RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 IMMP2LQ96T52 175 aa9.23□□□□□ -0.93
CLN3-236ENST00000568558 KIR2DL4Q99706 377 aa9.23□□□□□ -0.93
CLN3-236ENST00000568558 CTDSP1Q9GZU7 261 aa9.23□□□□□ -0.93
CLN3-236ENST00000568558 CARHSP1Q9Y2V2 147 aaKnown RBP9.23□□□□□ -0.93
CLN3-236ENST00000568558 C1orf196B1AJZ1 125 aa9.22□□□□□ -0.93
CLN3-236ENST00000568558 PPBPP02775 128 aa9.22□□□□□ -0.93
CLN3-236ENST00000568558 PRELID3AQ96N28 172 aa9.22□□□□□ -0.93
CLN3-236ENST00000568558 CSDC2Q9Y534 153 aaKnown RBP9.22□□□□□ -0.93
CLN3-236ENST00000568558 COX7A2LO14548 114 aa9.21□□□□□ -0.94
CLN3-236ENST00000568558 TCAPO15273 167 aa9.21□□□□□ -0.94
CLN3-236ENST00000568558 MALP21145 153 aa9.21□□□□□ -0.94
CLN3-236ENST00000568558 UBE2D4Q9Y2X8 147 aa9.21□□□□□ -0.94
CLN3-236ENST00000568558 A0A1W2PNN7 141 aa9.2□□□□□ -0.94
CLN3-236ENST00000568558 RPL39P62891 51 aaKnown RBP9.2□□□□□ -0.94
CLN3-236ENST00000568558 RNASE13Q5GAN3 156 aaKnown RBP9.2□□□□□ -0.94
CLN3-236ENST00000568558 CAMK2N2Q96S95 79 aa9.2□□□□□ -0.94
CLN3-236ENST00000568558 APOMO95445 188 aa9.19□□□□□ -0.94
CLN3-236ENST00000568558 SMAGPQ0VAQ4 97 aa9.19□□□□□ -0.94
CLN3-236ENST00000568558 C2orf48Q96LS8 159 aa9.19□□□□□ -0.94
CLN3-236ENST00000568558 TRAV13-1A0A0B4J241 112 aa9.18□□□□□ -0.94
CLN3-236ENST00000568558 LOC389332A0A1B0GUA5 103 aa9.18□□□□□ -0.94
CLN3-236ENST00000568558 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.18□□□□□ -0.94
CLN3-236ENST00000568558 Q6ZUT4 128 aa9.18□□□□□ -0.94
CLN3-236ENST00000568558 FAM104AQ969W3 186 aa9.18□□□□□ -0.94
CLN3-236ENST00000568558 RPS10P5Q9NQ39 176 aa9.18□□□□□ -0.94
CLN3-236ENST00000568558 LPAP08519 4548 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 TRAV9-1A0A075B6T8 112 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 PRSS47A8MTI9 375 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 RHEBQ15382 184 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 KIAA1644Q3SXP7 199 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 C9orf116Q5BN46 136 aaPredicted RBP9.17□□□□□ -0.94
CLN3-236ENST00000568558 C5orf38Q86SI9 138 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 TIMM21Q9BVV7 248 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 PSORS1C2Q9UIG4 136 aa9.17□□□□□ -0.94
CLN3-236ENST00000568558 RPL18AQ02543 176 aaKnown RBP9.16□□□□□ -0.94
CLN3-236ENST00000568558 OPRPNQ99935 248 aaPredicted RBP9.16□□□□□ -0.94
CLN3-236ENST00000568558 MAP1LC3AQ9H492 121 aa9.16□□□□□ -0.94
CLN3-236ENST00000568558 LAMTOR2Q9Y2Q5 125 aa9.16□□□□□ -0.94
CLN3-236ENST00000568558 APOC3P02656 99 aa9.15□□□□□ -0.94
CLN3-236ENST00000568558 S100PP25815 95 aa9.15□□□□□ -0.94
CLN3-236ENST00000568558 SPAG11BQ08648 103 aa9.15□□□□□ -0.94
CLN3-236ENST00000568558 RNF151Q2KHN1 245 aa9.15□□□□□ -0.94
CLN3-236ENST00000568558 TMEM18Q96B42 140 aa9.15□□□□□ -0.94
CLN3-236ENST00000568558 MT-ND6P03923 174 aa9.14□□□□□ -0.95
CLN3-236ENST00000568558 PHF5AQ7RTV0 110 aaKnown RBP9.14□□□□□ -0.95
CLN3-236ENST00000568558 Q8N8P6 123 aa9.14□□□□□ -0.95
CLN3-236ENST00000568558 OR10D4PQ8NGN7 298 aa9.14□□□□□ -0.95
CLN3-236ENST00000568558 RAB5AP20339 215 aa9.13□□□□□ -0.95
CLN3-236ENST00000568558 TGIF2-C20orf24A0A0A6YYL0 155 aa9.12□□□□□ -0.95
CLN3-236ENST00000568558 IFI27P40305 119 aaPredicted RBP9.12□□□□□ -0.95
CLN3-236ENST00000568558 C1orf137Q5JT78 98 aa9.12□□□□□ -0.95
CLN3-236ENST00000568558 GNB1LQ9BYB4 327 aa9.12□□□□□ -0.95
CLN3-236ENST00000568558 SPANXA1Q9NS26 97 aa9.12□□□□□ -0.95
CLN3-236ENST00000568558 MRPL35Q9NZE8 188 aaKnown RBP9.12□□□□□ -0.95
CLN3-236ENST00000568558 ORAOV1Q8WV07 137 aa9.11□□□□□ -0.95
CLN3-236ENST00000568558 IGHV3OR16-9A0A0B4J2B5 98 aa9.1□□□□□ -0.95
CLN3-236ENST00000568558 F8WDY8 70 aa9.1□□□□□ -0.95
CLN3-236ENST00000568558 MRPS36P82909 103 aaKnown RBP9.1□□□□□ -0.95
CLN3-236ENST00000568558 SVBPQ8N300 66 aa9.1□□□□□ -0.95
CLN3-236ENST00000568558 IGLV4-3A0A075B6K6 122 aa9.09□□□□□ -0.95
CLN3-236ENST00000568558 SNAPINO95295 136 aa9.09□□□□□ -0.95
CLN3-236ENST00000568558 NDUFA5Q16718 116 aa9.09□□□□□ -0.95
CLN3-236ENST00000568558 SLC7A5P1Q8MH63 180 aa9.09□□□□□ -0.95
CLN3-236ENST00000568558 ALKBH7Q9BT30 221 aaPredicted RBP9.09□□□□□ -0.95
CLN3-236ENST00000568558 MRPL18Q9H0U6 180 aaKnown RBP9.09□□□□□ -0.95
CLN3-236ENST00000568558 NDUFA1O15239 70 aa9.08□□□□□ -0.96
CLN3-236ENST00000568558 IGLV7-43P04211 117 aa9.08□□□□□ -0.96
CLN3-236ENST00000568558 TLX1NBP0CAT3 122 aa9.08□□□□□ -0.96
CLN3-236ENST00000568558 C10orf25Q5T742 122 aa9.08□□□□□ -0.96
CLN3-236ENST00000568558 ZC2HC1BQ5TFG8 222 aa9.08□□□□□ -0.96
CLN3-236ENST00000568558 C2orf66Q6UXQ4 117 aa9.08□□□□□ -0.96
CLN3-236ENST00000568558 NXT2Q9NPJ8 142 aaKnown RBP9.08□□□□□ -0.96
CLN3-236ENST00000568558 PYGO1Q9Y3Y4 419 aa9.08□□□□□ -0.96
CLN3-236ENST00000568558 FAM168BA1KXE4 195 aa9.07□□□□□ -0.96
CLN3-236ENST00000568558 IFITM10A6NMD0 228 aa9.07□□□□□ -0.96
CLN3-236ENST00000568558 FABP9Q0Z7S8 132 aa9.07□□□□□ -0.96
CLN3-236ENST00000568558 KRTAP11-1Q8IUC1 163 aa9.07□□□□□ -0.96
CLN3-236ENST00000568558 DIRC1Q969H9 104 aa9.07□□□□□ -0.96
CLN3-236ENST00000568558 CYSLTR1Q9Y271 337 aa9.07□□□□□ -0.96
CLN3-236ENST00000568558 COX19Q49B96 90 aa9.06□□□□□ -0.96
CLN3-236ENST00000568558 ORMDL2Q53FV1 153 aa9.06□□□□□ -0.96
CLN3-236ENST00000568558 UNQ6190/PRO20217Q6UXQ8 127 aa9.06□□□□□ -0.96
CLN3-236ENST00000568558 PRR26Q8N8Z3 221 aa9.06□□□□□ -0.96
CLN3-236ENST00000568558 YPEL4Q96NS1 127 aa9.06□□□□□ -0.96
CLN3-236ENST00000568558 C6orf48Q9UBA6 75 aa9.06□□□□□ -0.96
CLN3-236ENST00000568558 A0A087WZ39 114 aa9.05□□□□□ -0.96
CLN3-236ENST00000568558 IGIPA6NJ69 53 aa9.05□□□□□ -0.96
CLN3-236ENST00000568558 K7EMI3 77 aa9.05□□□□□ -0.96
CLN3-236ENST00000568558 LINC00173Q6ZV60 143 aa9.05□□□□□ -0.96
CLN3-236ENST00000568558 FAM19A5Q7Z5A7 132 aaPredicted RBP9.05□□□□□ -0.96
CLN3-236ENST00000568558 TMEM141Q96I45 108 aa9.05□□□□□ -0.96
CLN3-236ENST00000568558 H0Y9J4 135 aa9.04□□□□□ -0.96
CLN3-236ENST00000568558 LINC01546A6NGU7 62 aa9.03□□□□□ -0.96
CLN3-236ENST00000568558 KIAA0087Q14695 138 aa9.03□□□□□ -0.96
CLN3-236ENST00000568558 GAGE2EQ4V326 116 aa9.03□□□□□ -0.96
CLN3-236ENST00000568558 KRTAP7-1Q8IUC3 87 aa9.03□□□□□ -0.96
CLN3-236ENST00000568558 GAGE2DQ9UEU5 116 aa9.03□□□□□ -0.96
CLN3-236ENST00000568558 TRAPPC1Q9Y5R8 145 aa9.03□□□□□ -0.96
CLN3-236ENST00000568558 UBE2D1P51668 147 aa9.02□□□□□ -0.97
CLN3-236ENST00000568558 LINC00242Q5T6M2 205 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms