RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 LINC01549A6NIU2 74 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 IGIPA6NJ69 53 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 COX7A2LO14548 114 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 LINC00614P0C842 121 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 MALP21145 153 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 HIGD2BQ4VC39 106 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 PAPPA-AS1Q5QFB9 102 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 C15orf56Q8N910 161 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 TIMM17AQ99595 171 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 VCX2Q9H322 139 aa11.61□□□□□ -0.55
CLN3-247ENST00000636351 COLCA2A8K830 154 aa11.6□□□□□ -0.55
CLN3-247ENST00000636351 NPSP0C0P6 89 aa11.6□□□□□ -0.55
CLN3-247ENST00000636351 ZC2HC1BQ5TFG8 222 aa11.6□□□□□ -0.55
CLN3-247ENST00000636351 DNAH8Q96JB1 4490 aa11.59□□□□□ -0.55
CLN3-247ENST00000636351 IGHV1-58A0A0C4DH39 117 aa11.59□□□□□ -0.55
CLN3-247ENST00000636351 ERASQ7Z444 233 aa11.59□□□□□ -0.55
CLN3-247ENST00000636351 C5orf38Q86SI9 138 aa11.59□□□□□ -0.55
CLN3-247ENST00000636351 FAM30AQ9NZY2 134 aa11.59□□□□□ -0.55
CLN3-247ENST00000636351 PMCHL1Q16048 86 aa11.58□□□□□ -0.56
CLN3-247ENST00000636351 LINC01620Q4KN68 170 aa11.58□□□□□ -0.56
CLN3-247ENST00000636351 URB1-AS1Q96HZ7 61 aa11.58□□□□□ -0.56
CLN3-247ENST00000636351 HBDP02042 147 aa11.57□□□□□ -0.56
CLN3-247ENST00000636351 LINC00173Q6ZV60 143 aa11.57□□□□□ -0.56
CLN3-247ENST00000636351 BAGE3Q86Y29 109 aa11.57□□□□□ -0.56
CLN3-247ENST00000636351 AMELXQ99217 191 aa11.57□□□□□ -0.56
CLN3-247ENST00000636351 GVQW2A0A096LPI5 108 aaPredicted RBP11.56□□□□□ -0.56
CLN3-247ENST00000636351 J3QL48 77 aa11.56□□□□□ -0.56
CLN3-247ENST00000636351 UBE2D1P51668 147 aa11.56□□□□□ -0.56
CLN3-247ENST00000636351 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.55□□□□□ -0.56
CLN3-247ENST00000636351 ATP6V1G1O75348 118 aa11.55□□□□□ -0.56
CLN3-247ENST00000636351 CHCHD1Q96BP2 118 aaKnown RBP11.55□□□□□ -0.56
CLN3-247ENST00000636351 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.54□□□□□ -0.56
CLN3-247ENST00000636351 ZNF561-AS1K7EIQ3 104 aa11.54□□□□□ -0.56
CLN3-247ENST00000636351 APOMO95445 188 aa11.54□□□□□ -0.56
CLN3-247ENST00000636351 S100A1P23297 94 aa11.54□□□□□ -0.56
CLN3-247ENST00000636351 CNBPP62633 177 aaKnown RBP11.54□□□□□ -0.56
CLN3-247ENST00000636351 LINC00242Q5T6M2 205 aa11.54□□□□□ -0.56
CLN3-247ENST00000636351 A0A096LNJ9 63 aa11.53□□□□□ -0.56
CLN3-247ENST00000636351 IGHV3OR16-9A0A0B4J2B5 98 aa11.52□□□□□ -0.57
CLN3-247ENST00000636351 HSBP1O75506 76 aa11.52□□□□□ -0.57
CLN3-247ENST00000636351 NDUFA6P56556 154 aa11.52□□□□□ -0.57
CLN3-247ENST00000636351 LINC00526Q96FQ7 95 aa11.52□□□□□ -0.57
CLN3-247ENST00000636351 SEC11AP67812 179 aa11.51□□□□□ -0.57
CLN3-247ENST00000636351 COX6A2Q02221 97 aa11.51□□□□□ -0.57
CLN3-247ENST00000636351 SPAG11BQ08648 103 aa11.51□□□□□ -0.57
CLN3-247ENST00000636351 ORAOV1Q8WV07 137 aa11.51□□□□□ -0.57
CLN3-247ENST00000636351 GEMIN7Q9H840 131 aaKnown RBP11.51□□□□□ -0.57
CLN3-247ENST00000636351 ATP5LO75964 103 aa11.5□□□□□ -0.57
CLN3-247ENST00000636351 PLA2G1BP04054 148 aaKnown RBP11.5□□□□□ -0.57
CLN3-247ENST00000636351 PMVKQ15126 192 aa11.5□□□□□ -0.57
CLN3-247ENST00000636351 C9orf163Q8N9P6 203 aa11.5□□□□□ -0.57
CLN3-247ENST00000636351 IGHV3-64A0A075B6Q5 118 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 A0A087WZ39 114 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 SLPIP03973 132 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 HERVK_113P63121 156 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 PDZD11Q5EBL8 140 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 LINC00528Q8N1L1 170 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 CARD19Q96LW7 228 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 CST9LQ9H4G1 147 aa11.49□□□□□ -0.57
CLN3-247ENST00000636351 IGLV4-69A0A075B6H9 119 aa11.48□□□□□ -0.57
CLN3-247ENST00000636351 A0A0J9YXV3 536 aa11.48□□□□□ -0.57
CLN3-247ENST00000636351 SERF1AO75920 110 aa11.48□□□□□ -0.57
CLN3-247ENST00000636351 Q6ZSA8 131 aa11.48□□□□□ -0.57
CLN3-247ENST00000636351 OR10D4PQ8NGN7 298 aa11.48□□□□□ -0.57
CLN3-247ENST00000636351 FAM19A2Q8N3H0 131 aa11.47□□□□□ -0.57
CLN3-247ENST00000636351 LINC00469Q8N7U9 141 aa11.47□□□□□ -0.57
CLN3-247ENST00000636351 PACRGQ96M98 296 aaPredicted RBP11.47□□□□□ -0.57
CLN3-247ENST00000636351 CAMK2N2Q96S95 79 aa11.47□□□□□ -0.57
CLN3-247ENST00000636351 SYCNQ0VAF6 134 aa11.46□□□□□ -0.57
CLN3-247ENST00000636351 FAM19A3Q7Z5A8 133 aa11.46□□□□□ -0.57
CLN3-247ENST00000636351 TINCRA0A1B0GVN0 87 aa11.45□□□□□ -0.58
CLN3-247ENST00000636351 KRTAP29-1A8MX34 341 aaPredicted RBP11.45□□□□□ -0.58
CLN3-247ENST00000636351 LINC01561Q8N1V8 128 aa11.44□□□□□ -0.58
CLN3-247ENST00000636351 CDKN2A-AS1Q9UH64 79 aa11.44□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BKO60814 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BJP06899 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 PRSS2P07478 247 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BOP23527 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BBP33778 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BDP58876 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 LINC00310P59036 64 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BCP62807 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST2H2BEQ16778 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.43□□□□□ -0.58
CLN3-247ENST00000636351 Q6ZRU5 148 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BHQ93079 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 IFI27L1Q96BM0 104 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 C2orf48Q96LS8 159 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BNQ99877 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 HIST1H2BMQ99879 126 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 CHAC1Q9BUX1 264 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 TOMM7Q9P0U1 55 aa11.43□□□□□ -0.58
CLN3-247ENST00000636351 SDIM1Q6ZPB5 146 aa11.42□□□□□ -0.58
CLN3-247ENST00000636351 SCXQ7RTU7 201 aa11.42□□□□□ -0.58
CLN3-247ENST00000636351 PKIGQ9Y2B9 76 aa11.42□□□□□ -0.58
CLN3-247ENST00000636351 NDUFA1O15239 70 aa11.41□□□□□ -0.58
CLN3-247ENST00000636351 LEPROTL1O95214 131 aa11.4□□□□□ -0.58
CLN3-247ENST00000636351 IGLC3P0DOY3 106 aa11.4□□□□□ -0.58
CLN3-247ENST00000636351 IGLV5-45A0A087WSX0 123 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 IGKV2-24A0A0C4DH68 120 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms