RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	LCE2C	Q5TA81	110 aa		2.6	□□□□□ -1.99
VMP1-216	ENST00000592790	LINC00526	Q96FQ7	95 aa		2.6	□□□□□ -1.99
VMP1-216	ENST00000592790	RPL28	P46779	137 aa	Known RBP	2.6	□□□□□ -1.99
VMP1-216	ENST00000592790	MAP6D1	Q9H9H5	199 aa		2.6	□□□□□ -1.99
VMP1-216	ENST00000592790	ATM	Q13315	3056 aa		2.6	□□□□□ -1.99
VMP1-216	ENST00000592790	COL27A1	Q8IZC6	1860 aa	Predicted RBP	2.6	□□□□□ -1.99
VMP1-216	ENST00000592790	CCDC179	H3BU77	68 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	CRLF1	O75462	422 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	NHLRC4	P0CG21	123 aa	Predicted RBP	2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	PFN2	P35080	140 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	DEFB1	P60022	68 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	RPL18A	Q02543	176 aa	Known RBP	2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	MIR7-3HG	Q8N6C7	128 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	SERP2	Q8N6R1	65 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790		A0A0C4DFX4	3053 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	TRBV6-4	A0A1B0GX49	114 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	NDUFC2-KCTD14	E9PQ53	114 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	ATP5E	P56381	51 aa	Predicted RBP	2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	BEAN1	Q3B7T3	259 aa		2.59	□□□□□ -1.99
VMP1-216	ENST00000592790	IGHV4-30-2	A0A087WSY4	118 aa		2.59	□□□□□ -2
VMP1-216	ENST00000592790	IGLV5-45	A0A087WSX0	123 aa		2.59	□□□□□ -2
VMP1-216	ENST00000592790	LECT2	O14960	151 aa		2.59	□□□□□ -2
VMP1-216	ENST00000592790	CFHR3	Q02985	330 aa		2.59	□□□□□ -2
VMP1-216	ENST00000592790		Q6YL49	198 aa		2.59	□□□□□ -2
VMP1-216	ENST00000592790	CHCHD7	Q9BUK0	85 aa		2.59	□□□□□ -2
VMP1-216	ENST00000592790	AGRN	O00468	2067 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	DNAH1	Q9P2D7	4330 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	SLURP1	P55000	103 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	LINC01561	Q8N1V8	128 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	NOP10	Q9NPE3	64 aa	Known RBP	2.58	□□□□□ -2
VMP1-216	ENST00000592790	IGLV5-39	A0A0G2JS06	123 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	NDUFC1	O43677	76 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	COX17	Q14061	63 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	CEMP1	Q6PRD7	247 aa	Predicted RBP	2.58	□□□□□ -2
VMP1-216	ENST00000592790	RBM3	P98179	157 aa	Known RBP	2.58	□□□□□ -2
VMP1-216	ENST00000592790	DEFB114	Q30KQ6	69 aa		2.58	□□□□□ -2
VMP1-216	ENST00000592790	SMIM1	B2RUZ4	78 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	CCL24	O00175	119 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	BCE1	O60756	84 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	LINC00242	Q5T6M2	205 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790		Q6ZQT7	251 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	CDC42SE2	Q9NRR3	84 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	SETX	Q7Z333	2677 aa	Known RBP	2.57	□□□□□ -2
VMP1-216	ENST00000592790	RPL35A	P18077	110 aa	Known RBP	2.57	□□□□□ -2
VMP1-216	ENST00000592790	APOC4	P55056	127 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	IGKV3D-7	A0A0C4DH55	119 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790		A8MZ25	164 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	SDIM1	Q6ZPB5	146 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	FAM19A3	Q7Z5A8	133 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	C14orf132	Q9NPU4	83 aa		2.57	□□□□□ -2
VMP1-216	ENST00000592790	DCHS2	Q6V1P9	2916 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	TRBV10-3	A0A0K0K1G6	114 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	HAMP	P81172	84 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	ADAMTSL4-AS1	Q5T5F5	129 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	TRBV6-8	A0A0A6YYG3	113 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	USP17L23	D6RBM5	183 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	CCK	P06307	115 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	CRYGA	P11844	174 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	C5orf38	Q86SI9	138 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790		Q8IZM0	81 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	FLNB	O75369	2602 aa	Known RBP	2.56	□□□□□ -2
VMP1-216	ENST00000592790	DEFB130B	P0DP73	79 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	DEFB130A	P0DP74	79 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	XCL1	P47992	114 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	DAD1	P61803	113 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	ZNF702P	Q9H963	129 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790		Q9HAA7	133 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	PRO0255	Q9UI72	69 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	KLK5	Q9Y337	293 aa	Predicted RBP	2.56	□□□□□ -2
VMP1-216	ENST00000592790		X6R8D5	127 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	CELSR1	Q9NYQ6	3014 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790	C3orf56	Q8N813	242 aa		2.56	□□□□□ -2
VMP1-216	ENST00000592790		A0A087WZ39	114 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	FAM236D	A0A1B0GTK5	79 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	ANG	P03950	147 aa	Known RBP	2.55	□□□□□ -2
VMP1-216	ENST00000592790	FAM236C	P0DP71	79 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	GYPE	P15421	78 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	DEFB136	Q30KP8	78 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	SMIM11B	Q8TCY0	68 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	LITAF	Q99732	161 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	UPK3B	Q9BT76	320 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	LYRM9	A8MSI8	78 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790		A8MTW9	85 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	EPM2A	B3EWF7	344 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	DEFB113	Q30KQ7	82 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790		Q6ZTI0	123 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	DIRC1	Q969H9	104 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	PROK1	P58294	105 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	DNAH7	Q8WXX0	4024 aa		2.55	□□□□□ -2
VMP1-216	ENST00000592790	CCL18	P55774	89 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	2.54	□□□□□ -2
VMP1-216	ENST00000592790	NACA	E9PAV3	2078 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790	TRAV7	A0A075B6U4	112 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790	LINC00694	P0DN24	101 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790	ZNF575	Q86XF7	245 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790	C1orf158	Q8N1D5	194 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790		F5H768	121 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790		F8WEM9	126 aa		2.54	□□□□□ -2
VMP1-216	ENST00000592790	FUS	P35637	526 aa	Known RBP eCLIP	2.54	□□□□□ -2
VMP1-216	ENST00000592790	CD164L2	Q6UWJ8	174 aa		2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms