RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 A0A1W2PNN7 141 aa11.37□□□□□ -0.59
SHMT2-206ENST00000553529 IFITM10A6NMD0 228 aa11.37□□□□□ -0.59
SHMT2-206ENST00000553529 PRR3P79522 188 aaKnown RBP11.37□□□□□ -0.59
SHMT2-206ENST00000553529 SPAG11BQ08648 103 aa11.37□□□□□ -0.59
SHMT2-206ENST00000553529 C10orf25Q5T742 122 aa11.37□□□□□ -0.59
SHMT2-206ENST00000553529 CAMK2N2Q96S95 79 aa11.37□□□□□ -0.59
SHMT2-206ENST00000553529 IGLV4-3A0A075B6K6 122 aa11.36□□□□□ -0.59
SHMT2-206ENST00000553529 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.36□□□□□ -0.59
SHMT2-206ENST00000553529 APOC3P02656 99 aa11.36□□□□□ -0.59
SHMT2-206ENST00000553529 PTTG1IPP53801 180 aa11.36□□□□□ -0.59
SHMT2-206ENST00000553529 TMEM18Q96B42 140 aa11.36□□□□□ -0.59
SHMT2-206ENST00000553529 SPANXA1Q9NS26 97 aa11.36□□□□□ -0.59
SHMT2-206ENST00000553529 IGHV3OR16-9A0A0B4J2B5 98 aa11.35□□□□□ -0.59
SHMT2-206ENST00000553529 PPBPP02775 128 aa11.35□□□□□ -0.59
SHMT2-206ENST00000553529 MT-ND4LP03901 98 aa11.35□□□□□ -0.59
SHMT2-206ENST00000553529 PNRC1Q12796 327 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-206ENST00000553529 KIAA1644Q3SXP7 199 aa11.35□□□□□ -0.59
SHMT2-206ENST00000553529 ORAOV1Q8WV07 137 aa11.35□□□□□ -0.59
SHMT2-206ENST00000553529 ANAPC16Q96DE5 110 aa11.35□□□□□ -0.59
SHMT2-206ENST00000553529 MRPS36P82909 103 aaKnown RBP11.34□□□□□ -0.59
SHMT2-206ENST00000553529 SVBPQ8N300 66 aa11.34□□□□□ -0.59
SHMT2-206ENST00000553529 RPL18AQ02543 176 aaKnown RBP11.33□□□□□ -0.6
SHMT2-206ENST00000553529 LINC00173Q6ZV60 143 aa11.33□□□□□ -0.6
SHMT2-206ENST00000553529 C7orf33Q8WU49 177 aa11.33□□□□□ -0.6
SHMT2-206ENST00000553529 RAB5AP20339 215 aa11.32□□□□□ -0.6
SHMT2-206ENST00000553529 LINC00242Q5T6M2 205 aa11.32□□□□□ -0.6
SHMT2-206ENST00000553529 MAP1LC3AQ9H492 121 aa11.32□□□□□ -0.6
SHMT2-206ENST00000553529 CARHSP1Q9Y2V2 147 aaKnown RBP11.32□□□□□ -0.6
SHMT2-206ENST00000553529 LOC107984640A0A0U1RRK4 108 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 FAM168BA1KXE4 195 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 PRSS47A8MTI9 375 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 SNAPINO95295 136 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 APOMO95445 188 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 SMAGPQ0VAQ4 97 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 UNQ6190/PRO20217Q6UXQ8 127 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 IMMP2LQ96T52 175 aa11.31□□□□□ -0.6
SHMT2-206ENST00000553529 TNXBP22105 4242 aa11.3□□□□□ -0.6
SHMT2-206ENST00000553529 IFI27P40305 119 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-206ENST00000553529 Q8N8P6 123 aa11.3□□□□□ -0.6
SHMT2-206ENST00000553529 C10orf91Q5T1B1 145 aa11.29□□□□□ -0.6
SHMT2-206ENST00000553529 C2orf82Q6UX34 121 aa11.29□□□□□ -0.6
SHMT2-206ENST00000553529 C2orf66Q6UXQ4 117 aa11.29□□□□□ -0.6
SHMT2-206ENST00000553529 PHF5AQ7RTV0 110 aaKnown RBP11.29□□□□□ -0.6
SHMT2-206ENST00000553529 KRTAP11-1Q8IUC1 163 aa11.29□□□□□ -0.6
SHMT2-206ENST00000553529 C2orf48Q96LS8 159 aa11.29□□□□□ -0.6
SHMT2-206ENST00000553529 C6orf48Q9UBA6 75 aa11.29□□□□□ -0.6
SHMT2-206ENST00000553529 KIAA0087Q14695 138 aa11.28□□□□□ -0.6
SHMT2-206ENST00000553529 C9orf116Q5BN46 136 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-206ENST00000553529 TMEM141Q96I45 108 aa11.28□□□□□ -0.6
SHMT2-206ENST00000553529 UBE2D1P51668 147 aa11.27□□□□□ -0.61
SHMT2-206ENST00000553529 OR10D4PQ8NGN7 298 aa11.27□□□□□ -0.61
SHMT2-206ENST00000553529 PYGO1Q9Y3Y4 419 aa11.27□□□□□ -0.61
SHMT2-206ENST00000553529 Q6ZRP5 223 aa11.26□□□□□ -0.61
SHMT2-206ENST00000553529 KRTAP7-1Q8IUC3 87 aa11.26□□□□□ -0.61
SHMT2-206ENST00000553529 CTDSP1Q9GZU7 261 aa11.26□□□□□ -0.61
SHMT2-206ENST00000553529 IGIPA6NJ69 53 aa11.25□□□□□ -0.61
SHMT2-206ENST00000553529 RHEBQ15382 184 aa11.25□□□□□ -0.61
SHMT2-206ENST00000553529 RPS10P5Q9NQ39 176 aa11.25□□□□□ -0.61
SHMT2-206ENST00000553529 LINC00474Q9P2X8 69 aa11.25□□□□□ -0.61
SHMT2-206ENST00000553529 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
SHMT2-206ENST00000553529 LAMTOR2Q9Y2Q5 125 aa11.25□□□□□ -0.61
SHMT2-206ENST00000553529 A0A087WZ39 114 aa11.24□□□□□ -0.61
SHMT2-206ENST00000553529 TGIF2-C20orf24A0A0A6YYL0 155 aa11.24□□□□□ -0.61
SHMT2-206ENST00000553529 TEX43Q6ZNM6 134 aa11.24□□□□□ -0.61
SHMT2-206ENST00000553529 AMELXQ99217 191 aa11.24□□□□□ -0.61
SHMT2-206ENST00000553529 MRPL35Q9NZE8 188 aaKnown RBP11.24□□□□□ -0.61
SHMT2-206ENST00000553529 GAGE2EQ4V326 116 aa11.23□□□□□ -0.61
SHMT2-206ENST00000553529 GAGE2DQ9UEU5 116 aa11.23□□□□□ -0.61
SHMT2-206ENST00000553529 NDUFA1O15239 70 aa11.22□□□□□ -0.61
SHMT2-206ENST00000553529 FAM19A5Q7Z5A7 132 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-206ENST00000553529 PSORS1C2Q9UIG4 136 aa11.22□□□□□ -0.61
SHMT2-206ENST00000553529 SRSF9Q13242 221 aaKnown RBP eCLIP11.21□□□□□ -0.61
SHMT2-206ENST00000553529 SERTAD4-AS1Q5TG53 156 aa11.21□□□□□ -0.61
SHMT2-206ENST00000553529 PLA2G2DQ9UNK4 145 aa11.21□□□□□ -0.61
SHMT2-206ENST00000553529 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
SHMT2-206ENST00000553529 ORMDL2Q53FV1 153 aa11.2□□□□□ -0.62
SHMT2-206ENST00000553529 VCX2Q9H322 139 aa11.19□□□□□ -0.62
SHMT2-206ENST00000553529 PKIGQ9Y2B9 76 aa11.19□□□□□ -0.62
SHMT2-206ENST00000553529 UBR4Q5T4S7 5183 aa11.19□□□□□ -0.62
SHMT2-206ENST00000553529 S100PP25815 95 aa11.18□□□□□ -0.62
SHMT2-206ENST00000553529 C9orf129Q5T035 196 aaKnown RBP11.18□□□□□ -0.62
SHMT2-206ENST00000553529 LINC01600Q96MT4 127 aa11.18□□□□□ -0.62
SHMT2-206ENST00000553529 C2orf88Q9BSF0 95 aa11.18□□□□□ -0.62
SHMT2-206ENST00000553529 NXT2Q9NPJ8 142 aaKnown RBP11.18□□□□□ -0.62
SHMT2-206ENST00000553529 TOMM7Q9P0U1 55 aa11.18□□□□□ -0.62
SHMT2-206ENST00000553529 CDKN2A-AS1Q9UH64 79 aa11.18□□□□□ -0.62
SHMT2-206ENST00000553529 Q6ZN92 141 aa11.17□□□□□ -0.62
SHMT2-206ENST00000553529 TOMM6Q96B49 74 aa11.17□□□□□ -0.62
SHMT2-206ENST00000553529 ALKBH7Q9BT30 221 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-206ENST00000553529 C1orf137Q5JT78 98 aa11.16□□□□□ -0.62
SHMT2-206ENST00000553529 SPINK6Q6UWN8 80 aa11.16□□□□□ -0.62
SHMT2-206ENST00000553529 LINC00469Q8N7U9 141 aa11.16□□□□□ -0.62
SHMT2-206ENST00000553529 SMCO4Q9NRQ5 59 aa11.16□□□□□ -0.62
SHMT2-206ENST00000553529 TLX1NBP0CAT3 122 aa11.15□□□□□ -0.62
SHMT2-206ENST00000553529 MT-ND6P03923 174 aa11.14□□□□□ -0.63
SHMT2-206ENST00000553529 FAM19A3Q7Z5A8 133 aa11.14□□□□□ -0.63
SHMT2-206ENST00000553529 MRPL18Q9H0U6 180 aaKnown RBP11.14□□□□□ -0.63
SHMT2-206ENST00000553529 SCO1O75880 301 aa11.13□□□□□ -0.63
SHMT2-206ENST00000553529 SCGB3A1Q96QR1 104 aa11.13□□□□□ -0.63
SHMT2-206ENST00000553529 TIMM17AQ99595 171 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms