RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 LYNX1P0DP58 116 aa4.91□□□□□ -1.62
SCN1A-213ENST00000636759 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-213ENST00000636759 IGKV2-29A2NJV5 120 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-213ENST00000636759 UNQ9165/PRO28630Q6UXU0 137 aa4.91□□□□□ -1.62
SCN1A-213ENST00000636759 LINC00337Q8N6G1 96 aa4.91□□□□□ -1.62
SCN1A-213ENST00000636759 TMEM254Q8TBM7 123 aa4.91□□□□□ -1.62
SCN1A-213ENST00000636759 ITLN2Q8WWU7 325 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-213ENST00000636759 CACNA1BQ00975 2339 aa4.9□□□□□ -1.62
SCN1A-213ENST00000636759 DOPEY2Q9Y3R5 2298 aa4.9□□□□□ -1.62
SCN1A-213ENST00000636759 IBA57-AS1B1ANH7 110 aa4.9□□□□□ -1.62
SCN1A-213ENST00000636759 ITPR1Q14643 2758 aa4.9□□□□□ -1.62
SCN1A-213ENST00000636759 CELSR2Q9HCU4 2923 aa4.9□□□□□ -1.62
SCN1A-213ENST00000636759 A0A1W2PPR1 153 aa4.9□□□□□ -1.63
SCN1A-213ENST00000636759 TMEM256-PLSCR3K7ERE1 68 aa4.9□□□□□ -1.63
SCN1A-213ENST00000636759 RIF1Q5UIP0 2472 aaKnown RBP4.9□□□□□ -1.63
SCN1A-213ENST00000636759 APC2O95996 2303 aa4.9□□□□□ -1.63
SCN1A-213ENST00000636759 LINC00158P58513 81 aa4.9□□□□□ -1.63
SCN1A-213ENST00000636759 CRYBG3Q68DQ2 2970 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 Q8N3U1 123 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 MUC4Q99102 2169 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 IGHV3-73A0A0B4J1V6 119 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 NREPQ16612 68 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 IGLV5-39A0A0G2JS06 123 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 LINC01547P58512 204 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-213ENST00000636759 C19orf54Q5BKX5 351 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 TM2D3Q9BRN9 247 aa4.89□□□□□ -1.63
SCN1A-213ENST00000636759 SPTBN1Q01082 2364 aaKnown RBP4.88□□□□□ -1.63
SCN1A-213ENST00000636759 C11orf72Q8NBR9 251 aa4.88□□□□□ -1.63
SCN1A-213ENST00000636759 PRYO14603 147 aa4.88□□□□□ -1.63
SCN1A-213ENST00000636759 IGLV5-45A0A087WSX0 123 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 IGHV3-16A0A0C4DH30 117 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 ABCA2Q9BZC7 2435 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 C6orf223Q8N319 242 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 TOMM7Q9P0U1 55 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 TRBV7-4A0A0J9YYF1 115 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 SMIM1B2RUZ4 78 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 PSPHP1O15172 72 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 LY6HO94772 140 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 Q6ZTI0 123 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-213ENST00000636759 CCDC140Q96MF4 163 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 LINC00467Q9BRT7 94 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 ACACAQ13085 2346 aa4.87□□□□□ -1.63
SCN1A-213ENST00000636759 IGHV7-81A0A0B4J1V7 117 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 KLLNB2CW77 178 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 PRB1P04280 392 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 RBM12B-AS1Q9P1G2 102 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 SORL1Q92673 2214 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 PCNX1Q96RV3 2341 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 LRCOL1A6NCL2 159 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 COX6A2Q02221 97 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 FAM104AQ969W3 186 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 IGKV2-28A0A075B6P5 120 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 TRBV10-1A0A0K0K1A3 114 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 IGKV2D-28P01615 120 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 IGKV3-20P01619 116 aa4.86□□□□□ -1.63
SCN1A-213ENST00000636759 IGHV3-38A0A0C4DH36 116 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 LYRM9A8MSI8 78 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 C19orf84I3L1E1 186 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 Q6ZVQ6 151 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 KTN1-AS1Q86SY8 53 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 CHCHD7Q9BUK0 85 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 CEP295Q9C0D2 2601 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 HTN1P15515 57 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 ZFP36P26651 326 aaKnown RBP4.85□□□□□ -1.63
SCN1A-213ENST00000636759 CXCL6P80162 114 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 LINC00242Q5T6M2 205 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 BPY2O14599 106 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 ERC2-IT1O76042 136 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 GNLYP22749 145 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 UBE2BP63146 152 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 MINOS1Q5TGZ0 78 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 Q9UF83 564 aa4.85□□□□□ -1.63
SCN1A-213ENST00000636759 ATP6V0E1O15342 81 aa4.84□□□□□ -1.63
SCN1A-213ENST00000636759 IGHV3OR16-12A0A075B7B8 117 aa4.84□□□□□ -1.63
SCN1A-213ENST00000636759 CCL18P55774 89 aa4.84□□□□□ -1.63
SCN1A-213ENST00000636759 G3V318 75 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 Q1T7F1 81 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 SCXQ7RTU7 201 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 MINOS1-NBL1R4GNA1 71 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 TLN1Q9Y490 2541 aaKnown RBP4.83□□□□□ -1.64
SCN1A-213ENST00000636759 LMO4P61968 165 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 Q8N814 137 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 Q8N9W7 124 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 APOC4P55056 127 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 PROK1P58294 105 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 SPTSSBQ8NFR3 76 aa4.83□□□□□ -1.64
SCN1A-213ENST00000636759 BBC3Q96PG8 261 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-213ENST00000636759 PDE6GP18545 87 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 COX7B2Q8TF08 81 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 FAM19A3Q7Z5A8 133 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 RHPN1-AS1Q9BWJ2 59 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 MED13LQ71F56 2210 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 UBE2L6O14933 153 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 Q6ZQT0 140 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 NTM-AS1Q6ZSK4 140 aa4.82□□□□□ -1.64
SCN1A-213ENST00000636759 hDV103S1A0JD37 113 aa4.81□□□□□ -1.64
SCN1A-213ENST00000636759 NDUFA4O00483 81 aa4.81□□□□□ -1.64
SCN1A-213ENST00000636759 SPINK13Q1W4C9 94 aa4.81□□□□□ -1.64
SCN1A-213ENST00000636759 NDUFS5O43920 106 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms