337 293 aaPredicted RBP13.55□□□□□ -0.24
CLN3-250ENST00000636839 H3BRM9 83 aa13.54□□□□□ -0.24
CLN3-250ENST00000636839 LEPROTO15243 131 aa13.54□□□□□ -0.24
CLN3-250ENST00000636839 C2orf91Q6ZV80 131 aa13.54□□□□□ -0.24
CLN3-250ENST00000636839 Q9H8V8 135 aa13.53□□□□□ -0.24
CLN3-250ENST00000636839 HNRNPA3P51991 378 aaKnown RBP13.52□□□□□ -0.24
CLN3-250ENST00000636839 ZNF815PA8K554 130 aa13.52□□□□□ -0.25
CLN3-250ENST00000636839 CRPP02741 224 aa13.52□□□□□ -0.25
CLN3-250ENST00000636839 UPK3BQ9BT76 320 aa13.52□□□□□ -0.25
CLN3-250ENST00000636839 A0A087WZ39 114 aa13.51□□□□□ -0.25
CLN3-250ENST00000636839 IGLV5-39A0A0G2JS06 123 aa13.51□□□□□ -0.25
CLN3-250ENST00000636839 MYMXA0A1B0GTQ4 84 aa13.51□□□□□ -0.25
CLN3-250ENST00000636839 GAGE12HA6NDE8 117 aa13.51□□□□□ -0.25
CLN3-250ENST00000636839 FOXI1Q12951 378 aa13.51□□□□□ -0.25
CLN3-250ENST00000636839 CD164L2Q6UWJ8 174 aa13.51□□□□□ -0.25
CLN3-250ENST00000636839 PLEKHB2Q96CS7 222 aa13.51□□□□□ -0.25
CLN3-250ENST00000636839 LGALS3P17931 250 aaKnown RBP13.51□□□□□ -0.25
CLN3-250ENST00000636839 DLEU1O43261 78 aa13.5□□□□□ -0.25
CLN3-250ENST00000636839 UBE2DNLQ8IWF7 75 aa13.5□□□□□ -0.25
CLN3-250ENST00000636839 CBY1Q9Y3M2 126 aa13.5□□□□□ -0.25
CLN3-250ENST00000636839 Q9HAA7 133 aa13.49□□□□□ -0.25
CLN3-250ENST00000636839 DNAH1Q9P2D7 4330 aa13.49□□□□□ -0.25
CLN3-250ENST00000636839 MUC7Q8TAX7 377 aa13.49□□□□□ -0.25
CLN3-250ENST00000636839 KRTAP1-5Q9BYS1 174 aa13.47□□□□□ -0.25
CLN3-250ENST00000636839 KRTAP26-1Q6PEX3 210 aa13.47□□□□□ -0.25
CLN3-250ENST00000636839 TOMM7Q9P0U1 55 aa13.47□□□□□ -0.25
CLN3-250ENST00000636839 MIAQ16674 131 aa13.46□□□□□ -0.25
CLN3-250ENST00000636839 C10orf126Q8N4M7 172 aa13.46□□□□□ -0.25
CLN3-250ENST00000636839 M0R143 59 aa13.46□□□□□ -0.26
CLN3-250ENST00000636839 COX7A2LO14548 114 aa13.46□□□□□ -0.26
CLN3-250ENST00000636839 NDUFA12Q9UI09 145 aa13.46□□□□□ -0.26
CLN3-250ENST00000636839 TRAV8-4A0A0B4J246 113 aa13.44□□□□□ -0.26
CLN3-250ENST00000636839 IBA57-AS1B1ANH7 110 aa13.44□□□□□ -0.26
CLN3-250ENST00000636839 IGKV2D-24A0A075B6R9 120 aa13.43□□□□□ -0.26
CLN3-250ENST00000636839 SCGB1D4Q6XE38 83 aa13.43□□□□□ -0.26
CLN3-250ENST00000636839 COX7B2Q8TF08 81 aa13.43□□□□□ -0.26
CLN3-250ENST00000636839 ZNF625Q96I27 306 aaPredicted RBP13.43□□□□□ -0.26
CLN3-250ENST00000636839 WWC2-AS2Q96NR7 200 aa13.43□□□□□ -0.26
CLN3-250ENST00000636839 MALP21145 153 aa13.42□□□□□ -0.26
CLN3-250ENST00000636839 LINC00526Q96FQ7 95 aa13.42□□□□□ -0.26
CLN3-250ENST00000636839 C1orf43Q9BWL3 253 aa13.41□□□□□ -0.26
CLN3-250ENST00000636839 HINT1P49773 126 aaPredicted RBP13.4□□□□□ -0.26
CLN3-250ENST00000636839 A0A0J9YXY3 114 aa13.4□□□□□ -0.26
CLN3-250ENST00000636839 CASC10Q5T4H9 136 aa13.4□□□□□ -0.26
CLN3-250ENST00000636839 ORAOV1Q8WV07 137 aa13.4□□□□□ -0.26
CLN3-250ENST00000636839 SNHG12Q9BXW3 62 aa13.39□□□□□ -0.27
CLN3-250ENST00000636839 EREGO14944 169 aa13.39□□□□□ -0.27
CLN3-250ENST00000636839 NDUFA1O15239 70 aa13.39□□□□□ -0.27
CLN3-250ENST00000636839 BATFQ16520 125 aa13.39□□□□□ -0.27
CLN3-250ENST00000636839 C2orf82Q6UX34 121 aa13.39□□□□□ -0.27
CLN3-250ENST00000636839 HIGD1BQ9P298 99 aa13.39□□□□□ -0.27
CLN3-250ENST00000636839 KIAA0087Q14695 138 aa13.38□□□□□ -0.27
CLN3-250ENST00000636839 C6orf223Q8N319 242 aa13.37□□□□□ -0.27
CLN3-250ENST00000636839 VPS13DQ5THJ4 4388 aa13.37□□□□□ -0.27
CLN3-250ENST00000636839 C6orf226Q5I0X4 101 aa13.37□□□□□ -0.27
CLN3-250ENST00000636839 ADAMTSL4-AS1Q5T5F5 129 aa13.37□□□□□ -0.27
CLN3-250ENST00000636839 A0A0U1RRA0 63 aa13.36□□□□□ -0.27
CLN3-250ENST00000636839 LINC01561Q8N1V8 128 aa13.36□□□□□ -0.27
CLN3-250ENST00000636839 DNAH10Q8IVF4 4471 aa13.35□□□□□ -0.27
CLN3-250ENST00000636839 K7EP13 123 aa13.35□□□□□ -0.27
CLN3-250ENST00000636839 LITAFQ99732 161 aa13.35□□□□□ -0.27
CLN3-250ENST00000636839 Q8IZM0 81 aa13.34□□□□□ -0.27
CLN3-250ENST00000636839 PRSS2P07478 247 aa13.34□□□□□ -0.27
CLN3-250ENST00000636839 HIGD2BQ4VC39 106 aa13.34□□□□□ -0.27
CLN3-250ENST00000636839 BVES-AS1Q5T3Y7 98 aa13.34□□□□□ -0.27
CLN3-250ENST00000636839 DAND5Q8N907 189 aa13.34□□□□□ -0.27
CLN3-250ENST00000636839 HIST1H4GQ99525 98 aa13.34□□□□□ -0.27
CLN3-250ENST00000636839 C15orf56Q8N910 161 aa13.33□□□□□ -0.28
CLN3-250ENST00000636839 M0R2N4 97 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 176.3 ms