RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 UBE2D2P62837 147 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 SPAG11BQ08648 103 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 S100A7L2Q5SY68 101 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 SPANXA1Q9NS26 97 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 TRRAPQ9Y4A5 3859 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 IGLV4-3A0A075B6K6 122 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 J3QQQ9 107 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 NDUFS6O75380 124 aaKnown RBP3.83□□□□□ -1.8
VPS13C-209ENST00000560637 POLR2KP53803 58 aaKnown RBP3.83□□□□□ -1.8
VPS13C-209ENST00000560637 C2orf82Q6UX34 121 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 CST9LQ9H4G1 147 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 HERVK_113P63121 156 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 ESRGQ1W209 222 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 FAM19A4Q96LR4 140 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 XAGE1AQ9HD64 81 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 SCRT2Q9NQ03 307 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 M0R143 59 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 SH2D6Q7Z4S9 175 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 CSNK1G2-AS1Q8NCQ2 148 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 TOMM6Q96B49 74 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 TRBV27A0A0K0K1C4 114 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 MYMXA0A1B0GTQ4 84 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 BOD1L2Q8IYS8 172 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 RMI2Q96E14 147 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 B9D2Q9BPU9 175 aa3.82□□□□□ -1.8
VPS13C-209ENST00000560637 EIF4EBP3O60516 100 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-209ENST00000560637 FUSP35637 526 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS13C-209ENST00000560637 LYPD5Q6UWN5 251 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 PLEKHB2Q96CS7 222 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 LINC01620Q4KN68 170 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 LELP1Q5T871 98 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 URB1-AS1Q96HZ7 61 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 YPEL4Q96NS1 127 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 CNFNQ9BYD5 112 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 NUPR2A6NF83 97 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 LGALS9CQ6DKI2 356 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 C15orf53Q8NAA6 179 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 KIF25-AS1Q9Y6Z4 181 aa3.81□□□□□ -1.8
VPS13C-209ENST00000560637 LINC00587B1AMM8 73 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 UBE2BP63146 152 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 NTM-AS1Q6ZSK4 140 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 LINC01549A6NIU2 74 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 LINC00310P59036 64 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 LINC00315P59091 139 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 MUC7Q8TAX7 377 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-209ENST00000560637 NHLRC4P0CG21 123 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-209ENST00000560637 C9orf116Q5BN46 136 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-209ENST00000560637 COX8CQ7Z4L0 72 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 MTURNQ8N3F0 131 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 TIMM17AQ99595 171 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 UBE2D4Q9Y2X8 147 aa3.8□□□□□ -1.8
VPS13C-209ENST00000560637 LRCOL1A6NCL2 159 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 H3BS24 57 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 H3BUT2 72 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 EGFEM1PQ0D2K5 195 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 LINC00959A0A1B0GUT2 108 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 TMEM238C9JI98 176 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 K7ERJ3 54 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 Q6ZVH6 145 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 NKAPP1Q8N9T2 125 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 COX7B2Q8TF08 81 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 IGKV2D-26A0A0A0MRZ7 120 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 TRBV6-5A0A0K0K1A5 114 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 RPL24P83731 157 aaKnown RBP3.79□□□□□ -1.8
VPS13C-209ENST00000560637 SPATA12Q7Z6I5 190 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 CHCHD7Q9BUK0 85 aa3.79□□□□□ -1.8
VPS13C-209ENST00000560637 TENM2Q9NT68 2774 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 PLAC8L1A1L4L8 177 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 SNCGO76070 127 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 LBHQ53QV2 105 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-209ENST00000560637 COA6Q5JTJ3 125 aaKnown RBP3.78□□□□□ -1.8
VPS13C-209ENST00000560637 C10orf126Q8N4M7 172 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 TM2D2Q9BX73 214 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 K7EP13 123 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 ZNF22P17026 224 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-209ENST00000560637 COX6A2Q02221 97 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 C6orf223Q8N319 242 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 MIR7-3HGQ8N6C7 128 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 CDC42SE2Q9NRR3 84 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 PLA2G2DQ9UNK4 145 aa3.78□□□□□ -1.8
VPS13C-209ENST00000560637 NCR3O14931 201 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 NDUFA1O15239 70 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 LINC01545Q5VT33 79 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 DNAL4O96015 105 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 COX6CP09669 75 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 IGLC3P0DOY3 106 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 WWC2-AS2Q96NR7 200 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 VPS25Q9BRG1 176 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 LINC00588Q9Y4M8 146 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 A0A096LNJ9 63 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 PIK3CD-AS1Q5SR53 167 aa3.77□□□□□ -1.81
VPS13C-209ENST00000560637 LEPROTO15243 131 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 HAMPP81172 84 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 FOXI1Q12951 378 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 COL5A1-AS1Q5SY13 56 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 LINC00242Q5T6M2 205 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 UNQ6190/PRO20217Q6UXQ8 127 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 FAM19A5Q7Z5A7 132 aaPredicted RBP3.76□□□□□ -1.81
VPS13C-209ENST00000560637 IGLV4-69A0A075B6H9 119 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms