RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SFTA2Q6UW10 78 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 CDKN2A-AS1Q9UH64 79 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 ZNF469Q96JG9 3925 aaPredicted RBP6.98□□□□□ -1.29
SS18-205ENST00000542420 TRAV8-3A0A0A6YYJ7 113 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 TRBV30A0A0K0K1B3 111 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 SNCGO76070 127 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 TTC32Q5I0X7 151 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 WFDC10AQ9H1F0 79 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 TRBV6-8A0A0A6YYG3 113 aa6.97□□□□□ -1.29
SS18-205ENST00000542420 LOC107984156A0A0G2JMH3 177 aa6.97□□□□□ -1.29
SS18-205ENST00000542420 C5orf47Q569G3 176 aa6.97□□□□□ -1.29
SS18-205ENST00000542420 ARL17AQ8IVW1 177 aa6.97□□□□□ -1.29
SS18-205ENST00000542420 LINC01561Q8N1V8 128 aa6.97□□□□□ -1.29
SS18-205ENST00000542420 MAP1AP78559 2803 aaPredicted RBP6.96□□□□□ -1.29
SS18-205ENST00000542420 IGHV3-64A0A075B6Q5 118 aa6.96□□□□□ -1.29
SS18-205ENST00000542420 SMIM1B2RUZ4 78 aa6.96□□□□□ -1.29
SS18-205ENST00000542420 APOC4P55056 127 aa6.96□□□□□ -1.29
SS18-205ENST00000542420 TMEM126AQ9H061 195 aa6.96□□□□□ -1.29
SS18-205ENST00000542420 CCDC168Q8NDH2 2452 aa6.96□□□□□ -1.29
SS18-205ENST00000542420 TENM4Q6N022 2769 aa6.96□□□□□ -1.3
SS18-205ENST00000542420 F5H768 121 aa6.96□□□□□ -1.3
SS18-205ENST00000542420 RNASE13Q5GAN3 156 aaKnown RBP6.96□□□□□ -1.3
SS18-205ENST00000542420 HIVEP2P31629 2446 aa6.95□□□□□ -1.3
SS18-205ENST00000542420 X6R8D5 127 aa6.95□□□□□ -1.3
SS18-205ENST00000542420 SMR3AQ99954 134 aa6.95□□□□□ -1.3
SS18-205ENST00000542420 A0A1B0GUV1 79 aa6.94□□□□□ -1.3
SS18-205ENST00000542420 COX6A2Q02221 97 aa6.94□□□□□ -1.3
SS18-205ENST00000542420 WFDC9Q8NEX5 89 aa6.94□□□□□ -1.3
SS18-205ENST00000542420 ZNF625Q96I27 306 aaPredicted RBP6.94□□□□□ -1.3
SS18-205ENST00000542420 UNC79Q9P2D8 2635 aa6.94□□□□□ -1.3
SS18-205ENST00000542420 NBPF19A0A087WUL8 3843 aa6.94□□□□□ -1.3
SS18-205ENST00000542420 SLC25A20O43772 301 aa6.94□□□□□ -1.3
SS18-205ENST00000542420 EIF4EBP3O60516 100 aaPredicted RBP6.94□□□□□ -1.3
SS18-205ENST00000542420 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.94□□□□□ -1.3
SS18-205ENST00000542420 PRO0255Q9UI72 69 aa6.94□□□□□ -1.3
SS18-205ENST00000542420 CHD6Q8TD26 2715 aa6.93□□□□□ -1.3
SS18-205ENST00000542420 ATXN8Q156A1 80 aa6.93□□□□□ -1.3
SS18-205ENST00000542420 C3orf56Q8N813 242 aa6.93□□□□□ -1.3
SS18-205ENST00000542420 INAFM1C9JVW0 142 aa6.93□□□□□ -1.3
SS18-205ENST00000542420 COX6CP09669 75 aa6.93□□□□□ -1.3
SS18-205ENST00000542420 ADAMTSL4-AS1Q5T5F5 129 aa6.93□□□□□ -1.3
SS18-205ENST00000542420 C15orf53Q8NAA6 179 aa6.93□□□□□ -1.3
SS18-205ENST00000542420 SCGB1C2P0DMR2 95 aa6.92□□□□□ -1.3
SS18-205ENST00000542420 MIFP14174 115 aa6.92□□□□□ -1.3
SS18-205ENST00000542420 RPL13AP40429 203 aaKnown RBP6.92□□□□□ -1.3
SS18-205ENST00000542420 Q9H8V8 135 aa6.92□□□□□ -1.3
SS18-205ENST00000542420 TRAV13-1A0A0B4J241 112 aa6.92□□□□□ -1.3
SS18-205ENST00000542420 ACANP16112 2415 aa6.91□□□□□ -1.3
SS18-205ENST00000542420 LOC107984640A0A0U1RRK4 108 aa6.91□□□□□ -1.3
SS18-205ENST00000542420 PRSS2P07478 247 aa6.91□□□□□ -1.3
SS18-205ENST00000542420 FAM222AQ5U5X8 452 aa6.91□□□□□ -1.3
SS18-205ENST00000542420 LINC00308Q8TCZ7 52 aa6.91□□□□□ -1.3
SS18-205ENST00000542420 A0A087WZ39 114 aa6.9□□□□□ -1.3
SS18-205ENST00000542420 LOC100131303A0A0U1RQF7 123 aa6.9□□□□□ -1.3
SS18-205ENST00000542420 C9JAW5 83 aa6.9□□□□□ -1.3
SS18-205ENST00000542420 NTN5Q8WTR8 489 aaPredicted RBP6.9□□□□□ -1.3
SS18-205ENST00000542420 CHCHD5Q9BSY4 110 aa6.9□□□□□ -1.3
SS18-205ENST00000542420 ICOSQ9Y6W8 199 aa6.9□□□□□ -1.3
SS18-205ENST00000542420 HELZ2Q9BYK8 2649 aaKnown RBP6.9□□□□□ -1.3
SS18-205ENST00000542420 IGHV3OR16-9A0A0B4J2B5 98 aa6.9□□□□□ -1.31
SS18-205ENST00000542420 COX7B2Q8TF08 81 aa6.9□□□□□ -1.31
SS18-205ENST00000542420 TRBV7-7A0A0K0K1E9 115 aa6.89□□□□□ -1.31
SS18-205ENST00000542420 MRPL23Q16540 153 aaKnown RBP6.89□□□□□ -1.31
SS18-205ENST00000542420 Q1RN00 199 aa6.89□□□□□ -1.31
SS18-205ENST00000542420 PRIMA1Q86XR5 153 aa6.89□□□□□ -1.31
SS18-205ENST00000542420 A8MZ25 164 aa6.89□□□□□ -1.31
SS18-205ENST00000542420 GYPEP15421 78 aa6.89□□□□□ -1.31
SS18-205ENST00000542420 TEX49A0A1B0GTD5 131 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 H3BT86 120 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 TRAV8-4A0A0B4J246 113 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 TRBV10-2A0A0K0K1G8 114 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 IBA57-AS1B1ANH7 110 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 TRIAP1O43715 76 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 DEFB130BP0DP73 79 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 DEFB130AP0DP74 79 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 LINC01620Q4KN68 170 aa6.88□□□□□ -1.31
SS18-205ENST00000542420 FAM19A5Q7Z5A7 132 aaPredicted RBP6.88□□□□□ -1.31
SS18-205ENST00000542420 ITPR2Q14571 2701 aa6.87□□□□□ -1.31
SS18-205ENST00000542420 PAX4O43316 350 aa6.87□□□□□ -1.31
SS18-205ENST00000542420 SS18Q15532 418 aa6.87□□□□□ -1.31
SS18-205ENST00000542420 IGLV4-60A0A075B6I1 120 aa6.87□□□□□ -1.31
SS18-205ENST00000542420 LINC00959A0A1B0GUT2 108 aa6.87□□□□□ -1.31
SS18-205ENST00000542420 A0A1B0GX51 115 aa6.87□□□□□ -1.31
SS18-205ENST00000542420 MTORP42345 2549 aa6.86□□□□□ -1.31
SS18-205ENST00000542420 TRAV13-2A0A0B4J235 113 aa6.86□□□□□ -1.31
SS18-205ENST00000542420 LST1O00453 97 aa6.86□□□□□ -1.31
SS18-205ENST00000542420 ATP5G1P05496 136 aa6.86□□□□□ -1.31
SS18-205ENST00000542420 Q8NAQ8 132 aa6.86□□□□□ -1.31
SS18-205ENST00000542420 DAD1P61803 113 aa6.85□□□□□ -1.31
SS18-205ENST00000542420 Q8IZM0 81 aa6.85□□□□□ -1.31
SS18-205ENST00000542420 MUC7Q8TAX7 377 aa6.85□□□□□ -1.31
SS18-205ENST00000542420 IGHV4-28A0A0C4DH34 117 aa6.85□□□□□ -1.31
SS18-205ENST00000542420 FAM240AA0A1B0GVK7 77 aa6.85□□□□□ -1.31
SS18-205ENST00000542420 SPART-AS1P0CW21 52 aa6.85□□□□□ -1.31
SS18-205ENST00000542420 CXCL5P42830 114 aa6.85□□□□□ -1.31
SS18-205ENST00000542420 FASNP49327 2511 aaKnown RBP6.85□□□□□ -1.31
SS18-205ENST00000542420 SETXQ7Z333 2677 aaKnown RBP6.85□□□□□ -1.31
SS18-205ENST00000542420 NOTCH3Q9UM47 2321 aa6.84□□□□□ -1.31
SS18-205ENST00000542420 H3BNG1 76 aa6.84□□□□□ -1.31
SS18-205ENST00000542420 J3KT08 172 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms