RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 LINC00474Q9P2X8 69 aa8.14□□□□□ -1.11
LIG1-212ENST00000596549 PKIGQ9Y2B9 76 aa8.14□□□□□ -1.11
LIG1-212ENST00000596549 HMCN2Q8NDA2 5059 aa8.13□□□□□ -1.11
LIG1-212ENST00000596549 IGLV4-3A0A075B6K6 122 aa8.13□□□□□ -1.11
LIG1-212ENST00000596549 LOC107984640A0A0U1RRK4 108 aa8.13□□□□□ -1.11
LIG1-212ENST00000596549 IFITM10A6NMD0 228 aa8.13□□□□□ -1.11
LIG1-212ENST00000596549 PRSS47A8MTI9 375 aa8.13□□□□□ -1.11
LIG1-212ENST00000596549 RAB14P61106 215 aa8.13□□□□□ -1.11
LIG1-212ENST00000596549 APOMO95445 188 aa8.12□□□□□ -1.11
LIG1-212ENST00000596549 MT-ND4LP03901 98 aa8.12□□□□□ -1.11
LIG1-212ENST00000596549 IFI27P40305 119 aaPredicted RBP8.12□□□□□ -1.11
LIG1-212ENST00000596549 IFITM2Q01629 132 aa8.12□□□□□ -1.11
LIG1-212ENST00000596549 GAGE2BQ13066 116 aa8.12□□□□□ -1.11
LIG1-212ENST00000596549 OR10D4PQ8NGN7 298 aa8.12□□□□□ -1.11
LIG1-212ENST00000596549 ORAOV1Q8WV07 137 aa8.12□□□□□ -1.11
LIG1-212ENST00000596549 LAMTOR2Q9Y2Q5 125 aa8.12□□□□□ -1.11
LIG1-212ENST00000596549 A0A0J9YXV3 536 aa8.11□□□□□ -1.11
LIG1-212ENST00000596549 LOC389332A0A1B0GUA5 103 aa8.11□□□□□ -1.11
LIG1-212ENST00000596549 A0A1W2PNN7 141 aa8.11□□□□□ -1.11
LIG1-212ENST00000596549 SERTAD4-AS1Q5TG53 156 aa8.11□□□□□ -1.11
LIG1-212ENST00000596549 LINC00173Q6ZV60 143 aa8.11□□□□□ -1.11
LIG1-212ENST00000596549 MAP1LC3AQ9H492 121 aa8.11□□□□□ -1.11
LIG1-212ENST00000596549 PYGO1Q9Y3Y4 419 aa8.11□□□□□ -1.11
LIG1-212ENST00000596549 RAB5AP20339 215 aa8.1□□□□□ -1.11
LIG1-212ENST00000596549 RPL18AQ02543 176 aaKnown RBP8.1□□□□□ -1.11
LIG1-212ENST00000596549 LINC00242Q5T6M2 205 aa8.1□□□□□ -1.11
LIG1-212ENST00000596549 C10orf25Q5T742 122 aa8.09□□□□□ -1.11
LIG1-212ENST00000596549 Q8N8P6 123 aa8.09□□□□□ -1.11
LIG1-212ENST00000596549 TMEM141Q96I45 108 aa8.09□□□□□ -1.11
LIG1-212ENST00000596549 MRPL35Q9NZE8 188 aaKnown RBP8.09□□□□□ -1.11
LIG1-212ENST00000596549 UBE2D1P51668 147 aa8.08□□□□□ -1.12
LIG1-212ENST00000596549 KIAA0087Q14695 138 aa8.08□□□□□ -1.12
LIG1-212ENST00000596549 RNF151Q2KHN1 245 aa8.08□□□□□ -1.12
LIG1-212ENST00000596549 C9orf116Q5BN46 136 aaPredicted RBP8.08□□□□□ -1.12
LIG1-212ENST00000596549 ZC2HC1BQ5TFG8 222 aa8.08□□□□□ -1.12
LIG1-212ENST00000596549 C2orf66Q6UXQ4 117 aa8.08□□□□□ -1.12
LIG1-212ENST00000596549 C6orf48Q9UBA6 75 aa8.08□□□□□ -1.12
LIG1-212ENST00000596549 A0A087WZ39 114 aa8.07□□□□□ -1.12
LIG1-212ENST00000596549 TGIF2-C20orf24A0A0A6YYL0 155 aa8.07□□□□□ -1.12
LIG1-212ENST00000596549 CYSLTR1Q9Y271 337 aa8.07□□□□□ -1.12
LIG1-212ENST00000596549 TMEM218A2RU14 115 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 NDUFA1O15239 70 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 UQCC3Q6UW78 93 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 UNQ6190/PRO20217Q6UXQ8 127 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 TEX43Q6ZNM6 134 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 Q6ZRP5 223 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 IMMP2LQ96T52 175 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 AMELXQ99217 191 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 PLA2G2DQ9UNK4 145 aa8.06□□□□□ -1.12
LIG1-212ENST00000596549 TNXBP22105 4242 aa8.05□□□□□ -1.12
LIG1-212ENST00000596549 IGIPA6NJ69 53 aa8.05□□□□□ -1.12
LIG1-212ENST00000596549 F8WDY8 70 aa8.05□□□□□ -1.12
LIG1-212ENST00000596549 TLX1NBP0CAT3 122 aa8.05□□□□□ -1.12
LIG1-212ENST00000596549 SRSF9Q13242 221 aaKnown RBP eCLIP8.05□□□□□ -1.12
LIG1-212ENST00000596549 ORMDL2Q53FV1 153 aa8.05□□□□□ -1.12
LIG1-212ENST00000596549 PHF5AQ7RTV0 110 aaKnown RBP8.05□□□□□ -1.12
LIG1-212ENST00000596549 LINC01600Q96MT4 127 aa8.05□□□□□ -1.12
LIG1-212ENST00000596549 CTDSP1Q9GZU7 261 aa8.05□□□□□ -1.12
LIG1-212ENST00000596549 FAM168BA1KXE4 195 aa8.04□□□□□ -1.12
LIG1-212ENST00000596549 K7EMI3 77 aa8.04□□□□□ -1.12
LIG1-212ENST00000596549 ODF1Q14990 250 aa8.04□□□□□ -1.12
LIG1-212ENST00000596549 KIAA1644Q3SXP7 199 aa8.04□□□□□ -1.12
LIG1-212ENST00000596549 SPINK6Q6UWN8 80 aa8.04□□□□□ -1.12
LIG1-212ENST00000596549 C2orf82Q6UX34 121 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 Q6ZN92 141 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 FAM19A3Q7Z5A8 133 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 KRTAP11-1Q8IUC1 163 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 KRTAP7-1Q8IUC3 87 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 C2orf88Q9BSF0 95 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 SEC11CQ9BY50 192 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 NXT2Q9NPJ8 142 aaKnown RBP8.03□□□□□ -1.12
LIG1-212ENST00000596549 PSORS1C2Q9UIG4 136 aa8.03□□□□□ -1.12
LIG1-212ENST00000596549 TRAV9-1A0A075B6T8 112 aa8.02□□□□□ -1.13
LIG1-212ENST00000596549 NPSP0C0P6 89 aa8.02□□□□□ -1.13
LIG1-212ENST00000596549 LINC01561Q8N1V8 128 aa8.02□□□□□ -1.13
LIG1-212ENST00000596549 COMMD7Q86VX2 200 aa8.01□□□□□ -1.13
LIG1-212ENST00000596549 TRBV30A0A0K0K1B3 111 aa8□□□□□ -1.13
LIG1-212ENST00000596549 GAGE2EQ4V326 116 aa8□□□□□ -1.13
LIG1-212ENST00000596549 FAM19A5Q7Z5A7 132 aaPredicted RBP8□□□□□ -1.13
LIG1-212ENST00000596549 TOMM6Q96B49 74 aa8□□□□□ -1.13
LIG1-212ENST00000596549 TIMM17AQ99595 171 aa8□□□□□ -1.13
LIG1-212ENST00000596549 VCX2Q9H322 139 aa8□□□□□ -1.13
LIG1-212ENST00000596549 GAGE2DQ9UEU5 116 aa8□□□□□ -1.13
LIG1-212ENST00000596549 C9orf129Q5T035 196 aaKnown RBP7.99□□□□□ -1.13
LIG1-212ENST00000596549 LINC01546A6NGU7 62 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 NDUFC2-KCTD14E9PQ53 114 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 MT-ND6P03923 174 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 KRTAP10-8P60410 259 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 C1orf137Q5JT78 98 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 C10orf91Q5T1B1 145 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 REG3GQ6UW15 175 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 ALKBH7Q9BT30 221 aaPredicted RBP7.98□□□□□ -1.13
LIG1-212ENST00000596549 GNB1LQ9BYB4 327 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 CDKN2A-AS1Q9UH64 79 aa7.98□□□□□ -1.13
LIG1-212ENST00000596549 Q8IZM0 81 aa7.97□□□□□ -1.13
LIG1-212ENST00000596549 TOMM7Q9P0U1 55 aa7.97□□□□□ -1.13
LIG1-212ENST00000596549 CARHSP1Q9Y2V2 147 aaKnown RBP7.97□□□□□ -1.13
LIG1-212ENST00000596549 M0QXV9 152 aa7.96□□□□□ -1.14
LIG1-212ENST00000596549 S100PP25815 95 aa7.96□□□□□ -1.14
LIG1-212ENST00000596549 HERVK_113P63121 156 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms