RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 IGHV3-30-5P0DP03 117 aa18.29■□□□□ 0.52
CCDC88C-205ENST00000553403 H3BUT2 72 aa18.28■□□□□ 0.52
CCDC88C-205ENST00000553403 K7ERJ3 54 aa18.28■□□□□ 0.52
CCDC88C-205ENST00000553403 TMEM238C9JI98 176 aa18.28■□□□□ 0.52
CCDC88C-205ENST00000553403 SH2D6Q7Z4S9 175 aa18.28■□□□□ 0.52
CCDC88C-205ENST00000553403 RETNQ9HD89 108 aa18.28■□□□□ 0.52
CCDC88C-205ENST00000553403 MRPL23Q16540 153 aaKnown RBP18.27■□□□□ 0.52
CCDC88C-205ENST00000553403 A0A096LPF7 62 aa18.26■□□□□ 0.51
CCDC88C-205ENST00000553403 SMIM1B2RUZ4 78 aa18.26■□□□□ 0.51
CCDC88C-205ENST00000553403 C11orf68Q9H3H3 251 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-205ENST00000553403 HTN3P15516 51 aa18.25■□□□□ 0.51
CCDC88C-205ENST00000553403 TMEM262E9PQX1 116 aa18.24■□□□□ 0.51
CCDC88C-205ENST00000553403 NDUFA1O15239 70 aa18.24■□□□□ 0.51
CCDC88C-205ENST00000553403 RBX1P62877 108 aa18.24■□□□□ 0.51
CCDC88C-205ENST00000553403 ICOSQ9Y6W8 199 aa18.24■□□□□ 0.51
CCDC88C-205ENST00000553403 CCL25O15444 150 aa18.23■□□□□ 0.51
CCDC88C-205ENST00000553403 A0A1W2PPM0 123 aa18.22■□□□□ 0.51
CCDC88C-205ENST00000553403 TIMM17BO60830 172 aa18.22■□□□□ 0.51
CCDC88C-205ENST00000553403 LITAFQ99732 161 aa18.22■□□□□ 0.51
CCDC88C-205ENST00000553403 NAA38Q9BRA0 125 aaKnown RBP18.21■□□□□ 0.51
CCDC88C-205ENST00000553403 IGLL5B9A064 214 aa18.2■□□□□ 0.5
CCDC88C-205ENST00000553403 SPANXDQ9BXN6 97 aa18.2■□□□□ 0.5
CCDC88C-205ENST00000553403 SPANXCQ9NY87 97 aa18.2■□□□□ 0.5
CCDC88C-205ENST00000553403 CMYA5Q8N3K9 4069 aa18.2■□□□□ 0.5
CCDC88C-205ENST00000553403 IGKV3OR2-268A0A0C4DH90 116 aa18.18■□□□□ 0.5
CCDC88C-205ENST00000553403 LINC00959A0A1B0GUT2 108 aa18.18■□□□□ 0.5
CCDC88C-205ENST00000553403 FABP2P12104 132 aa18.18■□□□□ 0.5
CCDC88C-205ENST00000553403 H3BNG1 76 aa18.17■□□□□ 0.5
CCDC88C-205ENST00000553403 RPL24P83731 157 aaKnown RBP18.17■□□□□ 0.5
CCDC88C-205ENST00000553403 GTF2H5Q6ZYL4 71 aa18.17■□□□□ 0.5
CCDC88C-205ENST00000553403 NBEAL2Q6ZNJ1 2754 aa18.17■□□□□ 0.5
CCDC88C-205ENST00000553403 IGHV3OR16-9A0A0B4J2B5 98 aa18.16■□□□□ 0.5
CCDC88C-205ENST00000553403 GAGE10A6NGK3 116 aa18.16■□□□□ 0.5
CCDC88C-205ENST00000553403 LELP1Q5T871 98 aa18.16■□□□□ 0.5
CCDC88C-205ENST00000553403 MUSTN1Q8IVN3 82 aa18.16■□□□□ 0.5
CCDC88C-205ENST00000553403 MEGF8Q7Z7M0 2845 aa18.16■□□□□ 0.5
CCDC88C-205ENST00000553403 K7EP34 96 aa18.15■□□□□ 0.5
CCDC88C-205ENST00000553403 SS18Q15532 418 aa18.15■□□□□ 0.5
CCDC88C-205ENST00000553403 Q9H8V8 135 aa18.15■□□□□ 0.5
CCDC88C-205ENST00000553403 A0A087WZ39 114 aa18.13■□□□□ 0.49
CCDC88C-205ENST00000553403 MIAQ16674 131 aa18.13■□□□□ 0.49
CCDC88C-205ENST00000553403 CFC1BP0CG36 223 aa18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 CFC1P0CG37 223 aa18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 HERV-K104P63124 156 aa18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 ADAMTSL4-AS1Q5T5F5 129 aa18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 ZNF625Q96I27 306 aaPredicted RBP18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 A4D1N5 150 aa18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 APOMO95445 188 aa18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 CIRBPQ14011 172 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 SPCS1Q9Y6A9 102 aa18.12■□□□□ 0.49
CCDC88C-205ENST00000553403 DNAH3Q8TD57 4116 aa18.1■□□□□ 0.49
CCDC88C-205ENST00000553403 TRAV16A0A0A6YYK6 109 aaPredicted RBP18.09■□□□□ 0.49
CCDC88C-205ENST00000553403 A0A0J9YWU9 116 aa18.09■□□□□ 0.49
CCDC88C-205ENST00000553403 IFITM1P13164 125 aa18.09■□□□□ 0.49
CCDC88C-205ENST00000553403 Q6ZTC4 211 aa18.09■□□□□ 0.49
CCDC88C-205ENST00000553403 LINC01561Q8N1V8 128 aa18.09■□□□□ 0.49
CCDC88C-205ENST00000553403 COX7B2Q8TF08 81 aa18.09■□□□□ 0.49
CCDC88C-205ENST00000553403 PGPEP1Q9NXJ5 209 aa18.09■□□□□ 0.49
CCDC88C-205ENST00000553403 A0A0B4J2C4 111 aa18.08■□□□□ 0.48
CCDC88C-205ENST00000553403 PRSS2P07478 247 aa18.07■□□□□ 0.48
CCDC88C-205ENST00000553403 KPRPQ5T749 579 aaPredicted RBP18.07■□□□□ 0.48
CCDC88C-205ENST00000553403 SPATA25Q9BR10 227 aa18.07■□□□□ 0.48
CCDC88C-205ENST00000553403 LYPD5Q6UWN5 251 aa18.06■□□□□ 0.48
CCDC88C-205ENST00000553403 LINC00269Q8N2A0 174 aa18.06■□□□□ 0.48
CCDC88C-205ENST00000553403 C5orf38Q86SI9 138 aa18.06■□□□□ 0.48
CCDC88C-205ENST00000553403 PRO1854Q9UHT4 67 aa18.06■□□□□ 0.48
CCDC88C-205ENST00000553403 K7EIL1 84 aa18.05■□□□□ 0.48
CCDC88C-205ENST00000553403 TSPAN13O95857 204 aa18.05■□□□□ 0.48
CCDC88C-205ENST00000553403 ANGP03950 147 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-205ENST00000553403 C11orf45Q8TAV5 145 aa18.04■□□□□ 0.48
CCDC88C-205ENST00000553403 XCL1P47992 114 aa18.03■□□□□ 0.48
CCDC88C-205ENST00000553403 REG3AQ06141 175 aa18.03■□□□□ 0.48
CCDC88C-205ENST00000553403 CLPSL2Q6UWE3 100 aa18.03■□□□□ 0.48
CCDC88C-205ENST00000553403 TM2D3Q9BRN9 247 aa18.03■□□□□ 0.48
CCDC88C-205ENST00000553403 PRB2P02812 416 aaPredicted RBP18.02■□□□□ 0.47
CCDC88C-205ENST00000553403 EIF4EBP3O60516 100 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 NANOS2P60321 138 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 MEIG1Q5JSS6 88 aa18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 SFTA2Q6UW10 78 aa18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 CD164L2Q6UWJ8 174 aa18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 Q8N3U1 123 aa18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 COPS9Q8WXC6 57 aa18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 TOMM7Q9P0U1 55 aa18.01■□□□□ 0.47
CCDC88C-205ENST00000553403 NOTCH1P46531 2555 aa18■□□□□ 0.47
CCDC88C-205ENST00000553403 CHCHD10Q8WYQ3 142 aaPredicted RBP17.99■□□□□ 0.47
CCDC88C-205ENST00000553403 DEFB131BA0A096LNP1 70 aa17.98■□□□□ 0.47
CCDC88C-205ENST00000553403 IGHV3-33P01772 117 aa17.98■□□□□ 0.47
CCDC88C-205ENST00000553403 PPDPFQ9H3Y8 114 aa17.98■□□□□ 0.47
CCDC88C-205ENST00000553403 LYRM7Q5U5X0 104 aa17.97■□□□□ 0.47
CCDC88C-205ENST00000553403 LINC00308Q8TCZ7 52 aa17.97■□□□□ 0.47
CCDC88C-205ENST00000553403 DAND5Q8N907 189 aa17.96■□□□□ 0.47
CCDC88C-205ENST00000553403 NPC2P61916 151 aa17.96■□□□□ 0.47
CCDC88C-205ENST00000553403 DEFB121Q5J5C9 76 aa17.96■□□□□ 0.47
CCDC88C-205ENST00000553403 PRR34Q9NV39 138 aa17.96■□□□□ 0.47
CCDC88C-205ENST00000553403 ERG28Q9UKR5 140 aa17.96■□□□□ 0.47
CCDC88C-205ENST00000553403 Q8IZM0 81 aa17.95■□□□□ 0.46
CCDC88C-205ENST00000553403 COX7A2LO14548 114 aa17.94■□□□□ 0.46
CCDC88C-205ENST00000553403 A0A0U1RRA0 63 aa17.92■□□□□ 0.46
CCDC88C-205ENST00000553403 C6orf226Q5I0X4 101 aa17.92■□□□□ 0.46
CCDC88C-205ENST00000553403 LOC107984156A0A0G2JMH3 177 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms