RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, human

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-219	ENST00000589349	MRPL51	Q4U2R6	128 aa	Known RBP	5.27	□□□□□ -1.57
DNMT1-219	ENST00000589349	ZNF664	Q8N3J9	261 aa		5.27	□□□□□ -1.57
DNMT1-219	ENST00000589349	LINC00526	Q96FQ7	95 aa		5.27	□□□□□ -1.57
DNMT1-219	ENST00000589349		A0A1B0GW15	77 aa		5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	SMIM27	A0A1W2PRY6	76 aa		5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	RAB5A	P20339	215 aa		5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	KRTAP10-6	P60371	365 aa	Predicted RBP	5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	CNBP	P62633	177 aa	Known RBP	5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	HBB	P68871	147 aa		5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	FAM104B	Q5XKR9	115 aa		5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	SDIM1	Q6ZPB5	146 aa		5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	SMDT1	Q9H4I9	107 aa		5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	FLG2	Q5D862	2391 aa	Predicted RBP	5.26	□□□□□ -1.57
DNMT1-219	ENST00000589349	IGLV5-45	A0A087WSX0	123 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	IGHV1-58	A0A0C4DH39	117 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	TRBV27	A0A0K0K1C4	114 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	LOC389332	A0A1B0GUA5	103 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349		D6R8Y8	96 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	ESD	P10768	282 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	POLR2K	P53803	58 aa	Known RBP	5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	C15orf56	Q8N910	161 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	C7orf33	Q8WU49	177 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	CDC42SE2	Q9NRR3	84 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	ABCA13	Q86UQ4	5058 aa		5.25	□□□□□ -1.57
DNMT1-219	ENST00000589349	APOB	P04114	4563 aa	Known RBP	5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	LINC00862	A6NCI5	91 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	C1orf196	B1AJZ1	125 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	PANO1	I0J062	215 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	COX7A2L	O14548	114 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	TCAP	O15273	167 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	MT-ND4L	P03901	98 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	RPL24	P83731	157 aa	Known RBP	5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	CD164L2	Q6UWJ8	174 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	C5orf38	Q86SI9	138 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	STPG4	Q8N801	248 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	CARD19	Q96LW7	228 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	C20orf78	Q9BR46	151 aa		5.24	□□□□□ -1.57
DNMT1-219	ENST00000589349	APOM	O95445	188 aa		5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	SYCN	Q0VAF6	134 aa		5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	GAGE2B	Q13066	116 aa		5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	UBE2V1	Q13404	147 aa		5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	TMEM136	Q6ZRR5	245 aa		5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	MRPL52	Q86TS9	123 aa	Known RBP	5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	ORMDL3	Q8N138	153 aa		5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	PKIG	Q9Y2B9	76 aa		5.23	□□□□□ -1.57
DNMT1-219	ENST00000589349	GVQW2	A0A096LPI5	108 aa	Predicted RBP	5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	NPY	P01303	97 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	PPBP	P02775	128 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	RPL39	P62891	51 aa	Known RBP	5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349		Q6ZUT4	128 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349		Q75L30	129 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	PRELID3A	Q96N28	172 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	CAMK2N2	Q96S95	79 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	SMIM2	Q9BVW6	85 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	UBE2D4	Q9Y2X8	147 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	HERC1	Q15751	4861 aa		5.22	□□□□□ -1.57
DNMT1-219	ENST00000589349	IGLV4-69	A0A075B6H9	119 aa		5.21	□□□□□ -1.58
DNMT1-219	ENST00000589349	PHOX2A	O14813	284 aa		5.21	□□□□□ -1.58
DNMT1-219	ENST00000589349	RPL18A	Q02543	176 aa	Known RBP	5.21	□□□□□ -1.58
DNMT1-219	ENST00000589349	SPACA4	Q8TDM5	124 aa		5.21	□□□□□ -1.58
DNMT1-219	ENST00000589349	OPRPN	Q99935	248 aa	Predicted RBP	5.21	□□□□□ -1.58
DNMT1-219	ENST00000589349	MAP1LC3A	Q9H492	121 aa		5.21	□□□□□ -1.58
DNMT1-219	ENST00000589349	LINC00474	Q9P2X8	69 aa		5.21	□□□□□ -1.58
DNMT1-219	ENST00000589349	TRBV24-1	A0A075B6N3	115 aa		5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349		A0A096LNI7	61 aa		5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349	IFI27	P40305	119 aa	Predicted RBP	5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349	SPAG11B	Q08648	103 aa		5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349	PNRC1	Q12796	327 aa	Predicted RBP	5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349	ATP5L2	Q7Z4Y8	100 aa		5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349	ORAOV1	Q8WV07	137 aa		5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349	SPANXA1	Q9NS26	97 aa		5.2	□□□□□ -1.58
DNMT1-219	ENST00000589349	DMBT1	Q9UGM3	2413 aa	Predicted RBP	5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349	TGIF2-C20orf24	A0A0A6YYL0	155 aa		5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349	LOC107984640	A0A0U1RRK4	108 aa		5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349		A0A1B0GXF2	115 aa		5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349	LINC01547	P58512	204 aa	Predicted RBP	5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349		Q6ZN92	141 aa		5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349	TIMM21	Q9BVV7	248 aa		5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349	CSDC2	Q9Y534	153 aa	Known RBP	5.19	□□□□□ -1.58
DNMT1-219	ENST00000589349		A0A0J9YXV3	536 aa		5.18	□□□□□ -1.58
DNMT1-219	ENST00000589349	OXT	P01178	125 aa		5.18	□□□□□ -1.58
DNMT1-219	ENST00000589349		Q6ZRU5	148 aa		5.18	□□□□□ -1.58
DNMT1-219	ENST00000589349	C2orf88	Q9BSF0	95 aa		5.18	□□□□□ -1.58
DNMT1-219	ENST00000589349	PLAC8	Q9NZF1	115 aa		5.18	□□□□□ -1.58
DNMT1-219	ENST00000589349	SRRM2	Q9UQ35	2752 aa	Known RBP	5.18	□□□□□ -1.58
DNMT1-219	ENST00000589349	CFC1B	P0CG36	223 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	CFC1	P0CG37	223 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	S100P	P25815	95 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	HNRNPA3	P51991	378 aa	Known RBP	5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	RPL32	P62910	135 aa	Known RBP	5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	CIRBP	Q14011	172 aa	Known RBP	5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	KIAA1644	Q3SXP7	199 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	TEX43	Q6ZNM6	134 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	TMEM141	Q96I45	108 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	VCX2	Q9H322	139 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	CYSLTR1	Q9Y271	337 aa		5.17	□□□□□ -1.58
DNMT1-219	ENST00000589349	NDUFA1	O15239	70 aa		5.16	□□□□□ -1.58
DNMT1-219	ENST00000589349	KRTAP10-7	P60409	375 aa	Predicted RBP	5.16	□□□□□ -1.58
DNMT1-219	ENST00000589349	GAGE2E	Q4V326	116 aa		5.16	□□□□□ -1.58
DNMT1-219	ENST00000589349	CLLU1	Q5K131	121 aa		5.16	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms