RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 TMEM243Q9BU79 118 aa4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 TIMM21Q9BVV7 248 aa4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 UQCR10Q9UDW1 63 aa4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 IGHV3-38A0A0C4DH36 116 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 IGIPA6NJ69 53 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 F5H768 121 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 GYPEP15421 78 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 RPL39P62891 51 aaKnown RBP4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 SEC11AP67812 179 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 ODF1Q14990 250 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 MRPL23Q16540 153 aaKnown RBP4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 C1orf134Q5TEV5 83 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 PRO1933Q9H354 126 aa4.94□□□□□ -1.62
DEPDC4-208ENST00000549341 NACAE9PAV3 2078 aa4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 TRAV26-1A0A087WT03 109 aa4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 INAFM2P0DMQ5 153 aa4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 ZNF25P17030 456 aaPredicted RBP4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 MRPS36P82909 103 aaKnown RBP4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 OR5A1Q8NGJ0 315 aa4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 MIEN1Q9BRT3 115 aa4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 CHCHD7Q9BUK0 85 aa4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 MRPL35Q9NZE8 188 aaKnown RBP4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 CSDC2Q9Y534 153 aaKnown RBP4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 ICOSQ9Y6W8 199 aa4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 FLG2Q5D862 2391 aaPredicted RBP4.93□□□□□ -1.62
DEPDC4-208ENST00000549341 IGLV4-3A0A075B6K6 122 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 DEFB131BA0A096LNP1 70 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 TRBV6-8A0A0A6YYG3 113 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 hDV102S1A0JD36 115 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 IGKV2-29A2NJV5 120 aaPredicted RBP4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 EPM2AB3EWF7 344 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 H3BNG1 76 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 HTN3P15516 51 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 DDTP30046 118 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 HNRNPA3P51991 378 aaKnown RBP4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 SLC25A34Q6PIV7 304 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 MRPL52Q86TS9 123 aaKnown RBP4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 CHCHD5Q9BSY4 110 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 CST9LQ9H4G1 147 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 UBE2D4Q9Y2X8 147 aa4.92□□□□□ -1.62
DEPDC4-208ENST00000549341 IGLC3P0DOY3 106 aa4.91□□□□□ -1.62
DEPDC4-208ENST00000549341 FGF6P10767 208 aa4.91□□□□□ -1.62
DEPDC4-208ENST00000549341 ZC2HC1BQ5TFG8 222 aa4.91□□□□□ -1.62
DEPDC4-208ENST00000549341 Q6ZR54 194 aa4.91□□□□□ -1.62
DEPDC4-208ENST00000549341 DEFB104AQ8WTQ1 72 aa4.91□□□□□ -1.62
DEPDC4-208ENST00000549341 GEMIN7Q9H840 131 aaKnown RBP4.91□□□□□ -1.62
DEPDC4-208ENST00000549341 CELA1Q9UNI1 258 aa4.91□□□□□ -1.62
DEPDC4-208ENST00000549341 A0A0J9YY99 117 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 LOC100131303A0A0U1RQF7 123 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 C11orf86A6NJI1 115 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 TMEM262E9PQX1 116 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 H3BRM9 83 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 LINC00694P0DN24 101 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 COX8AP10176 69 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 NMUP48645 174 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 C12orf74Q32Q52 190 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 TMEM170BQ5T4T1 132 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 NFE4Q86UQ8 179 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 AMELXQ99217 191 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 Q9UF83 564 aa4.9□□□□□ -1.63
DEPDC4-208ENST00000549341 TRAV8-6A0A0B4J262 113 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 TINCRA0A1B0GVN0 87 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 SIVA1O15304 175 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 CCL25O15444 150 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 DLEU1O43261 78 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 HERVK_113P63121 156 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 GAGE6Q13070 117 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 NTM-AS1Q6ZSK4 140 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 STPG4Q8N801 248 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 C14orf144Q96I85 54 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 CHAC1Q9BUX1 264 aa4.89□□□□□ -1.63
DEPDC4-208ENST00000549341 E9PLD3 99 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 TIRAPP58753 221 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 MAJINQ3KP22 176 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 LELP1Q5T871 98 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 Q6ZUT4 128 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 C15orf53Q8NAA6 179 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 PLEKHB2Q96CS7 222 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 VSIG2Q96IQ7 327 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 CDC42SE2Q9NRR3 84 aa4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 MRPS16Q9Y3D3 137 aaKnown RBP4.88□□□□□ -1.63
DEPDC4-208ENST00000549341 IGLV4-69A0A075B6H9 119 aa4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 A0A1B0GUV1 79 aa4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 M0R143 59 aa4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 LGALS3P17931 250 aaKnown RBP4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 LBHQ53QV2 105 aaPredicted RBP4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 ANKRD39Q53RE8 183 aa4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 Q5VSD8 79 aa4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 OPRPNQ99935 248 aaPredicted RBP4.87□□□□□ -1.63
DEPDC4-208ENST00000549341 A0A096LPF7 62 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 A0A0J9YXV3 536 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 LINC00587B1AMM8 73 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 LEPROTO15243 131 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 ZNF22P17026 224 aaPredicted RBP4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 UBE2D1P51668 147 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 SS18Q15532 418 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 BOD1L2Q8IYS8 172 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 C6orf223Q8N319 242 aa4.86□□□□□ -1.63
DEPDC4-208ENST00000549341 LINC00469Q8N7U9 141 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms