RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 LST1O00453 97 aa5.33□□□□□ -1.56
LIMA1-213ENST00000552720 RPL35AP18077 110 aaKnown RBP5.33□□□□□ -1.56
LIMA1-213ENST00000552720 HERVK_113P63121 156 aa5.33□□□□□ -1.56
LIMA1-213ENST00000552720 YAE1D1Q9NRH1 226 aa5.33□□□□□ -1.56
LIMA1-213ENST00000552720 TMEM262E9PQX1 116 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 F5H768 121 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 TIMM17BO60830 172 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE7O76087 117 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 COX6CP09669 75 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE12FP0CL80 117 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE12GP0CL81 117 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE12IP0CL82 117 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 PRIMA1Q86XR5 153 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 RNF183Q96D59 192 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 CITED1Q99966 193 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 CDC42SE2Q9NRR3 84 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 IGKV3OR2-268A0A0C4DH90 116 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 PLAC8L1A1L4L8 177 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 IFITM1P13164 125 aa5.32□□□□□ -1.56
LIMA1-213ENST00000552720 TRAV8-4A0A0B4J246 113 aa5.31□□□□□ -1.56
LIMA1-213ENST00000552720 CIRBPQ14011 172 aaKnown RBP5.31□□□□□ -1.56
LIMA1-213ENST00000552720 MEIG1Q5JSS6 88 aa5.31□□□□□ -1.56
LIMA1-213ENST00000552720 LINC01600Q96MT4 127 aa5.31□□□□□ -1.56
LIMA1-213ENST00000552720 TENM1Q9UKZ4 2725 aa5.31□□□□□ -1.56
LIMA1-213ENST00000552720 LRRC75A-AS1Q8N1F1 130 aa5.31□□□□□ -1.56
LIMA1-213ENST00000552720 TEX29Q8N6K0 151 aa5.31□□□□□ -1.56
LIMA1-213ENST00000552720 TRGV2A0A075B6R0 118 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 TRAV25A0A0B4J276 109 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 TRBV10-1A0A0K0K1A3 114 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 DAZ2Q13117 558 aaKnown RBP5.3□□□□□ -1.56
LIMA1-213ENST00000552720 TTC32Q5I0X7 151 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 DAZ4Q86SG3 579 aaKnown RBP5.3□□□□□ -1.56
LIMA1-213ENST00000552720 DAZ3Q9NR90 486 aaKnown RBP5.3□□□□□ -1.56
LIMA1-213ENST00000552720 HELZ2Q9BYK8 2649 aaKnown RBP5.3□□□□□ -1.56
LIMA1-213ENST00000552720 H3BT86 120 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 SNCGO76070 127 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE6Q13070 117 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 FAM19A3Q7Z5A8 133 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 C15orf53Q8NAA6 179 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 ANAPC13Q9BS18 74 aa5.3□□□□□ -1.56
LIMA1-213ENST00000552720 CSDC2Q9Y534 153 aaKnown RBP5.3□□□□□ -1.56
LIMA1-213ENST00000552720 UBE2L6O14933 153 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 NHLRC4P0CG21 123 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-213ENST00000552720 LINC01006Q8NI28 216 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 TMEM243Q9BU79 118 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 IGLV4-60A0A075B6I1 120 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE2BQ13066 116 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE2EQ4V326 116 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 TMEM86BQ8N661 226 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 FAM218AQ96MZ4 157 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 TOMM7Q9P0U1 55 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 GAGE2DQ9UEU5 116 aa5.29□□□□□ -1.56
LIMA1-213ENST00000552720 C19orf73Q9NVV2 129 aa5.28□□□□□ -1.56
LIMA1-213ENST00000552720 TRGV4A0A0C4DH28 118 aa5.28□□□□□ -1.56
LIMA1-213ENST00000552720 COX7A2LO14548 114 aa5.28□□□□□ -1.56
LIMA1-213ENST00000552720 SHISA2Q6UWI4 295 aa5.28□□□□□ -1.56
LIMA1-213ENST00000552720 CSNK1G2-AS1Q8NCQ2 148 aa5.28□□□□□ -1.56
LIMA1-213ENST00000552720 UNC79Q9P2D8 2635 aa5.27□□□□□ -1.57
LIMA1-213ENST00000552720 FASNP49327 2511 aaKnown RBP5.27□□□□□ -1.57
LIMA1-213ENST00000552720 C16orf74Q96GX8 76 aa5.27□□□□□ -1.57
LIMA1-213ENST00000552720 KRTAP1-1Q07627 177 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 MIR7-3HGQ8N6C7 128 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 HIVEP2P31629 2446 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 IGLV1-51P01701 117 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 NDUFV3P56181 108 aaKnown RBP5.26□□□□□ -1.57
LIMA1-213ENST00000552720 FHL2Q14192 279 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 LINC00337Q8N6G1 96 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 Q9HAA7 133 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 C22orf24Q9Y442 160 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 OTOGQ6ZRI0 2925 aa5.26□□□□□ -1.57
LIMA1-213ENST00000552720 IGKV2-28A0A075B6P5 120 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 TRBV6-4A0A1B0GX49 114 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 IGKV2D-28P01615 120 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 DEFB121Q5J5C9 76 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 C5orf38Q86SI9 138 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 COX7B2Q8TF08 81 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 CHCHD5Q9BSY4 110 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 C1orf43Q9BWL3 253 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 C11orf68Q9H3H3 251 aaKnown RBP5.25□□□□□ -1.57
LIMA1-213ENST00000552720 DEFB130BP0DP73 79 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 DEFB130AP0DP74 79 aa5.25□□□□□ -1.57
LIMA1-213ENST00000552720 TRBV6-8A0A0A6YYG3 113 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 CCDC179H3BU77 68 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 HERV-K104P63124 156 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 OVOL2Q9BRP0 275 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 A0A096LPF7 62 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 IGHV3OR16-9A0A0B4J2B5 98 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 B5MCH6 92 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 PFN2P35080 140 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 LINC00158P58513 81 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 CLPSL2Q6UWE3 100 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 SMCR5Q8TEV8 140 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 SND1-IT1Q9HBX3 110 aa5.24□□□□□ -1.57
LIMA1-213ENST00000552720 BAALC-AS2P0C853 105 aa5.23□□□□□ -1.57
LIMA1-213ENST00000552720 SS18L2Q9UHA2 77 aa5.23□□□□□ -1.57
LIMA1-213ENST00000552720 CCL18P55774 89 aa5.23□□□□□ -1.57
LIMA1-213ENST00000552720 C9orf129Q5T035 196 aaKnown RBP5.23□□□□□ -1.57
LIMA1-213ENST00000552720 HIVEP1P15822 2718 aa5.23□□□□□ -1.57
LIMA1-213ENST00000552720 HECTD1Q9ULT8 2610 aa5.23□□□□□ -1.57
LIMA1-213ENST00000552720 A0A087WYN8 130 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms