RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SLC25A29Q8N8R3 303 aa7.84□□□□□ -1.15
SHMT2-216ENST00000554975 GEMIN7Q9H840 131 aaKnown RBP7.84□□□□□ -1.15
SHMT2-216ENST00000554975 CSDC2Q9Y534 153 aaKnown RBP7.84□□□□□ -1.15
SHMT2-216ENST00000554975 IGHV3OR16-12A0A075B7B8 117 aa7.83□□□□□ -1.16
SHMT2-216ENST00000554975 A0A0J9YXV3 536 aa7.83□□□□□ -1.16
SHMT2-216ENST00000554975 K7ERJ3 54 aa7.83□□□□□ -1.16
SHMT2-216ENST00000554975 TIRAPP58753 221 aa7.83□□□□□ -1.16
SHMT2-216ENST00000554975 OCIAD2Q56VL3 154 aa7.83□□□□□ -1.16
SHMT2-216ENST00000554975 COPS9Q8WXC6 57 aa7.83□□□□□ -1.16
SHMT2-216ENST00000554975 APLNQ9ULZ1 77 aa7.83□□□□□ -1.16
SHMT2-216ENST00000554975 IGHV1-58A0A0C4DH39 117 aa7.82□□□□□ -1.16
SHMT2-216ENST00000554975 TRBV6-4A0A1B0GX49 114 aa7.82□□□□□ -1.16
SHMT2-216ENST00000554975 J3QR89 54 aa7.82□□□□□ -1.16
SHMT2-216ENST00000554975 HERVK_113P63121 156 aa7.82□□□□□ -1.16
SHMT2-216ENST00000554975 Q6ZUT4 128 aa7.82□□□□□ -1.16
SHMT2-216ENST00000554975 LRP1BQ9NZR2 4599 aa7.82□□□□□ -1.16
SHMT2-216ENST00000554975 IGLV5-45A0A087WSX0 123 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 A0A0B4J2C4 111 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 F8W1H4 67 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 TIMM17BO60830 172 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 IGHV3-30P01768 117 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 IGHV3-30-5P0DP03 117 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 TSPEAR-AS2P59090 65 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 FAM19A3Q7Z5A8 133 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 GTSF1LQ9H1H1 148 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 PGPEP1Q9NXJ5 209 aa7.81□□□□□ -1.16
SHMT2-216ENST00000554975 APOBP04114 4563 aaKnown RBP7.8□□□□□ -1.16
SHMT2-216ENST00000554975 TRBV20-1A0A075B6N2 111 aa7.8□□□□□ -1.16
SHMT2-216ENST00000554975 TRGV2A0A075B6R0 118 aa7.8□□□□□ -1.16
SHMT2-216ENST00000554975 UBE2L6O14933 153 aa7.8□□□□□ -1.16
SHMT2-216ENST00000554975 IGHV3-30-3P0DP02 117 aa7.8□□□□□ -1.16
SHMT2-216ENST00000554975 UBE2D3P61077 147 aa7.8□□□□□ -1.16
SHMT2-216ENST00000554975 UBE2D2P62837 147 aa7.8□□□□□ -1.16
SHMT2-216ENST00000554975 TMEM101Q96IK0 257 aa7.8□□□□□ -1.16
SHMT2-216ENST00000554975 NAA38Q9BRA0 125 aaKnown RBP7.8□□□□□ -1.16
SHMT2-216ENST00000554975 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.79□□□□□ -1.16
SHMT2-216ENST00000554975 A0A0J9YXY3 114 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 IGKV2-29A2NJV5 120 aaPredicted RBP7.79□□□□□ -1.16
SHMT2-216ENST00000554975 SMIM9A6NGZ8 99 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 DEFB4AO15263 64 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 Q6ZSN1 163 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 Q6ZTI0 123 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 C10orf126Q8N4M7 172 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 C11orf45Q8TAV5 145 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 VSIG2Q96IQ7 327 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 OPRPNQ99935 248 aaPredicted RBP7.79□□□□□ -1.16
SHMT2-216ENST00000554975 TMEM243Q9BU79 118 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 SPANXDQ9BXN6 97 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 SPANXCQ9NY87 97 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 NDUFA12Q9UI09 145 aa7.79□□□□□ -1.16
SHMT2-216ENST00000554975 DMBT1Q9UGM3 2413 aaPredicted RBP7.78□□□□□ -1.16
SHMT2-216ENST00000554975 TRGV4A0A0C4DH28 118 aa7.78□□□□□ -1.16
SHMT2-216ENST00000554975 IFITM1P13164 125 aa7.78□□□□□ -1.16
SHMT2-216ENST00000554975 NOP10Q9NPE3 64 aaKnown RBP7.78□□□□□ -1.16
SHMT2-216ENST00000554975 PRO1854Q9UHT4 67 aa7.78□□□□□ -1.16
SHMT2-216ENST00000554975 M0R2N4 97 aa7.77□□□□□ -1.17
SHMT2-216ENST00000554975 APOMO95445 188 aa7.77□□□□□ -1.17
SHMT2-216ENST00000554975 TSPAN13O95857 204 aa7.77□□□□□ -1.17
SHMT2-216ENST00000554975 GIG44P09565 113 aaPredicted RBP7.77□□□□□ -1.17
SHMT2-216ENST00000554975 RBX1P62877 108 aa7.77□□□□□ -1.17
SHMT2-216ENST00000554975 CIRBPQ14011 172 aaKnown RBP7.77□□□□□ -1.17
SHMT2-216ENST00000554975 DEFB104AQ8WTQ1 72 aa7.77□□□□□ -1.17
SHMT2-216ENST00000554975 VPS25Q9BRG1 176 aa7.77□□□□□ -1.17
SHMT2-216ENST00000554975 IGHV3-38A0A0C4DH36 116 aa7.76□□□□□ -1.17
SHMT2-216ENST00000554975 NDUFA1O15239 70 aa7.76□□□□□ -1.17
SHMT2-216ENST00000554975 CSNK1G2-AS1Q8NCQ2 148 aa7.76□□□□□ -1.17
SHMT2-216ENST00000554975 C11orf68Q9H3H3 251 aaKnown RBP7.76□□□□□ -1.17
SHMT2-216ENST00000554975 PPDPFQ9H3Y8 114 aa7.76□□□□□ -1.17
SHMT2-216ENST00000554975 IGHV4-28A0A0C4DH34 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 PLAC8L1A1L4L8 177 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE12JA6NER3 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE7O76087 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE12FP0CL80 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE12GP0CL81 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE12IP0CL82 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 MIFP14174 115 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 HERV-K104P63124 156 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE4Q13068 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE5Q13069 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 MIAQ16674 131 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 GAGE13Q4V321 117 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 SFTA2Q6UW10 78 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 ATP6V0E2Q8NHE4 81 aa7.75□□□□□ -1.17
SHMT2-216ENST00000554975 IGHV3-64A0A075B6Q5 118 aa7.74□□□□□ -1.17
SHMT2-216ENST00000554975 IGLV5-39A0A0G2JS06 123 aa7.74□□□□□ -1.17
SHMT2-216ENST00000554975 PRM2P04554 102 aa7.74□□□□□ -1.17
SHMT2-216ENST00000554975 LINC00612Q8N6U2 182 aa7.74□□□□□ -1.17
SHMT2-216ENST00000554975 Q8NAQ8 132 aa7.74□□□□□ -1.17
SHMT2-216ENST00000554975 FAM104AQ969W3 186 aa7.74□□□□□ -1.17
SHMT2-216ENST00000554975 X6R8D5 127 aa7.74□□□□□ -1.17
SHMT2-216ENST00000554975 LOC107984156A0A0G2JMH3 177 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 A4D1N5 150 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 LYRM9A8MSI8 78 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 SPINK8P0C7L1 97 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 LINC00694P0DN24 101 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 RNF151Q2KHN1 245 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 ARL17AQ8IVW1 177 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 ERG28Q9UKR5 140 aa7.73□□□□□ -1.17
SHMT2-216ENST00000554975 DNAH5Q8TE73 4624 aa7.72□□□□□ -1.17
SHMT2-216ENST00000554975 TRAV8-3A0A0A6YYJ7 113 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms