RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 NFE4Q86UQ8 179 aa9.48□□□□□ -0.89
LDLR-213ENST00000560502 OR5A1Q8NGJ0 315 aa9.48□□□□□ -0.89
LDLR-213ENST00000560502 SIVA1O15304 175 aa9.47□□□□□ -0.89
LDLR-213ENST00000560502 IGLC3P0DOY3 106 aa9.47□□□□□ -0.89
LDLR-213ENST00000560502 SEC11AP67812 179 aa9.47□□□□□ -0.89
LDLR-213ENST00000560502 IGLV4-69A0A075B6H9 119 aa9.46□□□□□ -0.9
LDLR-213ENST00000560502 hDV102S1A0JD36 115 aa9.46□□□□□ -0.9
LDLR-213ENST00000560502 XGP55808 180 aa9.46□□□□□ -0.9
LDLR-213ENST00000560502 Q6ZUT4 128 aa9.46□□□□□ -0.9
LDLR-213ENST00000560502 CHCHD5Q9BSY4 110 aa9.46□□□□□ -0.9
LDLR-213ENST00000560502 PGPEP1Q9NXJ5 209 aa9.46□□□□□ -0.9
LDLR-213ENST00000560502 UQCR10Q9UDW1 63 aa9.46□□□□□ -0.9
LDLR-213ENST00000560502 A0A1B0GUV1 79 aa9.45□□□□□ -0.9
LDLR-213ENST00000560502 FUSP35637 526 aaKnown RBP eCLIP9.45□□□□□ -0.9
LDLR-213ENST00000560502 HERVK_113P61574 105 aa9.45□□□□□ -0.9
LDLR-213ENST00000560502 LELP1Q5T871 98 aa9.45□□□□□ -0.9
LDLR-213ENST00000560502 FAM104AQ969W3 186 aa9.45□□□□□ -0.9
LDLR-213ENST00000560502 MIEN1Q9BRT3 115 aa9.45□□□□□ -0.9
LDLR-213ENST00000560502 C11orf86A6NJI1 115 aa9.44□□□□□ -0.9
LDLR-213ENST00000560502 DDTP30046 118 aa9.44□□□□□ -0.9
LDLR-213ENST00000560502 MAJINQ3KP22 176 aa9.44□□□□□ -0.9
LDLR-213ENST00000560502 ZC2HC1BQ5TFG8 222 aa9.44□□□□□ -0.9
LDLR-213ENST00000560502 FAM19A3Q7Z5A8 133 aa9.44□□□□□ -0.9
LDLR-213ENST00000560502 PRO1933Q9H354 126 aa9.44□□□□□ -0.9
LDLR-213ENST00000560502 CDC42SE2Q9NRR3 84 aa9.44□□□□□ -0.9
LDLR-213ENST00000560502 VPS13BQ7Z7G8 4022 aa9.43□□□□□ -0.9
LDLR-213ENST00000560502 FLG2Q5D862 2391 aaPredicted RBP9.43□□□□□ -0.9
LDLR-213ENST00000560502 TINCRA0A1B0GVN0 87 aa9.43□□□□□ -0.9
LDLR-213ENST00000560502 INAFM2P0DMQ5 153 aa9.43□□□□□ -0.9
LDLR-213ENST00000560502 OPRPNQ99935 248 aaPredicted RBP9.43□□□□□ -0.9
LDLR-213ENST00000560502 CHAC1Q9BUX1 264 aa9.43□□□□□ -0.9
LDLR-213ENST00000560502 PCP4L1A6NKN8 68 aa9.42□□□□□ -0.9
LDLR-213ENST00000560502 EREGO14944 169 aa9.42□□□□□ -0.9
LDLR-213ENST00000560502 DLEU1O43261 78 aa9.42□□□□□ -0.9
LDLR-213ENST00000560502 DNAH10OSP0CZ25 163 aa9.42□□□□□ -0.9
LDLR-213ENST00000560502 COX8AP10176 69 aa9.42□□□□□ -0.9
LDLR-213ENST00000560502 UBE2D1P51668 147 aa9.42□□□□□ -0.9
LDLR-213ENST00000560502 A0A087WTM6 91 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 E9PLD3 99 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 CCL25O15444 150 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 KRTAP10-1P60331 282 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 GAGE6Q13070 117 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 ANKRD39Q53RE8 183 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 Q5VSD8 79 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 SLC25A34Q6PIV7 304 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 LYPD5Q6UWN5 251 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 STPG4Q8N801 248 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 MYCBP2O75592 4640 aa9.41□□□□□ -0.9
LDLR-213ENST00000560502 IGLV5-45A0A087WSX0 123 aa9.4□□□□□ -0.9
LDLR-213ENST00000560502 HERVK_113P63121 156 aa9.4□□□□□ -0.9
LDLR-213ENST00000560502 GEMIN7Q9H840 131 aaKnown RBP9.4□□□□□ -0.9
LDLR-213ENST00000560502 TRAV8-6A0A0B4J262 113 aa9.39□□□□□ -0.91
LDLR-213ENST00000560502 A0A0J9YXV3 536 aa9.39□□□□□ -0.91
LDLR-213ENST00000560502 TMEM170BQ5T4T1 132 aa9.39□□□□□ -0.91
LDLR-213ENST00000560502 H3BRM9 83 aa9.38□□□□□ -0.91
LDLR-213ENST00000560502 ZNF22P17026 224 aaPredicted RBP9.38□□□□□ -0.91
LDLR-213ENST00000560502 RBX1P62877 108 aa9.38□□□□□ -0.91
LDLR-213ENST00000560502 BOD1L2Q8IYS8 172 aa9.38□□□□□ -0.91
LDLR-213ENST00000560502 C14orf144Q96I85 54 aa9.38□□□□□ -0.91
LDLR-213ENST00000560502 SRRM2Q9UQ35 2752 aaKnown RBP9.37□□□□□ -0.91
LDLR-213ENST00000560502 TMEM223A0PJW6 202 aa9.37□□□□□ -0.91
LDLR-213ENST00000560502 TMEM262E9PQX1 116 aa9.37□□□□□ -0.91
LDLR-213ENST00000560502 K7EP13 123 aa9.37□□□□□ -0.91
LDLR-213ENST00000560502 NMUP48645 174 aa9.37□□□□□ -0.91
LDLR-213ENST00000560502 HNRNPA3P51991 378 aaKnown RBP9.37□□□□□ -0.91
LDLR-213ENST00000560502 RNASE13Q5GAN3 156 aaKnown RBP9.37□□□□□ -0.91
LDLR-213ENST00000560502 WFDC10BQ8IUB3 73 aa9.37□□□□□ -0.91
LDLR-213ENST00000560502 IGLV4-60A0A075B6I1 120 aa9.36□□□□□ -0.91
LDLR-213ENST00000560502 MPV17L2Q567V2 206 aa9.36□□□□□ -0.91
LDLR-213ENST00000560502 LINC00242Q5T6M2 205 aa9.36□□□□□ -0.91
LDLR-213ENST00000560502 PLEKHB2Q96CS7 222 aa9.36□□□□□ -0.91
LDLR-213ENST00000560502 LEPROTO15243 131 aa9.35□□□□□ -0.91
LDLR-213ENST00000560502 LINC00469Q8N7U9 141 aa9.35□□□□□ -0.91
LDLR-213ENST00000560502 IGKV2D-26A0A0A0MRZ7 120 aa9.34□□□□□ -0.91
LDLR-213ENST00000560502 TRAV13-1A0A0B4J241 112 aa9.34□□□□□ -0.91
LDLR-213ENST00000560502 GCSHP23434 173 aa9.34□□□□□ -0.91
LDLR-213ENST00000560502 LINC00587B1AMM8 73 aa9.33□□□□□ -0.92
LDLR-213ENST00000560502 SS18Q15532 418 aa9.33□□□□□ -0.92
LDLR-213ENST00000560502 HIGD1BQ9P298 99 aa9.33□□□□□ -0.92
LDLR-213ENST00000560502 DNAH8Q96JB1 4490 aa9.33□□□□□ -0.92
LDLR-213ENST00000560502 IGHV1-58A0A0C4DH39 117 aa9.32□□□□□ -0.92
LDLR-213ENST00000560502 MYMXA0A1B0GTQ4 84 aa9.32□□□□□ -0.92
LDLR-213ENST00000560502 LINC00959A0A1B0GUT2 108 aa9.32□□□□□ -0.92
LDLR-213ENST00000560502 SMR3BP02814 79 aaPredicted RBP9.32□□□□□ -0.92
LDLR-213ENST00000560502 LINC01561Q8N1V8 128 aa9.32□□□□□ -0.92
LDLR-213ENST00000560502 LRCOL1A6NCL2 159 aa9.31□□□□□ -0.92
LDLR-213ENST00000560502 J3QQQ9 107 aa9.31□□□□□ -0.92
LDLR-213ENST00000560502 ANGP03950 147 aaKnown RBP9.31□□□□□ -0.92
LDLR-213ENST00000560502 LGALS3P17931 250 aaKnown RBP9.31□□□□□ -0.92
LDLR-213ENST00000560502 PCP2Q8IVA1 136 aa9.31□□□□□ -0.92
LDLR-213ENST00000560502 C10orf126Q8N4M7 172 aa9.31□□□□□ -0.92
LDLR-213ENST00000560502 PRR34Q9NV39 138 aa9.31□□□□□ -0.92
LDLR-213ENST00000560502 CDKN2A-AS1Q9UH64 79 aa9.31□□□□□ -0.92
LDLR-213ENST00000560502 HAMPP81172 84 aa9.3□□□□□ -0.92
LDLR-213ENST00000560502 REG3AQ06141 175 aa9.3□□□□□ -0.92
LDLR-213ENST00000560502 LINC01556Q5JQF7 62 aa9.3□□□□□ -0.92
LDLR-213ENST00000560502 IGHV3OR16-9A0A0B4J2B5 98 aa9.29□□□□□ -0.92
LDLR-213ENST00000560502 IGLV5-39A0A0G2JS06 123 aa9.29□□□□□ -0.92
LDLR-213ENST00000560502 ZNF815PA8K554 130 aa9.29□□□□□ -0.92
LDLR-213ENST00000560502 IGHV3-30-3P0DP02 117 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms