RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SEC11AP67812 179 aa14.56□□□□□ -0.08
CLN3-209ENST00000561689 ANGP03950 147 aaKnown RBP14.55□□□□□ -0.08
CLN3-209ENST00000561689 SPINK8P0C7L1 97 aa14.55□□□□□ -0.08
CLN3-209ENST00000561689 TSPEAR-AS2P59090 65 aa14.55□□□□□ -0.08
CLN3-209ENST00000561689 LINC00269Q8N2A0 174 aa14.55□□□□□ -0.08
CLN3-209ENST00000561689 IGLV5-45A0A087WSX0 123 aa14.54□□□□□ -0.08
CLN3-209ENST00000561689 TRAV8-3A0A0A6YYJ7 113 aa14.54□□□□□ -0.08
CLN3-209ENST00000561689 IGLL5B9A064 214 aa14.54□□□□□ -0.08
CLN3-209ENST00000561689 WFDC10BQ8IUB3 73 aa14.54□□□□□ -0.08
CLN3-209ENST00000561689 HIGD1BQ9P298 99 aa14.54□□□□□ -0.08
CLN3-209ENST00000561689 LINC00959A0A1B0GUT2 108 aa14.53□□□□□ -0.08
CLN3-209ENST00000561689 C15orf53Q8NAA6 179 aa14.53□□□□□ -0.08
CLN3-209ENST00000561689 MYMXA0A1B0GTQ4 84 aa14.52□□□□□ -0.09
CLN3-209ENST00000561689 H3BRM9 83 aa14.52□□□□□ -0.09
CLN3-209ENST00000561689 J3QQQ9 107 aa14.52□□□□□ -0.09
CLN3-209ENST00000561689 LEPROTO15243 131 aa14.52□□□□□ -0.09
CLN3-209ENST00000561689 K7EP13 123 aa14.51□□□□□ -0.09
CLN3-209ENST00000561689 ZNF815PA8K554 130 aa14.51□□□□□ -0.09
CLN3-209ENST00000561689 CCL25O15444 150 aa14.51□□□□□ -0.09
CLN3-209ENST00000561689 IGHV3-30P01768 117 aa14.51□□□□□ -0.09
CLN3-209ENST00000561689 IGHV3-33P01772 117 aa14.51□□□□□ -0.09
CLN3-209ENST00000561689 IGHV3-30-3P0DP02 117 aa14.51□□□□□ -0.09
CLN3-209ENST00000561689 IGHV3-30-5P0DP03 117 aa14.51□□□□□ -0.09
CLN3-209ENST00000561689 IGHV1-58A0A0C4DH39 117 aa14.5□□□□□ -0.09
CLN3-209ENST00000561689 LGALS3P17931 250 aaKnown RBP14.49□□□□□ -0.09
CLN3-209ENST00000561689 REG3AQ06141 175 aa14.49□□□□□ -0.09
CLN3-209ENST00000561689 FXYD2P54710 66 aa14.49□□□□□ -0.09
CLN3-209ENST00000561689 KLK12Q9UKR0 248 aa14.49□□□□□ -0.09
CLN3-209ENST00000561689 GCSHP23434 173 aa14.48□□□□□ -0.09
CLN3-209ENST00000561689 XCL1P47992 114 aa14.48□□□□□ -0.09
CLN3-209ENST00000561689 SS18Q15532 418 aa14.48□□□□□ -0.09
CLN3-209ENST00000561689 VAMP3Q15836 100 aa14.48□□□□□ -0.09
CLN3-209ENST00000561689 PLEKHB2Q96CS7 222 aa14.48□□□□□ -0.09
CLN3-209ENST00000561689 UBE2V1Q13404 147 aa14.47□□□□□ -0.09
CLN3-209ENST00000561689 IGHV3OR16-9A0A0B4J2B5 98 aa14.46□□□□□ -0.09
CLN3-209ENST00000561689 A6NDN8 102 aa14.46□□□□□ -0.09
CLN3-209ENST00000561689 SMIM1B2RUZ4 78 aa14.46□□□□□ -0.09
CLN3-209ENST00000561689 PTTG1IPP53801 180 aa14.46□□□□□ -0.09
CLN3-209ENST00000561689 IGLV10-54A0A075B6I4 117 aa14.45□□□□□ -0.1
CLN3-209ENST00000561689 C5orf38Q86SI9 138 aa14.44□□□□□ -0.1
CLN3-209ENST00000561689 NAA38Q9BRA0 125 aaKnown RBP14.44□□□□□ -0.1
CLN3-209ENST00000561689 LINC00588Q9Y4M8 146 aa14.44□□□□□ -0.1
CLN3-209ENST00000561689 IGLV5-39A0A0G2JS06 123 aa14.43□□□□□ -0.1
CLN3-209ENST00000561689 SCGB1D4Q6XE38 83 aa14.43□□□□□ -0.1
CLN3-209ENST00000561689 RAB37Q96AX2 223 aa14.43□□□□□ -0.1
CLN3-209ENST00000561689 CEND1Q8N111 149 aa14.43□□□□□ -0.1
CLN3-209ENST00000561689 PRR34Q9NV39 138 aa14.43□□□□□ -0.1
CLN3-209ENST00000561689 ENHOQ6UWT2 76 aa14.42□□□□□ -0.1
CLN3-209ENST00000561689 CHCHD10Q8WYQ3 142 aaPredicted RBP14.42□□□□□ -0.1
CLN3-209ENST00000561689 CCL18P55774 89 aa14.42□□□□□ -0.1
CLN3-209ENST00000561689 TM2D2Q9BX73 214 aa14.42□□□□□ -0.1
CLN3-209ENST00000561689 A0A087WZ39 114 aa14.41□□□□□ -0.1
CLN3-209ENST00000561689 C9orf118A6NHY6 69 aa14.41□□□□□ -0.1
CLN3-209ENST00000561689 K7ERJ3 54 aa14.41□□□□□ -0.1
CLN3-209ENST00000561689 UBE2WQ96B02 151 aa14.4□□□□□ -0.1
CLN3-209ENST00000561689 NDUFA12Q9UI09 145 aa14.4□□□□□ -0.1
CLN3-209ENST00000561689 FBN3Q75N90 2809 aa14.4□□□□□ -0.1
CLN3-209ENST00000561689 H3BUT2 72 aa14.39□□□□□ -0.11
CLN3-209ENST00000561689 LINC01556Q5JQF7 62 aa14.39□□□□□ -0.11
CLN3-209ENST00000561689 ZFAND6Q6FIF0 208 aa14.39□□□□□ -0.11
CLN3-209ENST00000561689 CD164L2Q6UWJ8 174 aa14.39□□□□□ -0.11
CLN3-209ENST00000561689 C10orf126Q8N4M7 172 aa14.39□□□□□ -0.11
CLN3-209ENST00000561689 CRPP02741 224 aa14.38□□□□□ -0.11
CLN3-209ENST00000561689 HIST1H4GQ99525 98 aa14.38□□□□□ -0.11
CLN3-209ENST00000561689 TAL2Q16559 108 aa14.37□□□□□ -0.11
CLN3-209ENST00000561689 NHP2Q9NX24 153 aaKnown RBP14.37□□□□□ -0.11
CLN3-209ENST00000561689 SMIM13P0DJ93 91 aa14.36□□□□□ -0.11
CLN3-209ENST00000561689 CSMD3Q7Z407 3707 aa14.36□□□□□ -0.11
CLN3-209ENST00000561689 TOMM7Q9P0U1 55 aa14.36□□□□□ -0.11
CLN3-209ENST00000561689 DNAH10OSP0CZ25 163 aa14.35□□□□□ -0.11
CLN3-209ENST00000561689 FOXI1Q12951 378 aa14.35□□□□□ -0.11
CLN3-209ENST00000561689 APLNQ9ULZ1 77 aa14.35□□□□□ -0.11
CLN3-209ENST00000561689 A0A0J9YXY3 114 aa14.34□□□□□ -0.11
CLN3-209ENST00000561689 GAGE12HA6NDE8 117 aa14.34□□□□□ -0.11
CLN3-209ENST00000561689 COX7A2LO14548 114 aa14.34□□□□□ -0.11
CLN3-209ENST00000561689 COX7B2Q8TF08 81 aa14.34□□□□□ -0.11
CLN3-209ENST00000561689 Q9H8V8 135 aa14.34□□□□□ -0.11
CLN3-209ENST00000561689 NDUFA1O15239 70 aa14.33□□□□□ -0.12
CLN3-209ENST00000561689 DYNC2H1Q8NCM8 4307 aaKnown RBP14.33□□□□□ -0.12
CLN3-209ENST00000561689 NUPR2A6NF83 97 aa14.33□□□□□ -0.12
CLN3-209ENST00000561689 MIAQ16674 131 aa14.32□□□□□ -0.12
CLN3-209ENST00000561689 ZNF625Q96I27 306 aaPredicted RBP14.32□□□□□ -0.12
CLN3-209ENST00000561689 TRAV8-4A0A0B4J246 113 aa14.31□□□□□ -0.12
CLN3-209ENST00000561689 SRSF9Q13242 221 aaKnown RBP eCLIP14.31□□□□□ -0.12
CLN3-209ENST00000561689 MALP21145 153 aa14.31□□□□□ -0.12
CLN3-209ENST00000561689 UPK3BQ9BT76 320 aa14.31□□□□□ -0.12
CLN3-209ENST00000561689 DNAH7Q8WXX0 4024 aa14.3□□□□□ -0.12
CLN3-209ENST00000561689 A0A1W2PPM0 123 aa14.3□□□□□ -0.12
CLN3-209ENST00000561689 KLK5Q9Y337 293 aaPredicted RBP14.3□□□□□ -0.12
CLN3-209ENST00000561689 LYSTQ99698 3801 aa14.3□□□□□ -0.12
CLN3-209ENST00000561689 GAGE10A6NGK3 116 aa14.29□□□□□ -0.12
CLN3-209ENST00000561689 LINC01561Q8N1V8 128 aa14.29□□□□□ -0.12
CLN3-209ENST00000561689 TENM2Q9NT68 2774 aa14.28□□□□□ -0.12
CLN3-209ENST00000561689 LITAFQ99732 161 aa14.27□□□□□ -0.12
CLN3-209ENST00000561689 SPANXB1Q9NS25 103 aaPredicted RBP14.27□□□□□ -0.12
CLN3-209ENST00000561689 K7EP34 96 aa14.27□□□□□ -0.13
CLN3-209ENST00000561689 C6orf226Q5I0X4 101 aa14.27□□□□□ -0.13
CLN3-209ENST00000561689 Q9HAA7 133 aa14.27□□□□□ -0.13
CLN3-209ENST00000561689 ADAMTSL4-AS1Q5T5F5 129 aa14.26□□□□□ -0.13
CLN3-209ENST00000561689 UBE2DNLQ8IWF7 75 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms