RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 UBE2D1P51668 147 aa5.94□□□□□ -1.46
LIG1-209ENST00000596104 RPL39P62891 51 aaKnown RBP5.94□□□□□ -1.46
LIG1-209ENST00000596104 GAGE2EQ4V326 116 aa5.94□□□□□ -1.46
LIG1-209ENST00000596104 LCE2AQ5TA79 106 aaPredicted RBP5.94□□□□□ -1.46
LIG1-209ENST00000596104 TMEM18Q96B42 140 aa5.94□□□□□ -1.46
LIG1-209ENST00000596104 OSTCQ9NRP0 149 aa5.94□□□□□ -1.46
LIG1-209ENST00000596104 GAGE2DQ9UEU5 116 aa5.94□□□□□ -1.46
LIG1-209ENST00000596104 PPP1R2P9O14990 202 aa5.93□□□□□ -1.46
LIG1-209ENST00000596104 CEBPGP53567 150 aa5.93□□□□□ -1.46
LIG1-209ENST00000596104 RPL32P62910 135 aaKnown RBP5.93□□□□□ -1.46
LIG1-209ENST00000596104 RIGQ13278 110 aa5.93□□□□□ -1.46
LIG1-209ENST00000596104 KIAA0087Q14695 138 aa5.93□□□□□ -1.46
LIG1-209ENST00000596104 MRPL51Q4U2R6 128 aaKnown RBP5.93□□□□□ -1.46
LIG1-209ENST00000596104 SMIM7Q9BQ49 75 aa5.93□□□□□ -1.46
LIG1-209ENST00000596104 CARHSP1Q9Y2V2 147 aaKnown RBP5.93□□□□□ -1.46
LIG1-209ENST00000596104 V9GYV3 84 aa5.93□□□□□ -1.46
LIG1-209ENST00000596104 TRBV24-1A0A075B6N3 115 aa5.92□□□□□ -1.46
LIG1-209ENST00000596104 UBE2BP63146 152 aa5.92□□□□□ -1.46
LIG1-209ENST00000596104 MRPS36P82909 103 aaKnown RBP5.92□□□□□ -1.46
LIG1-209ENST00000596104 FAM104BQ5XKR9 115 aa5.92□□□□□ -1.46
LIG1-209ENST00000596104 TCTE3Q8IZS6 198 aa5.92□□□□□ -1.46
LIG1-209ENST00000596104 C20orf78Q9BR46 151 aa5.92□□□□□ -1.46
LIG1-209ENST00000596104 SPANXA1Q9NS26 97 aa5.92□□□□□ -1.46
LIG1-209ENST00000596104 IFITM10A6NMD0 228 aa5.91□□□□□ -1.46
LIG1-209ENST00000596104 BLOC1S1P78537 153 aa5.91□□□□□ -1.46
LIG1-209ENST00000596104 C9orf129Q5T035 196 aaKnown RBP5.91□□□□□ -1.46
LIG1-209ENST00000596104 LINC00862A6NCI5 91 aa5.9□□□□□ -1.46
LIG1-209ENST00000596104 NDUFC2-KCTD14E9PQ53 114 aa5.9□□□□□ -1.46
LIG1-209ENST00000596104 TCAPO15273 167 aa5.9□□□□□ -1.46
LIG1-209ENST00000596104 ZNF861PO60384 105 aa5.9□□□□□ -1.46
LIG1-209ENST00000596104 HBBP68871 147 aa5.9□□□□□ -1.46
LIG1-209ENST00000596104 SMIM2Q9BVW6 85 aa5.9□□□□□ -1.46
LIG1-209ENST00000596104 TRBV30A0A0K0K1B3 111 aa5.89□□□□□ -1.47
LIG1-209ENST00000596104 ZNF727A8MUV8 499 aa5.89□□□□□ -1.47
LIG1-209ENST00000596104 TNFRSF6BO95407 300 aa5.89□□□□□ -1.47
LIG1-209ENST00000596104 LINC00242Q5T6M2 205 aa5.89□□□□□ -1.47
LIG1-209ENST00000596104 C2orf82Q6UX34 121 aa5.89□□□□□ -1.47
LIG1-209ENST00000596104 ALKAL2Q6UX46 152 aa5.89□□□□□ -1.47
LIG1-209ENST00000596104 NAT8BQ9UHF3 227 aa5.89□□□□□ -1.47
LIG1-209ENST00000596104 TGIF2-C20orf24A0A0A6YYL0 155 aa5.88□□□□□ -1.47
LIG1-209ENST00000596104 KRTAP9-6A0A140TA67 174 aa5.88□□□□□ -1.47
LIG1-209ENST00000596104 TSPAN13O95857 204 aa5.88□□□□□ -1.47
LIG1-209ENST00000596104 SRP19P09132 144 aaKnown RBP5.88□□□□□ -1.47
LIG1-209ENST00000596104 CKS2P33552 79 aa5.88□□□□□ -1.47
LIG1-209ENST00000596104 A0A087X002 238 aa5.87□□□□□ -1.47
LIG1-209ENST00000596104 SMIM27A0A1W2PRY6 76 aa5.87□□□□□ -1.47
LIG1-209ENST00000596104 NPYP01303 97 aa5.87□□□□□ -1.47
LIG1-209ENST00000596104 FAM74A3Q4VXF1 159 aa5.87□□□□□ -1.47
LIG1-209ENST00000596104 EIF5A2Q9GZV4 153 aaKnown RBP5.87□□□□□ -1.47
LIG1-209ENST00000596104 IGLV4-3A0A075B6K6 122 aa5.86□□□□□ -1.47
LIG1-209ENST00000596104 A0A1B0GW15 77 aa5.86□□□□□ -1.47
LIG1-209ENST00000596104 D6R8Y8 96 aa5.86□□□□□ -1.47
LIG1-209ENST00000596104 NUPR1O60356 82 aa5.86□□□□□ -1.47
LIG1-209ENST00000596104 RPL23P62829 140 aaKnown RBP5.86□□□□□ -1.47
LIG1-209ENST00000596104 LINC01561Q8N1V8 128 aa5.86□□□□□ -1.47
LIG1-209ENST00000596104 PACRGQ96M98 296 aaPredicted RBP5.86□□□□□ -1.47
LIG1-209ENST00000596104 PYGO1Q9Y3Y4 419 aa5.86□□□□□ -1.47
LIG1-209ENST00000596104 C22orf24Q9Y442 160 aa5.86□□□□□ -1.47
LIG1-209ENST00000596104 FAT4Q6V0I7 4981 aa5.85□□□□□ -1.47
LIG1-209ENST00000596104 IFI27P40305 119 aaPredicted RBP5.85□□□□□ -1.47
LIG1-209ENST00000596104 CTDSP1Q9GZU7 261 aa5.85□□□□□ -1.47
LIG1-209ENST00000596104 A0A1B0GXF2 115 aa5.84□□□□□ -1.47
LIG1-209ENST00000596104 LINC00469Q8N7U9 141 aa5.84□□□□□ -1.47
LIG1-209ENST00000596104 PPBPP02775 128 aa5.83□□□□□ -1.48
LIG1-209ENST00000596104 CRYGAP11844 174 aa5.83□□□□□ -1.48
LIG1-209ENST00000596104 ADIRFQ15847 76 aa5.83□□□□□ -1.48
LIG1-209ENST00000596104 LBHQ53QV2 105 aaPredicted RBP5.83□□□□□ -1.48
LIG1-209ENST00000596104 MRPL54Q6P161 138 aaKnown RBP5.83□□□□□ -1.48
LIG1-209ENST00000596104 LINC00173Q6ZV60 143 aa5.83□□□□□ -1.48
LIG1-209ENST00000596104 TYMSOSQ8TAI1 123 aa5.83□□□□□ -1.48
LIG1-209ENST00000596104 TMEM141Q96I45 108 aa5.83□□□□□ -1.48
LIG1-209ENST00000596104 XAGE1AQ9HD64 81 aa5.83□□□□□ -1.48
LIG1-209ENST00000596104 C9JQL5 133 aa5.82□□□□□ -1.48
LIG1-209ENST00000596104 F8W036 122 aa5.82□□□□□ -1.48
LIG1-209ENST00000596104 BCE1O60756 84 aa5.82□□□□□ -1.48
LIG1-209ENST00000596104 RAB5AP20339 215 aa5.82□□□□□ -1.48
LIG1-209ENST00000596104 RPL28P46779 137 aaKnown RBP5.82□□□□□ -1.48
LIG1-209ENST00000596104 ZC2HC1BQ5TFG8 222 aa5.82□□□□□ -1.48
LIG1-209ENST00000596104 TEX43Q6ZNM6 134 aa5.82□□□□□ -1.48
LIG1-209ENST00000596104 TP73-AS1Q9UF72 201 aa5.82□□□□□ -1.48
LIG1-209ENST00000596104 S100A8P05109 93 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 PRSS2P07478 247 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 KRTAP13-2Q52LG2 175 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 Q6ZN92 141 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 MRPL55Q7Z7F7 128 aaKnown RBP5.81□□□□□ -1.48
LIG1-209ENST00000596104 Q8IZM0 81 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 ORMDL3Q8N138 153 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 AMELXQ99217 191 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 ANAPC11Q9NYG5 84 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 TOMM7Q9P0U1 55 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 NAT8Q9UHE5 227 aa5.81□□□□□ -1.48
LIG1-209ENST00000596104 PRSS47A8MTI9 375 aa5.8□□□□□ -1.48
LIG1-209ENST00000596104 CKS1BP61024 79 aa5.8□□□□□ -1.48
LIG1-209ENST00000596104 C6orf226Q5I0X4 101 aa5.8□□□□□ -1.48
LIG1-209ENST00000596104 TMEM136Q6ZRR5 245 aa5.8□□□□□ -1.48
LIG1-209ENST00000596104 PRELID3AQ96N28 172 aa5.8□□□□□ -1.48
LIG1-209ENST00000596104 RETNLBQ9BQ08 111 aa5.8□□□□□ -1.48
LIG1-209ENST00000596104 C2orf88Q9BSF0 95 aa5.8□□□□□ -1.48
LIG1-209ENST00000596104 TPRXLQ17RH7 258 aa5.79□□□□□ -1.48
LIG1-209ENST00000596104 C2orf66Q6UXQ4 117 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms