RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 C6orf48Q9UBA6 75 aa10.55□□□□□ -0.72
CLK3-221ENST00000568139 BLOC1S1P78537 153 aa10.54□□□□□ -0.72
CLK3-221ENST00000568139 SMIM7Q9BQ49 75 aa10.54□□□□□ -0.72
CLK3-221ENST00000568139 SMDT1Q9H4I9 107 aa10.54□□□□□ -0.72
CLK3-221ENST00000568139 RPL13AP40429 203 aaKnown RBP10.53□□□□□ -0.72
CLK3-221ENST00000568139 RPL39P62891 51 aaKnown RBP10.53□□□□□ -0.72
CLK3-221ENST00000568139 RPL32P62910 135 aaKnown RBP10.53□□□□□ -0.72
CLK3-221ENST00000568139 MRPL51Q4U2R6 128 aaKnown RBP10.53□□□□□ -0.72
CLK3-221ENST00000568139 GAGE2EQ4V326 116 aa10.53□□□□□ -0.72
CLK3-221ENST00000568139 C20orf78Q9BR46 151 aa10.53□□□□□ -0.72
CLK3-221ENST00000568139 GAGE2DQ9UEU5 116 aa10.53□□□□□ -0.72
CLK3-221ENST00000568139 V9GYV3 84 aa10.53□□□□□ -0.72
CLK3-221ENST00000568139 TRBV24-1A0A075B6N3 115 aa10.52□□□□□ -0.73
CLK3-221ENST00000568139 UBE2D1P51668 147 aa10.52□□□□□ -0.73
CLK3-221ENST00000568139 FAM104BQ5XKR9 115 aa10.52□□□□□ -0.73
CLK3-221ENST00000568139 KRTAP9-2Q9BYQ4 174 aa10.52□□□□□ -0.73
CLK3-221ENST00000568139 A0A0U1RQV1 116 aa10.51□□□□□ -0.73
CLK3-221ENST00000568139 LINC00862A6NCI5 91 aa10.51□□□□□ -0.73
CLK3-221ENST00000568139 M0QXV9 152 aa10.51□□□□□ -0.73
CLK3-221ENST00000568139 TCAPO15273 167 aa10.51□□□□□ -0.73
CLK3-221ENST00000568139 MRPS36P82909 103 aaKnown RBP10.51□□□□□ -0.73
CLK3-221ENST00000568139 SPANXA1Q9NS26 97 aa10.51□□□□□ -0.73
CLK3-221ENST00000568139 CARHSP1Q9Y2V2 147 aaKnown RBP10.51□□□□□ -0.73
CLK3-221ENST00000568139 ZNF727A8MUV8 499 aa10.5□□□□□ -0.73
CLK3-221ENST00000568139 UBE2BP63146 152 aa10.5□□□□□ -0.73
CLK3-221ENST00000568139 KIAA0087Q14695 138 aa10.5□□□□□ -0.73
CLK3-221ENST00000568139 ALKAL2Q6UX46 152 aa10.49□□□□□ -0.73
CLK3-221ENST00000568139 NAT8BQ9UHF3 227 aa10.49□□□□□ -0.73
CLK3-221ENST00000568139 HBBP68871 147 aa10.48□□□□□ -0.73
CLK3-221ENST00000568139 EIF5A2Q9GZV4 153 aaKnown RBP10.48□□□□□ -0.73
CLK3-221ENST00000568139 TRBV30A0A0K0K1B3 111 aa10.47□□□□□ -0.73
CLK3-221ENST00000568139 IFITM10A6NMD0 228 aa10.47□□□□□ -0.73
CLK3-221ENST00000568139 SMIM2Q9BVW6 85 aa10.47□□□□□ -0.73
CLK3-221ENST00000568139 TNFRSF6BO95407 300 aa10.46□□□□□ -0.73
CLK3-221ENST00000568139 SRP19P09132 144 aaKnown RBP10.46□□□□□ -0.73
CLK3-221ENST00000568139 CKS2P33552 79 aa10.46□□□□□ -0.73
CLK3-221ENST00000568139 FAM74A3Q4VXF1 159 aa10.46□□□□□ -0.73
CLK3-221ENST00000568139 C9orf129Q5T035 196 aaKnown RBP10.46□□□□□ -0.73
CLK3-221ENST00000568139 TGIF2-C20orf24A0A0A6YYL0 155 aa10.45□□□□□ -0.74
CLK3-221ENST00000568139 NDUFC2-KCTD14E9PQ53 114 aa10.45□□□□□ -0.74
CLK3-221ENST00000568139 ZNF861PO60384 105 aa10.45□□□□□ -0.74
CLK3-221ENST00000568139 A0A1B0GW15 77 aa10.43□□□□□ -0.74
CLK3-221ENST00000568139 SMIM27A0A1W2PRY6 76 aa10.43□□□□□ -0.74
CLK3-221ENST00000568139 LINC00242Q5T6M2 205 aa10.43□□□□□ -0.74
CLK3-221ENST00000568139 C2orf82Q6UX34 121 aa10.43□□□□□ -0.74
CLK3-221ENST00000568139 RPL23P62829 140 aaKnown RBP10.42□□□□□ -0.74
CLK3-221ENST00000568139 LCE2AQ5TA79 106 aaPredicted RBP10.42□□□□□ -0.74
CLK3-221ENST00000568139 PACRGQ96M98 296 aaPredicted RBP10.42□□□□□ -0.74
CLK3-221ENST00000568139 D6R8Y8 96 aa10.41□□□□□ -0.74
CLK3-221ENST00000568139 NPYP01303 97 aa10.41□□□□□ -0.74
CLK3-221ENST00000568139 PYGO1Q9Y3Y4 419 aa10.41□□□□□ -0.74
CLK3-221ENST00000568139 NUPR1O60356 82 aa10.4□□□□□ -0.74
CLK3-221ENST00000568139 TSPAN13O95857 204 aa10.4□□□□□ -0.74
CLK3-221ENST00000568139 IFI27P40305 119 aaPredicted RBP10.4□□□□□ -0.74
CLK3-221ENST00000568139 LINC01561Q8N1V8 128 aa10.4□□□□□ -0.74
CLK3-221ENST00000568139 IGLV4-3A0A075B6K6 122 aa10.39□□□□□ -0.75
CLK3-221ENST00000568139 TMEM141Q96I45 108 aa10.38□□□□□ -0.75
CLK3-221ENST00000568139 C22orf24Q9Y442 160 aa10.38□□□□□ -0.75
CLK3-221ENST00000568139 F8W036 122 aa10.37□□□□□ -0.75
CLK3-221ENST00000568139 PPBPP02775 128 aa10.37□□□□□ -0.75
CLK3-221ENST00000568139 ADIRFQ15847 76 aa10.37□□□□□ -0.75
CLK3-221ENST00000568139 A0A087X002 238 aa10.36□□□□□ -0.75
CLK3-221ENST00000568139 A0A1B0GXF2 115 aa10.36□□□□□ -0.75
CLK3-221ENST00000568139 S100A8P05109 93 aa10.36□□□□□ -0.75
CLK3-221ENST00000568139 RAB5AP20339 215 aa10.36□□□□□ -0.75
CLK3-221ENST00000568139 CTDSP1Q9GZU7 261 aa10.36□□□□□ -0.75
CLK3-221ENST00000568139 LBHQ53QV2 105 aaPredicted RBP10.35□□□□□ -0.75
CLK3-221ENST00000568139 MRPL54Q6P161 138 aaKnown RBP10.35□□□□□ -0.75
CLK3-221ENST00000568139 NAT8Q9UHE5 227 aa10.35□□□□□ -0.75
CLK3-221ENST00000568139 TEX43Q6ZNM6 134 aa10.34□□□□□ -0.75
CLK3-221ENST00000568139 LINC00469Q8N7U9 141 aa10.34□□□□□ -0.75
CLK3-221ENST00000568139 PRSS2P07478 247 aa10.33□□□□□ -0.76
CLK3-221ENST00000568139 Q6ZN92 141 aa10.33□□□□□ -0.76
CLK3-221ENST00000568139 ORMDL3Q8N138 153 aa10.33□□□□□ -0.76
CLK3-221ENST00000568139 TYMSOSQ8TAI1 123 aa10.33□□□□□ -0.76
CLK3-221ENST00000568139 TP73-AS1Q9UF72 201 aa10.33□□□□□ -0.76
CLK3-221ENST00000568139 PRSS47A8MTI9 375 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 C9JQL5 133 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 CRYGAP11844 174 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 RPL28P46779 137 aaKnown RBP10.32□□□□□ -0.76
CLK3-221ENST00000568139 CKS1BP61024 79 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 TMEM136Q6ZRR5 245 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 LINC00173Q6ZV60 143 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 PRELID3AQ96N28 172 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 XAGE1AQ9HD64 81 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 FAT4Q6V0I7 4981 aa10.32□□□□□ -0.76
CLK3-221ENST00000568139 BCE1O60756 84 aa10.31□□□□□ -0.76
CLK3-221ENST00000568139 C6orf226Q5I0X4 101 aa10.31□□□□□ -0.76
CLK3-221ENST00000568139 AKAP14Q86UN6 197 aa10.31□□□□□ -0.76
CLK3-221ENST00000568139 Q8IZM0 81 aa10.31□□□□□ -0.76
CLK3-221ENST00000568139 AMELXQ99217 191 aa10.31□□□□□ -0.76
CLK3-221ENST00000568139 C2orf88Q9BSF0 95 aa10.31□□□□□ -0.76
CLK3-221ENST00000568139 TOMM7Q9P0U1 55 aa10.31□□□□□ -0.76
CLK3-221ENST00000568139 ZC2HC1BQ5TFG8 222 aa10.3□□□□□ -0.76
CLK3-221ENST00000568139 FAM19A3Q7Z5A8 133 aa10.3□□□□□ -0.76
CLK3-221ENST00000568139 MRPL55Q7Z7F7 128 aaKnown RBP10.3□□□□□ -0.76
CLK3-221ENST00000568139 KRTAP9-6A0A140TA67 174 aa10.29□□□□□ -0.76
CLK3-221ENST00000568139 C2orf66Q6UXQ4 117 aa10.28□□□□□ -0.76
CLK3-221ENST00000568139 ALKBH7Q9BT30 221 aaPredicted RBP10.28□□□□□ -0.76
CLK3-221ENST00000568139 VCX2Q9H322 139 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms