RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CNBPP62633 177 aaKnown RBP5.91□□□□□ -1.46
VPS35-206ENST00000565228 NDUFA5Q16718 116 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 LINC00242Q5T6M2 205 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 DGAT2L7PQ6IED9 249 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 SDIM1Q6ZPB5 146 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 C5orf38Q86SI9 138 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 C9orf163Q8N9P6 203 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 TOMM6Q96B49 74 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 GVQW2A0A096LPI5 108 aaPredicted RBP5.9□□□□□ -1.46
VPS35-206ENST00000565228 hDV102S1A0JD36 115 aa5.9□□□□□ -1.46
VPS35-206ENST00000565228 UBE2D1P51668 147 aa5.9□□□□□ -1.46
VPS35-206ENST00000565228 PMCHL1Q16048 86 aa5.9□□□□□ -1.46
VPS35-206ENST00000565228 COX19Q49B96 90 aa5.9□□□□□ -1.46
VPS35-206ENST00000565228 DMBT1Q9UGM3 2413 aaPredicted RBP5.89□□□□□ -1.47
VPS35-206ENST00000565228 CHTF8P0CG12 524 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 KRTAP10-4P60372 401 aaPredicted RBP5.89□□□□□ -1.47
VPS35-206ENST00000565228 SS18Q15532 418 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 ORMDL2Q53FV1 153 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 SCXQ7RTU7 201 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 PRSS3P2Q8NHM4 247 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 TMEM18Q96B42 140 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 SMCO4Q9NRQ5 59 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 CYSLTR1Q9Y271 337 aa5.89□□□□□ -1.47
VPS35-206ENST00000565228 IFITM10A6NMD0 228 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 C1orf196B1AJZ1 125 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 NUPR1O60356 82 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 TRGC2P03986 189 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 C14orf177Q52M58 125 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 Q8N1X5 172 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 CIRBP-AS1Q8TBR5 109 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 TMEM141Q96I45 108 aa5.88□□□□□ -1.47
VPS35-206ENST00000565228 HMCN2Q8NDA2 5059 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 IGLV4-69A0A075B6H9 119 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 IGHV1-58A0A0C4DH39 117 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 K7EMI3 77 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 CIRBPQ14011 172 aaKnown RBP5.87□□□□□ -1.47
VPS35-206ENST00000565228 KIAA0087Q14695 138 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 PDZD11Q5EBL8 140 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 C10orf25Q5T742 122 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 Q6ZRU5 148 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 FAM19A3Q7Z5A8 133 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 TIMM17AQ99595 171 aa5.87□□□□□ -1.47
VPS35-206ENST00000565228 IGHV3-64A0A075B6Q5 118 aa5.86□□□□□ -1.47
VPS35-206ENST00000565228 A0A0J9YXV3 536 aa5.86□□□□□ -1.47
VPS35-206ENST00000565228 COX7A2LO14548 114 aa5.86□□□□□ -1.47
VPS35-206ENST00000565228 A0A087WZ39 114 aa5.85□□□□□ -1.47
VPS35-206ENST00000565228 LINC00614P0C842 121 aa5.85□□□□□ -1.47
VPS35-206ENST00000565228 TEX43Q6ZNM6 134 aa5.85□□□□□ -1.47
VPS35-206ENST00000565228 FA2HQ7L5A8 372 aa5.85□□□□□ -1.47
VPS35-206ENST00000565228 ERASQ7Z444 233 aa5.85□□□□□ -1.47
VPS35-206ENST00000565228 SCGB3A1Q96QR1 104 aa5.85□□□□□ -1.47
VPS35-206ENST00000565228 CHAC1Q9BUX1 264 aa5.85□□□□□ -1.47
VPS35-206ENST00000565228 FLG2Q5D862 2391 aaPredicted RBP5.85□□□□□ -1.47
VPS35-206ENST00000565228 LRP1Q07954 4544 aaKnown RBP5.84□□□□□ -1.47
VPS35-206ENST00000565228 FAT3Q8TDW7 4589 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 A0A096LNI7 61 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 Q5VSD8 79 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 CFAP161Q6P656 301 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 SPACA4Q8TDM5 124 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 VCX2Q9H322 139 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 CST9LQ9H4G1 147 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 AP5S1Q9NUS5 200 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 CDKN2A-AS1Q9UH64 79 aa5.84□□□□□ -1.47
VPS35-206ENST00000565228 SRRM2Q9UQ35 2752 aaKnown RBP5.83□□□□□ -1.48
VPS35-206ENST00000565228 A6NJY4 79 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.83□□□□□ -1.48
VPS35-206ENST00000565228 NPSP0C0P6 89 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 SPAG11BQ08648 103 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 SMAGPQ0VAQ4 97 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 UNQ6190/PRO20217Q6UXQ8 127 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 FAM19A2Q8N3H0 131 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 ORAOV1Q8WV07 137 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 C6orf48Q9UBA6 75 aa5.83□□□□□ -1.48
VPS35-206ENST00000565228 IGLV5-45A0A087WSX0 123 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 A0A087WYN8 130 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 MALP21145 153 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 HNRNPA3P51991 378 aaKnown RBP5.82□□□□□ -1.48
VPS35-206ENST00000565228 SYCNQ0VAF6 134 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 XP32Q5T750 250 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 C2orf82Q6UX34 121 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 KRTAP7-1Q8IUC3 87 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 CARD19Q96LW7 228 aa5.82□□□□□ -1.48
VPS35-206ENST00000565228 SERF1AO75920 110 aa5.81□□□□□ -1.48
VPS35-206ENST00000565228 HBDP02042 147 aa5.81□□□□□ -1.48
VPS35-206ENST00000565228 IGKV2-24A0A0C4DH68 120 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 TINCRA0A1B0GVN0 87 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 SMIM1B2RUZ4 78 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 EPM2AB3EWF7 344 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 ZNF561-AS1K7EIQ3 104 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 PMVKQ15126 192 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 C9orf116Q5BN46 136 aaPredicted RBP5.8□□□□□ -1.48
VPS35-206ENST00000565228 Q6ZN92 141 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 OR10D4PQ8NGN7 298 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 C2orf48Q96LS8 159 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 CAMK2N2Q96S95 79 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 C2orf88Q9BSF0 95 aa5.8□□□□□ -1.48
VPS35-206ENST00000565228 A0A1W2PNN7 141 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 C11orf86A6NJI1 115 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BKO60814 126 aa5.79□□□□□ -1.48
VPS35-206ENST00000565228 HIST1H2BJP06899 126 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms