RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TRBV10-1A0A0K0K1A3 114 aa9.18□□□□□ -0.94
CCDC88A-214ENST00000621814 TRBV10-2A0A0K0K1G8 114 aa9.18□□□□□ -0.94
CCDC88A-214ENST00000621814 H7C423 109 aa9.18□□□□□ -0.94
CCDC88A-214ENST00000621814 CHCHD5Q9BSY4 110 aa9.18□□□□□ -0.94
CCDC88A-214ENST00000621814 IGLV5-45A0A087WSX0 123 aa9.17□□□□□ -0.94
CCDC88A-214ENST00000621814 A0A096LPF7 62 aa9.17□□□□□ -0.94
CCDC88A-214ENST00000621814 SOSTDC1Q6X4U4 206 aa9.17□□□□□ -0.94
CCDC88A-214ENST00000621814 C16orf74Q96GX8 76 aa9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 C11orf68Q9H3H3 251 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 PLAC8L1A1L4L8 177 aa9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 CRLF1O75462 422 aa9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 HIVEP2P31629 2446 aa9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 FASNP49327 2511 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 A0A1B0GV72 72 aa9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 UBE2WQ96B02 151 aa9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 CLUHP3Q96NS8 147 aa9.16□□□□□ -0.94
CCDC88A-214ENST00000621814 PDZD2O15018 2839 aa9.15□□□□□ -0.94
CCDC88A-214ENST00000621814 IGLV5-39A0A0G2JS06 123 aa9.15□□□□□ -0.94
CCDC88A-214ENST00000621814 IFITM1P13164 125 aa9.15□□□□□ -0.94
CCDC88A-214ENST00000621814 TEX29Q8N6K0 151 aa9.15□□□□□ -0.94
CCDC88A-214ENST00000621814 IGLV4-60A0A075B6I1 120 aa9.15□□□□□ -0.95
CCDC88A-214ENST00000621814 HELZ2Q9BYK8 2649 aaKnown RBP9.14□□□□□ -0.95
CCDC88A-214ENST00000621814 TRAV8-4A0A0B4J246 113 aa9.14□□□□□ -0.95
CCDC88A-214ENST00000621814 IGLV1-51P01701 117 aa9.14□□□□□ -0.95
CCDC88A-214ENST00000621814 TMEM262E9PQX1 116 aa9.14□□□□□ -0.95
CCDC88A-214ENST00000621814 TIMM17BO60830 172 aa9.14□□□□□ -0.95
CCDC88A-214ENST00000621814 KRTAP1-1Q07627 177 aa9.13□□□□□ -0.95
CCDC88A-214ENST00000621814 C5orf38Q86SI9 138 aa9.13□□□□□ -0.95
CCDC88A-214ENST00000621814 F5H768 121 aa9.13□□□□□ -0.95
CCDC88A-214ENST00000621814 PF4P02776 101 aa9.13□□□□□ -0.95
CCDC88A-214ENST00000621814 CLPSL2Q6UWE3 100 aa9.13□□□□□ -0.95
CCDC88A-214ENST00000621814 C19orf73Q9NVV2 129 aa9.13□□□□□ -0.95
CCDC88A-214ENST00000621814 RNASE1P07998 156 aaKnown RBP9.13□□□□□ -0.95
CCDC88A-214ENST00000621814 LST1O00453 97 aa9.12□□□□□ -0.95
CCDC88A-214ENST00000621814 PFN2P35080 140 aa9.12□□□□□ -0.95
CCDC88A-214ENST00000621814 CSDC2Q9Y534 153 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-214ENST00000621814 DEFB4AO15263 64 aa9.12□□□□□ -0.95
CCDC88A-214ENST00000621814 SNCGO76070 127 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 LINC00158P58513 81 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 CSNK1G2-AS1Q8NCQ2 148 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 FHL2Q14192 279 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 VWFP04275 2813 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 TRBV6-4A0A1B0GX49 114 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 MIR7-3HGQ8N6C7 128 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 HECTD1Q9ULT8 2610 aa9.11□□□□□ -0.95
CCDC88A-214ENST00000621814 TRBV6-8A0A0A6YYG3 113 aa9.1□□□□□ -0.95
CCDC88A-214ENST00000621814 CMC4P56277 68 aaPredicted RBP9.1□□□□□ -0.95
CCDC88A-214ENST00000621814 TTC32Q5I0X7 151 aa9.1□□□□□ -0.95
CCDC88A-214ENST00000621814 COX7B2Q8TF08 81 aa9.1□□□□□ -0.95
CCDC88A-214ENST00000621814 UNC79Q9P2D8 2635 aa9.09□□□□□ -0.95
CCDC88A-214ENST00000621814 LINC00482Q8N8I6 264 aa9.09□□□□□ -0.95
CCDC88A-214ENST00000621814 XCL1P47992 114 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 GYPEP15421 78 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 C15orf53Q8NAA6 179 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 C16orf95Q9H693 158 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 GAGE2BQ13066 116 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 GAGE2EQ4V326 116 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 ANAPC13Q9BS18 74 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 Q9HAA7 133 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 GAGE2DQ9UEU5 116 aa9.08□□□□□ -0.96
CCDC88A-214ENST00000621814 KRTAP10-3P60369 221 aa9.07□□□□□ -0.96
CCDC88A-214ENST00000621814 H3BT86 120 aa9.07□□□□□ -0.96
CCDC88A-214ENST00000621814 M0QXV9 152 aa9.07□□□□□ -0.96
CCDC88A-214ENST00000621814 HERV-K104P63124 156 aa9.07□□□□□ -0.96
CCDC88A-214ENST00000621814 SPATA3Q8NHX4 192 aa9.07□□□□□ -0.96
CCDC88A-214ENST00000621814 RNF183Q96D59 192 aa9.07□□□□□ -0.96
CCDC88A-214ENST00000621814 OVOL2Q9BRP0 275 aa9.07□□□□□ -0.96
CCDC88A-214ENST00000621814 TRAV26-1A0A087WT03 109 aa9.06□□□□□ -0.96
CCDC88A-214ENST00000621814 COX7A2LO14548 114 aa9.06□□□□□ -0.96
CCDC88A-214ENST00000621814 COPS9Q8WXC6 57 aa9.06□□□□□ -0.96
CCDC88A-214ENST00000621814 SND1-IT1Q9HBX3 110 aa9.06□□□□□ -0.96
CCDC88A-214ENST00000621814 HILS1P60008 231 aa9.06□□□□□ -0.96
CCDC88A-214ENST00000621814 FAM19A3Q7Z5A8 133 aa9.06□□□□□ -0.96
CCDC88A-214ENST00000621814 FAM218AQ96MZ4 157 aa9.06□□□□□ -0.96
CCDC88A-214ENST00000621814 C6orf226Q5I0X4 101 aa9.05□□□□□ -0.96
CCDC88A-214ENST00000621814 CRPP02741 224 aa9.05□□□□□ -0.96
CCDC88A-214ENST00000621814 OR13C6PQ8NH95 151 aa9.05□□□□□ -0.96
CCDC88A-214ENST00000621814 ANK3Q12955 4377 aaKnown RBP9.04□□□□□ -0.96
CCDC88A-214ENST00000621814 PAX4O43316 350 aa9.04□□□□□ -0.96
CCDC88A-214ENST00000621814 LINC00337Q8N6G1 96 aa9.04□□□□□ -0.96
CCDC88A-214ENST00000621814 BAALC-AS2P0C853 105 aa9.03□□□□□ -0.96
CCDC88A-214ENST00000621814 SHISA2Q6UWI4 295 aa9.03□□□□□ -0.96
CCDC88A-214ENST00000621814 IGLV10-54A0A075B6I4 117 aa9.03□□□□□ -0.96
CCDC88A-214ENST00000621814 IGHV3OR16-9A0A0B4J2B5 98 aa9.03□□□□□ -0.96
CCDC88A-214ENST00000621814 DEFB135Q30KP9 77 aa9.03□□□□□ -0.96
CCDC88A-214ENST00000621814 LINC00959A0A1B0GUT2 108 aa9.02□□□□□ -0.97
CCDC88A-214ENST00000621814 CITED1Q99966 193 aa9.02□□□□□ -0.97
CCDC88A-214ENST00000621814 J3QKU1 62 aa9.02□□□□□ -0.97
CCDC88A-214ENST00000621814 ATP5G1P05496 136 aa9.02□□□□□ -0.97
CCDC88A-214ENST00000621814 FAM222AQ5U5X8 452 aa9.02□□□□□ -0.97
CCDC88A-214ENST00000621814 Q8N3U1 123 aa9.02□□□□□ -0.97
CCDC88A-214ENST00000621814 IGKV2-28A0A075B6P5 120 aa9.01□□□□□ -0.97
CCDC88A-214ENST00000621814 IGKV2D-28P01615 120 aa9.01□□□□□ -0.97
CCDC88A-214ENST00000621814 CCL18P55774 89 aa9.01□□□□□ -0.97
CCDC88A-214ENST00000621814 FAM110AQ9BQ89 295 aa9.01□□□□□ -0.97
CCDC88A-214ENST00000621814 HTN3P15516 51 aa9.01□□□□□ -0.97
CCDC88A-214ENST00000621814 TRAV13-2A0A0B4J235 113 aa9□□□□□ -0.97
CCDC88A-214ENST00000621814 TENM1Q9UKZ4 2725 aa9□□□□□ -0.97
CCDC88A-214ENST00000621814 A0A087WZ39 114 aa8.99□□□□□ -0.97
CCDC88A-214ENST00000621814 SMIM11BQ8TCY0 68 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms