RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 FAM74A4Q5TZK3 123 aa5.81□□□□□ -1.48
USP3-211ENST00000559257 CNEP1R1Q8N9A8 125 aa5.81□□□□□ -1.48
USP3-211ENST00000559257 M0R2N4 97 aa5.8□□□□□ -1.48
USP3-211ENST00000559257 COX6A2Q02221 97 aa5.8□□□□□ -1.48
USP3-211ENST00000559257 LINC00242Q5T6M2 205 aa5.8□□□□□ -1.48
USP3-211ENST00000559257 C22orf34Q6ZV56 151 aa5.8□□□□□ -1.48
USP3-211ENST00000559257 S4R3C0 116 aa5.8□□□□□ -1.48
USP3-211ENST00000559257 IGHV3-49A0A0A0MS15 119 aa5.8□□□□□ -1.48
USP3-211ENST00000559257 ABCA1O95477 2261 aa5.8□□□□□ -1.48
USP3-211ENST00000559257 TMEM105Q8N8V8 129 aa5.79□□□□□ -1.48
USP3-211ENST00000559257 PRO3102Q9H379 93 aa5.79□□□□□ -1.48
USP3-211ENST00000559257 MUC7Q8TAX7 377 aa5.79□□□□□ -1.48
USP3-211ENST00000559257 B9D2Q9BPU9 175 aa5.79□□□□□ -1.48
USP3-211ENST00000559257 CELA1Q9UNI1 258 aa5.79□□□□□ -1.48
USP3-211ENST00000559257 PTPRQQ9UMZ3 2332 aa5.79□□□□□ -1.48
USP3-211ENST00000559257 CASC2Q6XLA1 102 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 SCXQ7RTU7 201 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 PRSS33Q8NF86 280 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 LAMA3Q16787 3333 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 IGHV3OR16-12A0A075B7B8 117 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 A0A096LNT2 108 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 IGHV7-81A0A0B4J1V7 117 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 SPANXA2-OT1Q8N9U9 137 aa5.78□□□□□ -1.48
USP3-211ENST00000559257 IGHV3-16A0A0C4DH30 117 aa5.77□□□□□ -1.49
USP3-211ENST00000559257 KLK9Q2XQG4 91 aa5.77□□□□□ -1.49
USP3-211ENST00000559257 DEFB108BQ8NET1 73 aa5.77□□□□□ -1.49
USP3-211ENST00000559257 LINC00208Q96KT6 92 aa5.77□□□□□ -1.49
USP3-211ENST00000559257 ARRDC1-AS1Q9H2J1 176 aa5.77□□□□□ -1.49
USP3-211ENST00000559257 SDK1Q7Z5N4 2213 aa5.77□□□□□ -1.49
USP3-211ENST00000559257 CACNA1GO43497 2377 aa5.77□□□□□ -1.49
USP3-211ENST00000559257 K7EQD1 137 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 IGHV1-8P0DP01 117 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 IGHV4-38-2P0DP08 117 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 NPBQ8NG41 125 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 SZT2Q5T011 3432 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 CDH23Q9H251 3354 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 DNAH14Q0VDD8 3507 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 IGLV4-60A0A075B6I1 120 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 A0A1W2PNU3 283 aaPredicted RBP5.76□□□□□ -1.49
USP3-211ENST00000559257 IGLV1-47P01700 117 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 PLA2G2CQ5R387 149 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 LINC00467Q9BRT7 94 aa5.76□□□□□ -1.49
USP3-211ENST00000559257 A0A0A0MQY5 61 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 IGHV3OR16-9A0A0B4J2B5 98 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 LINC00158P58513 81 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 LINC00575Q6W349 94 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 LINC01006Q8NI28 216 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 COX7B2Q8TF08 81 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 REV3LO60673 3130 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 RANBP2P49792 3224 aaKnown RBP5.75□□□□□ -1.49
USP3-211ENST00000559257 C6orf99Q4VX62 202 aa5.75□□□□□ -1.49
USP3-211ENST00000559257 IGHV3-23P01764 117 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 NANOS2P60321 138 aaKnown RBP5.74□□□□□ -1.49
USP3-211ENST00000559257 PRAC1Q96KF2 57 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 CEP290O15078 2479 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 EYSQ5T1H1 3165 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 TRGV2A0A075B6R0 118 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 ETDCA0A1B0GVM5 59 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 IGHV3-53P01767 116 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 PRR3P79522 188 aaKnown RBP5.74□□□□□ -1.49
USP3-211ENST00000559257 PRB3Q04118 309 aaPredicted RBP5.74□□□□□ -1.49
USP3-211ENST00000559257 KRTAP3-3Q9BYR6 98 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 KRTAP3-2Q9BYR7 98 aa5.74□□□□□ -1.49
USP3-211ENST00000559257 USP34Q70CQ2 3546 aa5.73□□□□□ -1.49
USP3-211ENST00000559257 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.73□□□□□ -1.49
USP3-211ENST00000559257 IGHV3-66A0A0C4DH42 116 aa5.73□□□□□ -1.49
USP3-211ENST00000559257 IGHV1-46P01743 117 aa5.73□□□□□ -1.49
USP3-211ENST00000559257 RNASE1P07998 156 aaKnown RBP5.73□□□□□ -1.49
USP3-211ENST00000559257 FAM30AQ9NZY2 134 aa5.73□□□□□ -1.49
USP3-211ENST00000559257 ZNF706Q9Y5V0 76 aaPredicted RBP5.73□□□□□ -1.49
USP3-211ENST00000559257 UNC80Q8N2C7 3258 aa5.73□□□□□ -1.49
USP3-211ENST00000559257 IGHV3OR16-8A0A075B7F1 116 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 IGHV3-73A0A0B4J1V6 119 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 NDUFA4O00483 81 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 LINC00612Q8N6U2 182 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 PLAC8Q9NZF1 115 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 XIRP2A4UGR9 3374 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 PRB1P04280 392 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 COX7BP24311 80 aa5.72□□□□□ -1.49
USP3-211ENST00000559257 IGHV3-35A0A0C4DH35 117 aa5.71□□□□□ -1.49
USP3-211ENST00000559257 ATP6V0E1O15342 81 aa5.71□□□□□ -1.49
USP3-211ENST00000559257 FBXL19-AS1Q494R0 122 aa5.71□□□□□ -1.49
USP3-211ENST00000559257 SMIM29Q86T20 159 aa5.71□□□□□ -1.49
USP3-211ENST00000559257 KAAG1Q9UBP8 84 aa5.71□□□□□ -1.49
USP3-211ENST00000559257 LINC01558Q9Y6Z2 57 aa5.71□□□□□ -1.49
USP3-211ENST00000559257 VCANP13611 3396 aa5.7□□□□□ -1.5
USP3-211ENST00000559257 IGHV6-1A0A0B4J1U7 121 aa5.7□□□□□ -1.5
USP3-211ENST00000559257 ATP1A1-AS1Q5TC04 95 aa5.7□□□□□ -1.5
USP3-211ENST00000559257 RETNLBQ9BQ08 111 aa5.7□□□□□ -1.5
USP3-211ENST00000559257 FSHBP01225 129 aa5.7□□□□□ -1.5
USP3-211ENST00000559257 BSPH1Q075Z2 132 aa5.7□□□□□ -1.5
USP3-211ENST00000559257 Q8N9L7 120 aa5.7□□□□□ -1.5
USP3-211ENST00000559257 TNRC18O15417 2968 aaPredicted RBP5.69□□□□□ -1.5
USP3-211ENST00000559257 X6R8D5 127 aa5.69□□□□□ -1.5
USP3-211ENST00000559257 PRR4Q16378 134 aa5.68□□□□□ -1.5
USP3-211ENST00000559257 IGHV3OR16-13A0A075B7E8 117 aa5.68□□□□□ -1.5
USP3-211ENST00000559257 IGHV3-74A0A0B4J1X5 117 aa5.68□□□□□ -1.5
USP3-211ENST00000559257 CNBPP62633 177 aaKnown RBP5.68□□□□□ -1.5
USP3-211ENST00000559257 KCNQ1DNQ9H478 68 aa5.68□□□□□ -1.5
USP3-211ENST00000559257 IGHV4-59P01825 116 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms