RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PRSS2P07478 247 aa14.19□□□□□ -0.14
CLN3-230ENST00000568076 DEFB4AO15263 64 aa14.18□□□□□ -0.14
CLN3-230ENST00000568076 IGHV3-33P01772 117 aa14.18□□□□□ -0.14
CLN3-230ENST00000568076 GYPEP15421 78 aa14.18□□□□□ -0.14
CLN3-230ENST00000568076 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.18□□□□□ -0.14
CLN3-230ENST00000568076 CHCHD5Q9BSY4 110 aa14.18□□□□□ -0.14
CLN3-230ENST00000568076 TIMM17BO60830 172 aa14.17□□□□□ -0.14
CLN3-230ENST00000568076 APOC4P55056 127 aa14.17□□□□□ -0.14
CLN3-230ENST00000568076 Q9H8V8 135 aa14.17□□□□□ -0.14
CLN3-230ENST00000568076 LYRM9A8MSI8 78 aa14.16□□□□□ -0.14
CLN3-230ENST00000568076 NPC2P61916 151 aa14.16□□□□□ -0.14
CLN3-230ENST00000568076 PSMB2P49721 201 aa14.16□□□□□ -0.14
CLN3-230ENST00000568076 ATP6V0E2Q8NHE4 81 aa14.16□□□□□ -0.14
CLN3-230ENST00000568076 IGHV4-28A0A0C4DH34 117 aa14.15□□□□□ -0.14
CLN3-230ENST00000568076 DAND5Q8N907 189 aa14.15□□□□□ -0.14
CLN3-230ENST00000568076 PRO0255Q9UI72 69 aa14.15□□□□□ -0.14
CLN3-230ENST00000568076 CBY1Q9Y3M2 126 aa14.14□□□□□ -0.15
CLN3-230ENST00000568076 TEX48A0A1B0GUV7 120 aa14.14□□□□□ -0.15
CLN3-230ENST00000568076 G3V4G9 280 aa14.14□□□□□ -0.15
CLN3-230ENST00000568076 WIPF1O43516 503 aa14.14□□□□□ -0.15
CLN3-230ENST00000568076 TCL1BO95988 128 aa14.14□□□□□ -0.15
CLN3-230ENST00000568076 ZNF625Q96I27 306 aaPredicted RBP14.14□□□□□ -0.15
CLN3-230ENST00000568076 IGKV3OR2-268A0A0C4DH90 116 aa14.13□□□□□ -0.15
CLN3-230ENST00000568076 ERG28Q9UKR5 140 aa14.13□□□□□ -0.15
CLN3-230ENST00000568076 H7C2G1 150 aa14.13□□□□□ -0.15
CLN3-230ENST00000568076 LYRM7Q5U5X0 104 aa14.12□□□□□ -0.15
CLN3-230ENST00000568076 SH2D6Q7Z4S9 175 aa14.12□□□□□ -0.15
CLN3-230ENST00000568076 Q8NAQ8 132 aa14.11□□□□□ -0.15
CLN3-230ENST00000568076 A0A096LPF7 62 aa14.11□□□□□ -0.15
CLN3-230ENST00000568076 IGHV4-30-4P0DP06 118 aa14.11□□□□□ -0.15
CLN3-230ENST00000568076 SMCPP49901 116 aaPredicted RBP14.11□□□□□ -0.15
CLN3-230ENST00000568076 IFITM1P13164 125 aa14.1□□□□□ -0.15
CLN3-230ENST00000568076 ETDBQ3ZM63 59 aa14.1□□□□□ -0.15
CLN3-230ENST00000568076 VPS25Q9BRG1 176 aa14.1□□□□□ -0.15
CLN3-230ENST00000568076 CELA1Q9UNI1 258 aa14.1□□□□□ -0.15
CLN3-230ENST00000568076 F8P00451 2351 aa14.1□□□□□ -0.15
CLN3-230ENST00000568076 PAX4O43316 350 aa14.09□□□□□ -0.15
CLN3-230ENST00000568076 SCGB1C2P0DMR2 95 aa14.09□□□□□ -0.15
CLN3-230ENST00000568076 RNF183Q96D59 192 aa14.09□□□□□ -0.15
CLN3-230ENST00000568076 TRBV20-1A0A075B6N2 111 aa14.09□□□□□ -0.15
CLN3-230ENST00000568076 CIRBPQ14011 172 aaKnown RBP14.09□□□□□ -0.15
CLN3-230ENST00000568076 PRIMA1Q86XR5 153 aa14.09□□□□□ -0.15
CLN3-230ENST00000568076 IGHV3OR16-9A0A0B4J2B5 98 aa14.08□□□□□ -0.16
CLN3-230ENST00000568076 A0A0U1RRA0 63 aa14.08□□□□□ -0.16
CLN3-230ENST00000568076 MIFP14174 115 aa14.07□□□□□ -0.16
CLN3-230ENST00000568076 DAD1P61803 113 aa14.07□□□□□ -0.16
CLN3-230ENST00000568076 Q1RN00 199 aa14.07□□□□□ -0.16
CLN3-230ENST00000568076 LINC00308Q8TCZ7 52 aa14.07□□□□□ -0.16
CLN3-230ENST00000568076 LINC00959A0A1B0GUT2 108 aa14.05□□□□□ -0.16
CLN3-230ENST00000568076 TMEM262E9PQX1 116 aa14.05□□□□□ -0.16
CLN3-230ENST00000568076 HERV-K104P63124 156 aa14.05□□□□□ -0.16
CLN3-230ENST00000568076 SOSTDC1Q6X4U4 206 aa14.05□□□□□ -0.16
CLN3-230ENST00000568076 COX7B2Q8TF08 81 aa14.05□□□□□ -0.16
CLN3-230ENST00000568076 A0A1B0GUV1 79 aa14.04□□□□□ -0.16
CLN3-230ENST00000568076 TRIAP1O43715 76 aa14.04□□□□□ -0.16
CLN3-230ENST00000568076 MEIG1Q5JSS6 88 aa14.04□□□□□ -0.16
CLN3-230ENST00000568076 A0A087WZ39 114 aa14.03□□□□□ -0.16
CLN3-230ENST00000568076 TRBV30A0A0K0K1B3 111 aa14.03□□□□□ -0.16
CLN3-230ENST00000568076 KRTAP24-1Q3LI83 254 aa14.03□□□□□ -0.16
CLN3-230ENST00000568076 OXLD1Q5BKU9 147 aa14.03□□□□□ -0.16
CLN3-230ENST00000568076 C5orf38Q86SI9 138 aa14.02□□□□□ -0.16
CLN3-230ENST00000568076 FLNBO75369 2602 aaKnown RBP14.02□□□□□ -0.17
CLN3-230ENST00000568076 ATP5G1P05496 136 aa14.02□□□□□ -0.17
CLN3-230ENST00000568076 TOMM7Q9P0U1 55 aa14.02□□□□□ -0.17
CLN3-230ENST00000568076 TRAV26-1A0A087WT03 109 aa14.01□□□□□ -0.17
CLN3-230ENST00000568076 ICOSQ9Y6W8 199 aa14.01□□□□□ -0.17
CLN3-230ENST00000568076 SPART-AS1P0CW21 52 aa14□□□□□ -0.17
CLN3-230ENST00000568076 KRTAP10-11P60412 298 aa14□□□□□ -0.17
CLN3-230ENST00000568076 RPL13AP40429 203 aaKnown RBP13.99□□□□□ -0.17
CLN3-230ENST00000568076 CLPSL2Q6UWE3 100 aa13.99□□□□□ -0.17
CLN3-230ENST00000568076 XCL1P47992 114 aa13.98□□□□□ -0.17
CLN3-230ENST00000568076 Q8N3U1 123 aa13.98□□□□□ -0.17
CLN3-230ENST00000568076 FBN1P35555 2871 aaKnown RBP13.97□□□□□ -0.17
CLN3-230ENST00000568076 HTN3P15516 51 aa13.96□□□□□ -0.17
CLN3-230ENST00000568076 SS18Q15532 418 aa13.96□□□□□ -0.18
CLN3-230ENST00000568076 ATXN8Q156A1 80 aa13.95□□□□□ -0.18
CLN3-230ENST00000568076 COPS9Q8WXC6 57 aa13.95□□□□□ -0.18
CLN3-230ENST00000568076 C9JAW5 83 aa13.94□□□□□ -0.18
CLN3-230ENST00000568076 SHISA2Q6UWI4 295 aa13.94□□□□□ -0.18
CLN3-230ENST00000568076 LINC00269Q8N2A0 174 aa13.94□□□□□ -0.18
CLN3-230ENST00000568076 FOXI1Q12951 378 aa13.94□□□□□ -0.18
CLN3-230ENST00000568076 SLC25A20O43772 301 aa13.93□□□□□ -0.18
CLN3-230ENST00000568076 MIR7-3HGQ8N6C7 128 aa13.93□□□□□ -0.18
CLN3-230ENST00000568076 PPDPFQ9H3Y8 114 aa13.93□□□□□ -0.18
CLN3-230ENST00000568076 J3QR89 54 aa13.92□□□□□ -0.18
CLN3-230ENST00000568076 LINC01620Q4KN68 170 aa13.92□□□□□ -0.18
CLN3-230ENST00000568076 TEN1Q86WV5 123 aa13.92□□□□□ -0.18
CLN3-230ENST00000568076 RETNQ9HD89 108 aa13.92□□□□□ -0.18
CLN3-230ENST00000568076 MRPL23Q16540 153 aaKnown RBP13.92□□□□□ -0.18
CLN3-230ENST00000568076 CARD19Q96LW7 228 aa13.92□□□□□ -0.18
CLN3-230ENST00000568076 COX6CP09669 75 aa13.91□□□□□ -0.18
CLN3-230ENST00000568076 PCP4P48539 62 aa13.91□□□□□ -0.18
CLN3-230ENST00000568076 EGFEM1PQ0D2K5 195 aa13.91□□□□□ -0.18
CLN3-230ENST00000568076 ANKRD29Q8N6D5 301 aa13.91□□□□□ -0.18
CLN3-230ENST00000568076 CLEC2BQ92478 149 aa13.91□□□□□ -0.18
CLN3-230ENST00000568076 ANGP03950 147 aaKnown RBP13.9□□□□□ -0.18
CLN3-230ENST00000568076 LINC00158P58513 81 aa13.89□□□□□ -0.19
CLN3-230ENST00000568076 IBA57-AS1B1ANH7 110 aa13.89□□□□□ -0.19
CLN3-230ENST00000568076 M0QXV9 152 aa13.89□□□□□ -0.19
CLN3-230ENST00000568076 C3orf56Q8N813 242 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 365.3 ms