RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 C2orf66Q6UXQ4 117 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 LINC00173Q6ZV60 143 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 MRPL52Q86TS9 123 aaKnown RBP6.21□□□□□ -1.42
LDLR-211ENST00000560173 MAPKAPK5-AS1Q8N8E1 139 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 C20orf203Q8NBC4 194 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 TIMM17AQ99595 171 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 MIEN1Q9BRT3 115 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 PRR34Q9NV39 138 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 UQCR10Q9UDW1 63 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 COX11Q9Y6N1 276 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 IGLV4-60A0A075B6I1 120 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 H0Y8G0 127 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 PLNP26678 52 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 FUSP35637 526 aaKnown RBP eCLIP6.2□□□□□ -1.42
LDLR-211ENST00000560173 MIAQ16674 131 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 LINC00269Q8N2A0 174 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 PMCHL2Q9BQD1 86 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 PRO1933Q9H354 126 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 PGPEP1Q9NXJ5 209 aa6.2□□□□□ -1.42
LDLR-211ENST00000560173 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.19□□□□□ -1.42
LDLR-211ENST00000560173 IGKV2-29A2NJV5 120 aaPredicted RBP6.19□□□□□ -1.42
LDLR-211ENST00000560173 H7C423 109 aa6.19□□□□□ -1.42
LDLR-211ENST00000560173 DPM2O94777 84 aa6.19□□□□□ -1.42
LDLR-211ENST00000560173 CLPSL2Q6UWE3 100 aa6.19□□□□□ -1.42
LDLR-211ENST00000560173 Q8N814 137 aa6.19□□□□□ -1.42
LDLR-211ENST00000560173 C1orf43Q9BWL3 253 aa6.19□□□□□ -1.42
LDLR-211ENST00000560173 LECT2O14960 151 aa6.18□□□□□ -1.42
LDLR-211ENST00000560173 IGKCP01834 107 aa6.18□□□□□ -1.42
LDLR-211ENST00000560173 FGF6P10767 208 aa6.18□□□□□ -1.42
LDLR-211ENST00000560173 REG3AQ06141 175 aa6.18□□□□□ -1.42
LDLR-211ENST00000560173 ODF1Q14990 250 aa6.18□□□□□ -1.42
LDLR-211ENST00000560173 LBHQ53QV2 105 aaPredicted RBP6.18□□□□□ -1.42
LDLR-211ENST00000560173 KRTAP26-1Q6PEX3 210 aa6.18□□□□□ -1.42
LDLR-211ENST00000560173 NTN5Q8WTR8 489 aaPredicted RBP6.18□□□□□ -1.42
LDLR-211ENST00000560173 BAALCQ8WXS3 180 aa6.18□□□□□ -1.42
LDLR-211ENST00000560173 F8VRH5 84 aa6.17□□□□□ -1.42
LDLR-211ENST00000560173 IGLC3P0DOY3 106 aa6.17□□□□□ -1.42
LDLR-211ENST00000560173 AMMECR1LQ6DCA0 310 aa6.17□□□□□ -1.42
LDLR-211ENST00000560173 ATOH7Q8N100 152 aa6.17□□□□□ -1.42
LDLR-211ENST00000560173 SPANXA1Q9NS26 97 aa6.17□□□□□ -1.42
LDLR-211ENST00000560173 PYGO1Q9Y3Y4 419 aa6.17□□□□□ -1.42
LDLR-211ENST00000560173 IGLV5-52A0A0A0MRZ9 124 aa6.16□□□□□ -1.42
LDLR-211ENST00000560173 IGIPA6NJ69 53 aa6.16□□□□□ -1.42
LDLR-211ENST00000560173 LINC00587B1AMM8 73 aa6.16□□□□□ -1.42
LDLR-211ENST00000560173 ZNF25P17030 456 aaPredicted RBP6.16□□□□□ -1.42
LDLR-211ENST00000560173 PMVKQ15126 192 aa6.16□□□□□ -1.42
LDLR-211ENST00000560173 SLC25A34Q6PIV7 304 aa6.16□□□□□ -1.42
LDLR-211ENST00000560173 CHTOPQ9Y3Y2 248 aaKnown RBP6.16□□□□□ -1.42
LDLR-211ENST00000560173 DNAH8Q96JB1 4490 aa6.16□□□□□ -1.42
LDLR-211ENST00000560173 IGLV10-54A0A075B6I4 117 aa6.15□□□□□ -1.42
LDLR-211ENST00000560173 TRAV8-4A0A0B4J246 113 aa6.15□□□□□ -1.42
LDLR-211ENST00000560173 CDK2AP2O75956 126 aa6.15□□□□□ -1.42
LDLR-211ENST00000560173 HNRNPA3P51991 378 aaKnown RBP6.15□□□□□ -1.42
LDLR-211ENST00000560173 KRTAP10-1P60331 282 aa6.15□□□□□ -1.42
LDLR-211ENST00000560173 TIMM21Q9BVV7 248 aa6.15□□□□□ -1.42
LDLR-211ENST00000560173 hDV102S1A0JD36 115 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 USP17L23D6RBM5 183 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 DLEU1O43261 78 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 COX8AP10176 69 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 GCSHP23434 173 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 HERVK_113P61574 105 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 ANKRD39Q53RE8 183 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 OR5A1Q8NGJ0 315 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 TMEM101Q96IK0 257 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 VCX2Q9H322 139 aa6.14□□□□□ -1.43
LDLR-211ENST00000560173 MRPL35Q9NZE8 188 aaKnown RBP6.14□□□□□ -1.43
LDLR-211ENST00000560173 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.13□□□□□ -1.43
LDLR-211ENST00000560173 IGKV3OR2-268A0A0C4DH90 116 aa6.13□□□□□ -1.43
LDLR-211ENST00000560173 M0R143 59 aa6.13□□□□□ -1.43
LDLR-211ENST00000560173 C14orf177Q52M58 125 aa6.13□□□□□ -1.43
LDLR-211ENST00000560173 C2orf88Q9BSF0 95 aa6.13□□□□□ -1.43
LDLR-211ENST00000560173 CST9LQ9H4G1 147 aa6.13□□□□□ -1.43
LDLR-211ENST00000560173 CDC42SE2Q9NRR3 84 aa6.13□□□□□ -1.43
LDLR-211ENST00000560173 UBE2D4Q9Y2X8 147 aa6.13□□□□□ -1.43
LDLR-211ENST00000560173 CSDC2Q9Y534 153 aaKnown RBP6.13□□□□□ -1.43
LDLR-211ENST00000560173 RPL39P62891 51 aaKnown RBP6.12□□□□□ -1.43
LDLR-211ENST00000560173 MRPS36P82909 103 aaKnown RBP6.12□□□□□ -1.43
LDLR-211ENST00000560173 ZC2HC1BQ5TFG8 222 aa6.12□□□□□ -1.43
LDLR-211ENST00000560173 DGAT2L7PQ6IED9 249 aa6.12□□□□□ -1.43
LDLR-211ENST00000560173 CHCHD10Q8WYQ3 142 aaPredicted RBP6.12□□□□□ -1.43
LDLR-211ENST00000560173 C14orf144Q96I85 54 aa6.12□□□□□ -1.43
LDLR-211ENST00000560173 GAGE12HA6NDE8 117 aa6.11□□□□□ -1.43
LDLR-211ENST00000560173 SEC11AP67812 179 aa6.11□□□□□ -1.43
LDLR-211ENST00000560173 MAJINQ3KP22 176 aa6.11□□□□□ -1.43
LDLR-211ENST00000560173 IGLV4-3A0A075B6K6 122 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 LINC00959A0A1B0GUT2 108 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 C11orf86A6NJI1 115 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 FOXI1Q12951 378 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 Q6ZUT4 128 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 BOD1L2Q8IYS8 172 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 STPG4Q8N801 248 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 AMELXQ99217 191 aa6.1□□□□□ -1.43
LDLR-211ENST00000560173 E9PLD3 99 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 CCL25O15444 150 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 XCL1P47992 114 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 NMUP48645 174 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 XGP55808 180 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 CTAG1AP78358 180 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 RNASE13Q5GAN3 156 aaKnown RBP6.09□□□□□ -1.43
LDLR-211ENST00000560173 C15orf56Q8N910 161 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms