RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 CHCHD10Q8WYQ3 142 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-210ENST00000635776 LINC01600Q96MT4 127 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 SS18L2Q9UHA2 77 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-210ENST00000635776 BAALC-AS2P0C853 105 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 C1orf43Q9BWL3 253 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 IGHV3OR16-9A0A0B4J2B5 98 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 MRAPQ8TCY5 172 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 A8MZ25 164 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 WIPF1O43516 503 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 DAND5Q8N907 189 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 TRIOO75962 3097 aa3.22□□□□□ -1.89
SCN1A-210ENST00000635776 NTM-AS1Q6ZSK4 140 aa3.21□□□□□ -1.89
SCN1A-210ENST00000635776 IMUPQ9GZP8 106 aa3.21□□□□□ -1.89
SCN1A-210ENST00000635776 X6R8D5 127 aa3.21□□□□□ -1.89
SCN1A-210ENST00000635776 Q6Q795 121 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 KLK5Q9Y337 293 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-210ENST00000635776 REV3LO60673 3130 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 LINC00694P0DN24 101 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 TMEM256-PLSCR3K7ERE1 68 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 PTPN13Q12923 2485 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 LRRK2Q5S007 2527 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 CCDC168Q8NDH2 2452 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 IGHV4-30-4P0DP06 118 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 LITAFQ99732 161 aa3.21□□□□□ -1.9
SCN1A-210ENST00000635776 C11orf68Q9H3H3 251 aaKnown RBP3.21□□□□□ -1.9
SCN1A-210ENST00000635776 PLAC8L1A1L4L8 177 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 LINC00269Q8N2A0 174 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 WFDC10AQ9H1F0 79 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 CCL18P55774 89 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 LINC00643Q86TS7 51 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 GIG44P09565 113 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-210ENST00000635776 CAMK2N2Q96S95 79 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 USP9YO00507 2555 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-210ENST00000635776 C11orf45Q8TAV5 145 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 C2CD3Q4AC94 2353 aa3.2□□□□□ -1.9
SCN1A-210ENST00000635776 ADAMTSL4-AS1Q5T5F5 129 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 TRAV10A0A0B4J240 114 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 COX6A2Q02221 97 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 ATP5EP2Q5VTU8 51 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 LOC100131303A0A0U1RQF7 123 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 PRM2P04554 102 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 C2orf48Q96LS8 159 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 UBL5Q9BZL1 73 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 USP9XQ93008 2570 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-210ENST00000635776 KLK12Q9UKR0 248 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 IGLV4-60A0A075B6I1 120 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 EGFEM1PQ0D2K5 195 aa3.19□□□□□ -1.9
SCN1A-210ENST00000635776 SPTBN5Q9NRC6 3674 aaKnown RBP3.18□□□□□ -1.9
SCN1A-210ENST00000635776 A0A096LPF7 62 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 SMIM20Q8N5G0 67 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 GAGE2AQ6NT46 116 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 CLEC2BQ92478 149 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 NKAPP1Q8N9T2 125 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 DIRC1Q969H9 104 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 A0A0C4DFX4 3053 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 GVQW2A0A096LPI5 108 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-210ENST00000635776 LECT2O14960 151 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 AKAP13Q12802 2813 aa3.18□□□□□ -1.9
SCN1A-210ENST00000635776 PRRC2CQ9Y520 2896 aaKnown RBP3.17□□□□□ -1.9
SCN1A-210ENST00000635776 A0A0J9YWU9 116 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 C14orf177Q52M58 125 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 Q8NAQ8 132 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 CDIP1Q9H305 208 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 LAMTOR3Q9UHA4 124 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 PRUNE2Q8WUY3 3088 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 KPRPQ5T749 579 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-210ENST00000635776 SMR3AQ99954 134 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 DEFB131BA0A096LNP1 70 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 DEFB121Q5J5C9 76 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 MYO9AB2RTY4 2548 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 IGKV2D-24A0A075B6R9 120 aa3.17□□□□□ -1.9
SCN1A-210ENST00000635776 M0R378 163 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 CLPSL2Q6UWE3 100 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 LYPD5Q6UWN5 251 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 DSCR8Q96T75 97 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 IGLV10-54A0A075B6I4 117 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 hADV29S1A0JD25 119 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-210ENST00000635776 SMIM11BQ8TCY0 68 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 TRBV7-6A0A0J9YX20 115 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 UBE2DNLQ8IWF7 75 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 FAM104AQ969W3 186 aa3.16□□□□□ -1.9
SCN1A-210ENST00000635776 COX7BP24311 80 aa3.15□□□□□ -1.9
SCN1A-210ENST00000635776 LINC01556Q5JQF7 62 aa3.15□□□□□ -1.9
SCN1A-210ENST00000635776 SYCNQ0VAF6 134 aa3.15□□□□□ -1.9
SCN1A-210ENST00000635776 PRR34Q9NV39 138 aa3.15□□□□□ -1.9
SCN1A-210ENST00000635776 TEX49A0A1B0GTD5 131 aa3.15□□□□□ -1.9
SCN1A-210ENST00000635776 ATOX1O00244 68 aa3.15□□□□□ -1.9
SCN1A-210ENST00000635776 SMCPP49901 116 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-210ENST00000635776 Q9UF83 564 aa3.15□□□□□ -1.9
SCN1A-210ENST00000635776 DEFB4AO15263 64 aa3.15□□□□□ -1.91
SCN1A-210ENST00000635776 XGP55808 180 aa3.15□□□□□ -1.91
SCN1A-210ENST00000635776 RBM3P98179 157 aaKnown RBP3.15□□□□□ -1.91
SCN1A-210ENST00000635776 CYSRT1A8MQ03 144 aa3.15□□□□□ -1.91
SCN1A-210ENST00000635776 ANKRD17O75179 2603 aaKnown RBP3.15□□□□□ -1.91
SCN1A-210ENST00000635776 LAMA1P25391 3075 aa3.15□□□□□ -1.91
SCN1A-210ENST00000635776 B5MCH6 92 aa3.14□□□□□ -1.91
SCN1A-210ENST00000635776 F8WEM9 126 aa3.14□□□□□ -1.91
SCN1A-210ENST00000635776 A0A1B0GW54 56 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms