RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 NF1P21359 2839 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 IGHV3-64A0A075B6Q5 118 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 TRBV6-8A0A0A6YYG3 113 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 KRTAP4-8A0A0G2JLE6 195 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 TRBV30A0A0K0K1B3 111 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 SMIM1B2RUZ4 78 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 INAFM1C9JVW0 142 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 H3BMG7 143 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 RNASE13Q5GAN3 156 aaKnown RBP6.85□□□□□ -1.31
RTF1-206ENST00000560447 LINC01600Q96MT4 127 aa6.85□□□□□ -1.31
RTF1-206ENST00000560447 ACANP16112 2415 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 LOC107984156A0A0G2JMH3 177 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 ARL17AQ8IVW1 177 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 LINC01561Q8N1V8 128 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 WFDC9Q8NEX5 89 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 VPS25Q9BRG1 176 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 PRO0255Q9UI72 69 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 X6R8D5 127 aa6.84□□□□□ -1.31
RTF1-206ENST00000560447 A0A1B0GUV1 79 aa6.83□□□□□ -1.32
RTF1-206ENST00000560447 F5H768 121 aa6.83□□□□□ -1.32
RTF1-206ENST00000560447 SETXQ7Z333 2677 aaKnown RBP6.82□□□□□ -1.32
RTF1-206ENST00000560447 MIFP14174 115 aa6.82□□□□□ -1.32
RTF1-206ENST00000560447 PSMB2P49721 201 aa6.82□□□□□ -1.32
RTF1-206ENST00000560447 COX6A2Q02221 97 aa6.82□□□□□ -1.32
RTF1-206ENST00000560447 WFDC2Q14508 124 aa6.82□□□□□ -1.32
RTF1-206ENST00000560447 RNF151Q2KHN1 245 aa6.82□□□□□ -1.32
RTF1-206ENST00000560447 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.82□□□□□ -1.32
RTF1-206ENST00000560447 ZNF625Q96I27 306 aaPredicted RBP6.82□□□□□ -1.32
RTF1-206ENST00000560447 TRAV26-1A0A087WT03 109 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 TRAV13-1A0A0B4J241 112 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 TEX48A0A1B0GUV7 120 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 PRSS2P07478 247 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 COX6CP09669 75 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 SCGB1C2P0DMR2 95 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 SH2D6Q7Z4S9 175 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 Q9H8V8 135 aa6.81□□□□□ -1.32
RTF1-206ENST00000560447 MTORP42345 2549 aa6.8□□□□□ -1.32
RTF1-206ENST00000560447 LOC100131303A0A0U1RQF7 123 aa6.8□□□□□ -1.32
RTF1-206ENST00000560447 TCL1BO95988 128 aa6.8□□□□□ -1.32
RTF1-206ENST00000560447 ATXN8Q156A1 80 aa6.8□□□□□ -1.32
RTF1-206ENST00000560447 ADAMTSL4-AS1Q5T5F5 129 aa6.8□□□□□ -1.32
RTF1-206ENST00000560447 CHCHD5Q9BSY4 110 aa6.8□□□□□ -1.32
RTF1-206ENST00000560447 FASNP49327 2511 aaKnown RBP6.8□□□□□ -1.32
RTF1-206ENST00000560447 A0A087WZ39 114 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 GYPEP15421 78 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 GAGE6Q13070 117 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 Q1RN00 199 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 ETDBQ3ZM63 59 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 FAM222AQ5U5X8 452 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 TEN1Q86WV5 123 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 PRIMA1Q86XR5 153 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 LINC00308Q8TCZ7 52 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 COX7B2Q8TF08 81 aa6.79□□□□□ -1.32
RTF1-206ENST00000560447 IGHV3OR16-9A0A0B4J2B5 98 aa6.78□□□□□ -1.32
RTF1-206ENST00000560447 DEFB130BP0DP73 79 aa6.78□□□□□ -1.32
RTF1-206ENST00000560447 DEFB130AP0DP74 79 aa6.78□□□□□ -1.32
RTF1-206ENST00000560447 PPDPFLQ8WWR9 84 aa6.78□□□□□ -1.32
RTF1-206ENST00000560447 ICOSQ9Y6W8 199 aa6.78□□□□□ -1.32
RTF1-206ENST00000560447 GCN1Q92616 2671 aaKnown RBP6.77□□□□□ -1.33
RTF1-206ENST00000560447 A8MZ25 164 aa6.77□□□□□ -1.33
RTF1-206ENST00000560447 ATP5G1P05496 136 aa6.77□□□□□ -1.33
RTF1-206ENST00000560447 FOXI1Q12951 378 aa6.77□□□□□ -1.33
RTF1-206ENST00000560447 SS18Q15532 418 aa6.77□□□□□ -1.33
RTF1-206ENST00000560447 MEIG1Q5JSS6 88 aa6.77□□□□□ -1.33
RTF1-206ENST00000560447 IGLV4-60A0A075B6I1 120 aa6.76□□□□□ -1.33
RTF1-206ENST00000560447 LINC00959A0A1B0GUT2 108 aa6.76□□□□□ -1.33
RTF1-206ENST00000560447 IBA57-AS1B1ANH7 110 aa6.76□□□□□ -1.33
RTF1-206ENST00000560447 H3BT86 120 aa6.76□□□□□ -1.33
RTF1-206ENST00000560447 DAD1P61803 113 aa6.76□□□□□ -1.33
RTF1-206ENST00000560447 LINC01620Q4KN68 170 aa6.76□□□□□ -1.33
RTF1-206ENST00000560447 SPATA25Q9BR10 227 aa6.76□□□□□ -1.33
RTF1-206ENST00000560447 NSD1Q96L73 2696 aaPredicted RBP6.76□□□□□ -1.33
RTF1-206ENST00000560447 IGHV4-28A0A0C4DH34 117 aa6.75□□□□□ -1.33
RTF1-206ENST00000560447 TRBV10-2A0A0K0K1G8 114 aa6.75□□□□□ -1.33
RTF1-206ENST00000560447 TRIAP1O43715 76 aa6.75□□□□□ -1.33
RTF1-206ENST00000560447 SLC25A20O43772 301 aa6.75□□□□□ -1.33
RTF1-206ENST00000560447 SPART-AS1P0CW21 52 aa6.75□□□□□ -1.33
RTF1-206ENST00000560447 RPL13AP40429 203 aaKnown RBP6.75□□□□□ -1.33
RTF1-206ENST00000560447 Q8NAQ8 132 aa6.75□□□□□ -1.33
RTF1-206ENST00000560447 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.75□□□□□ -1.33
RTF1-206ENST00000560447 JMJD1CQ15652 2540 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 TRAV13-2A0A0B4J235 113 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 SCGB1A1P11684 91 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 CXCL5P42830 114 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 PCP4P48539 62 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 MRPL23Q16540 153 aaKnown RBP6.74□□□□□ -1.33
RTF1-206ENST00000560447 DEFB135Q30KP9 77 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 Q8IZM0 81 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 CUBNO60494 3623 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 OTOGQ6ZRI0 2925 aa6.74□□□□□ -1.33
RTF1-206ENST00000560447 C2CD3Q4AC94 2353 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 C9JAW5 83 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 TMEM262E9PQX1 116 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 LST1O00453 97 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 ANKRD29Q8N6D5 301 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 MUC7Q8TAX7 377 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 CARD19Q96LW7 228 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 SETD2Q9BYW2 2564 aaPredicted RBP6.73□□□□□ -1.33
RTF1-206ENST00000560447 NOTCH3Q9UM47 2321 aa6.73□□□□□ -1.33
RTF1-206ENST00000560447 GAGE12HA6NDE8 117 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms