RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 CELA1Q9UNI1 258 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 IGHV1-58A0A0C4DH39 117 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 CFC1BP0CG36 223 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 CFC1P0CG37 223 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 ETDBQ3ZM63 59 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 TMEM101Q96IK0 257 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 CMYA5Q8N3K9 4069 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 IGHV4-28A0A0C4DH34 117 aa7.78□□□□□ -1.16
CUX1-212ENST00000547394 TSPAN13O95857 204 aa7.78□□□□□ -1.16
CUX1-212ENST00000547394 SBSPONQ8IVN8 264 aa7.78□□□□□ -1.16
CUX1-212ENST00000547394 CDC42SE2Q9NRR3 84 aa7.78□□□□□ -1.16
CUX1-212ENST00000547394 TRBV6-4A0A1B0GX49 114 aa7.77□□□□□ -1.16
CUX1-212ENST00000547394 SMAGPQ0VAQ4 97 aa7.77□□□□□ -1.16
CUX1-212ENST00000547394 RETNQ9HD89 108 aa7.77□□□□□ -1.16
CUX1-212ENST00000547394 TMEM262E9PQX1 116 aa7.77□□□□□ -1.17
CUX1-212ENST00000547394 KRTAP24-1Q3LI83 254 aa7.77□□□□□ -1.17
CUX1-212ENST00000547394 SPANXB1Q9NS25 103 aaPredicted RBP7.77□□□□□ -1.17
CUX1-212ENST00000547394 IGHV4-30-4P0DP06 118 aa7.77□□□□□ -1.17
CUX1-212ENST00000547394 F8W1H4 67 aa7.76□□□□□ -1.17
CUX1-212ENST00000547394 INSL3P51460 131 aa7.76□□□□□ -1.17
CUX1-212ENST00000547394 LITAFQ99732 161 aa7.76□□□□□ -1.17
CUX1-212ENST00000547394 C11orf68Q9H3H3 251 aaKnown RBP7.76□□□□□ -1.17
CUX1-212ENST00000547394 Q9H8V8 135 aa7.76□□□□□ -1.17
CUX1-212ENST00000547394 TOMM7Q9P0U1 55 aa7.76□□□□□ -1.17
CUX1-212ENST00000547394 TRBV6-8A0A0A6YYG3 113 aa7.75□□□□□ -1.17
CUX1-212ENST00000547394 A0A1B0GWB2 263 aa7.75□□□□□ -1.17
CUX1-212ENST00000547394 GAGE12HA6NDE8 117 aa7.75□□□□□ -1.17
CUX1-212ENST00000547394 SIGMAR1Q99720 223 aa7.75□□□□□ -1.17
CUX1-212ENST00000547394 PSMB2P49721 201 aa7.74□□□□□ -1.17
CUX1-212ENST00000547394 SMIM1B2RUZ4 78 aa7.74□□□□□ -1.17
CUX1-212ENST00000547394 PRB2P02812 416 aaPredicted RBP7.74□□□□□ -1.17
CUX1-212ENST00000547394 CRYBA4P53673 196 aa7.74□□□□□ -1.17
CUX1-212ENST00000547394 KRTAP10-11P60412 298 aa7.74□□□□□ -1.17
CUX1-212ENST00000547394 C5orf38Q86SI9 138 aa7.74□□□□□ -1.17
CUX1-212ENST00000547394 ATP6V0E2Q8NHE4 81 aa7.73□□□□□ -1.17
CUX1-212ENST00000547394 TRAV26-1A0A087WT03 109 aa7.73□□□□□ -1.17
CUX1-212ENST00000547394 J3QR89 54 aa7.73□□□□□ -1.17
CUX1-212ENST00000547394 PAX4O43316 350 aa7.73□□□□□ -1.17
CUX1-212ENST00000547394 F5H768 121 aa7.73□□□□□ -1.17
CUX1-212ENST00000547394 HERVK_113P63121 156 aa7.73□□□□□ -1.17
CUX1-212ENST00000547394 DAD1P61803 113 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 Q1RN00 199 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 ZFAND6Q6FIF0 208 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 KIR2DL5BQ8NHK3 375 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 PRO0461Q9UI25 63 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 IGLV10-54A0A075B6I4 117 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 XCL1P47992 114 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 TIRAPP58753 221 aa7.72□□□□□ -1.17
CUX1-212ENST00000547394 SCGB1C2P0DMR2 95 aa7.71□□□□□ -1.17
CUX1-212ENST00000547394 APOC4P55056 127 aa7.71□□□□□ -1.17
CUX1-212ENST00000547394 PRIMA1Q86XR5 153 aa7.71□□□□□ -1.17
CUX1-212ENST00000547394 PRO1854Q9UHT4 67 aa7.71□□□□□ -1.17
CUX1-212ENST00000547394 IGLV5-45A0A087WSX0 123 aa7.71□□□□□ -1.18
CUX1-212ENST00000547394 Q8NAQ8 132 aa7.71□□□□□ -1.18
CUX1-212ENST00000547394 PRO0255Q9UI72 69 aa7.71□□□□□ -1.18
CUX1-212ENST00000547394 LINC00612Q8N6U2 182 aa7.7□□□□□ -1.18
CUX1-212ENST00000547394 C3orf56Q8N813 242 aa7.7□□□□□ -1.18
CUX1-212ENST00000547394 WFDC9Q8NEX5 89 aa7.7□□□□□ -1.18
CUX1-212ENST00000547394 TCL1BO95988 128 aa7.7□□□□□ -1.18
CUX1-212ENST00000547394 MEIG1Q5JSS6 88 aa7.7□□□□□ -1.18
CUX1-212ENST00000547394 CSDC2Q9Y534 153 aaKnown RBP7.69□□□□□ -1.18
CUX1-212ENST00000547394 IGLV5-39A0A0G2JS06 123 aa7.69□□□□□ -1.18
CUX1-212ENST00000547394 SPATA25Q9BR10 227 aa7.69□□□□□ -1.18
CUX1-212ENST00000547394 IGHV3-33P01772 117 aa7.69□□□□□ -1.18
CUX1-212ENST00000547394 NDUFA1O15239 70 aa7.68□□□□□ -1.18
CUX1-212ENST00000547394 MIAQ16674 131 aa7.68□□□□□ -1.18
CUX1-212ENST00000547394 SOSTDC1Q6X4U4 206 aa7.68□□□□□ -1.18
CUX1-212ENST00000547394 SMIM9A6NGZ8 99 aa7.68□□□□□ -1.18
CUX1-212ENST00000547394 SMCPP49901 116 aaPredicted RBP7.68□□□□□ -1.18
CUX1-212ENST00000547394 LINC00269Q8N2A0 174 aa7.67□□□□□ -1.18
CUX1-212ENST00000547394 ERG28Q9UKR5 140 aa7.67□□□□□ -1.18
CUX1-212ENST00000547394 LYRM9A8MSI8 78 aa7.66□□□□□ -1.18
CUX1-212ENST00000547394 RNF183Q96D59 192 aa7.66□□□□□ -1.18
CUX1-212ENST00000547394 LINC00959A0A1B0GUT2 108 aa7.66□□□□□ -1.18
CUX1-212ENST00000547394 SCGB1A1P11684 91 aa7.66□□□□□ -1.18
CUX1-212ENST00000547394 PFN2P35080 140 aa7.66□□□□□ -1.18
CUX1-212ENST00000547394 FOXI1Q12951 378 aa7.66□□□□□ -1.18
CUX1-212ENST00000547394 ATP5G1P05496 136 aa7.65□□□□□ -1.18
CUX1-212ENST00000547394 C2orf82Q6UX34 121 aa7.65□□□□□ -1.18
CUX1-212ENST00000547394 IGHV3OR16-9A0A0B4J2B5 98 aa7.65□□□□□ -1.18
CUX1-212ENST00000547394 TRIAP1O43715 76 aa7.65□□□□□ -1.18
CUX1-212ENST00000547394 ANGP03950 147 aaKnown RBP7.65□□□□□ -1.18
CUX1-212ENST00000547394 SPART-AS1P0CW21 52 aa7.65□□□□□ -1.19
CUX1-212ENST00000547394 LINC00308Q8TCZ7 52 aa7.65□□□□□ -1.19
CUX1-212ENST00000547394 COX7B2Q8TF08 81 aa7.65□□□□□ -1.19
CUX1-212ENST00000547394 LINC00526Q96FQ7 95 aa7.65□□□□□ -1.19
CUX1-212ENST00000547394 RPL13AP40429 203 aaKnown RBP7.64□□□□□ -1.19
CUX1-212ENST00000547394 CLEC2BQ92478 149 aa7.64□□□□□ -1.19
CUX1-212ENST00000547394 SPANXDQ9BXN6 97 aa7.64□□□□□ -1.19
CUX1-212ENST00000547394 SPANXCQ9NY87 97 aa7.64□□□□□ -1.19
CUX1-212ENST00000547394 STAB2Q8WWQ8 2551 aa7.64□□□□□ -1.19
CUX1-212ENST00000547394 A0A1B0GV72 72 aa7.63□□□□□ -1.19
CUX1-212ENST00000547394 MIFP14174 115 aa7.63□□□□□ -1.19
CUX1-212ENST00000547394 A0A0B4J2C4 111 aa7.63□□□□□ -1.19
CUX1-212ENST00000547394 CIRBPQ14011 172 aaKnown RBP7.63□□□□□ -1.19
CUX1-212ENST00000547394 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.62□□□□□ -1.19
CUX1-212ENST00000547394 CKS1BP61024 79 aa7.62□□□□□ -1.19
CUX1-212ENST00000547394 FAM19A3Q7Z5A8 133 aa7.62□□□□□ -1.19
CUX1-212ENST00000547394 MIR7-3HGQ8N6C7 128 aa7.62□□□□□ -1.19
CUX1-212ENST00000547394 CDIP1Q9H305 208 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms