RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 OR5A1Q8NGJ0 315 aa9.6□□□□□ -0.87
RTN3-211ENST00000542238 TMEM101Q96IK0 257 aa9.6□□□□□ -0.87
RTN3-211ENST00000542238 CNFNQ9BYD5 112 aa9.6□□□□□ -0.87
RTN3-211ENST00000542238 IGHV1-58A0A0C4DH39 117 aa9.59□□□□□ -0.87
RTN3-211ENST00000542238 A8MWL6 223 aa9.59□□□□□ -0.87
RTN3-211ENST00000542238 ESDP10768 282 aa9.59□□□□□ -0.87
RTN3-211ENST00000542238 ZNF25P17030 456 aaPredicted RBP9.59□□□□□ -0.87
RTN3-211ENST00000542238 COX19Q49B96 90 aa9.59□□□□□ -0.87
RTN3-211ENST00000542238 ZNF664Q8N3J9 261 aa9.59□□□□□ -0.87
RTN3-211ENST00000542238 RPL39LQ96EH5 51 aaKnown RBP9.59□□□□□ -0.87
RTN3-211ENST00000542238 CARD19Q96LW7 228 aa9.59□□□□□ -0.87
RTN3-211ENST00000542238 SRSF9Q13242 221 aaKnown RBP eCLIP9.58□□□□□ -0.88
RTN3-211ENST00000542238 RNASE7Q9H1E1 156 aaKnown RBP9.58□□□□□ -0.88
RTN3-211ENST00000542238 SDHAF1A6NFY7 115 aa9.57□□□□□ -0.88
RTN3-211ENST00000542238 ZNF561-AS1K7EIQ3 104 aa9.57□□□□□ -0.88
RTN3-211ENST00000542238 CCL25O15444 150 aa9.57□□□□□ -0.88
RTN3-211ENST00000542238 MRPL52Q86TS9 123 aaKnown RBP9.57□□□□□ -0.88
RTN3-211ENST00000542238 TSKUQ8WUA8 353 aa9.57□□□□□ -0.88
RTN3-211ENST00000542238 LINC00526Q96FQ7 95 aa9.57□□□□□ -0.88
RTN3-211ENST00000542238 V9GYV3 84 aa9.57□□□□□ -0.88
RTN3-211ENST00000542238 LINC00959A0A1B0GUT2 108 aa9.56□□□□□ -0.88
RTN3-211ENST00000542238 I3L3M4 83 aa9.56□□□□□ -0.88
RTN3-211ENST00000542238 PMCHP20382 165 aa9.56□□□□□ -0.88
RTN3-211ENST00000542238 SYCNQ0VAF6 134 aa9.56□□□□□ -0.88
RTN3-211ENST00000542238 SS18Q15532 418 aa9.56□□□□□ -0.88
RTN3-211ENST00000542238 MT-ND6P03923 174 aa9.55□□□□□ -0.88
RTN3-211ENST00000542238 GAS8-AS1O95177 125 aa9.54□□□□□ -0.88
RTN3-211ENST00000542238 MRPL18Q9H0U6 180 aaKnown RBP9.54□□□□□ -0.88
RTN3-211ENST00000542238 LOC107984640A0A0U1RRK4 108 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 A0A1B0GV90 55 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 SMIM27A0A1W2PRY6 76 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 PTTG1IPP53801 180 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 GAGE2BQ13066 116 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 CD164L2Q6UWJ8 174 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 MRAP2Q96G30 205 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 GNB1LQ9BYB4 327 aa9.53□□□□□ -0.88
RTN3-211ENST00000542238 CAMPP49913 170 aa9.52□□□□□ -0.89
RTN3-211ENST00000542238 LINC00310P59036 64 aa9.52□□□□□ -0.89
RTN3-211ENST00000542238 TEX43Q6ZNM6 134 aa9.52□□□□□ -0.89
RTN3-211ENST00000542238 TRBV6-5A0A0K0K1A5 114 aa9.51□□□□□ -0.89
RTN3-211ENST00000542238 HIGD1CA8MV81 97 aa9.51□□□□□ -0.89
RTN3-211ENST00000542238 NUPR1O60356 82 aa9.51□□□□□ -0.89
RTN3-211ENST00000542238 SCGB1D1O95968 90 aa9.51□□□□□ -0.89
RTN3-211ENST00000542238 ST20Q9HBF5 79 aa9.51□□□□□ -0.89
RTN3-211ENST00000542238 NAT8BQ9UHF3 227 aa9.51□□□□□ -0.89
RTN3-211ENST00000542238 A0A1B0GW15 77 aa9.5□□□□□ -0.89
RTN3-211ENST00000542238 MALP21145 153 aa9.5□□□□□ -0.89
RTN3-211ENST00000542238 CDC42SE2Q9NRR3 84 aa9.5□□□□□ -0.89
RTN3-211ENST00000542238 IGLV4-69A0A075B6H9 119 aa9.49□□□□□ -0.89
RTN3-211ENST00000542238 SERF1AO75920 110 aa9.49□□□□□ -0.89
RTN3-211ENST00000542238 TSHBP01222 138 aa9.49□□□□□ -0.89
RTN3-211ENST00000542238 BORCS7Q96B45 105 aa9.49□□□□□ -0.89
RTN3-211ENST00000542238 A0A1B0GUT8 65 aa9.48□□□□□ -0.89
RTN3-211ENST00000542238 M0R143 59 aa9.48□□□□□ -0.89
RTN3-211ENST00000542238 RAB4AP20338 218 aa9.48□□□□□ -0.89
RTN3-211ENST00000542238 TMEM136Q6ZRR5 245 aa9.48□□□□□ -0.89
RTN3-211ENST00000542238 ATP5L2Q7Z4Y8 100 aa9.48□□□□□ -0.89
RTN3-211ENST00000542238 NUP35Q8NFH5 326 aa9.48□□□□□ -0.89
RTN3-211ENST00000542238 CAMK2N2Q96S95 79 aa9.48□□□□□ -0.89
RTN3-211ENST00000542238 A0A1W2PNN7 141 aa9.47□□□□□ -0.89
RTN3-211ENST00000542238 COX7A2LO14548 114 aa9.47□□□□□ -0.89
RTN3-211ENST00000542238 APOMO95445 188 aa9.47□□□□□ -0.89
RTN3-211ENST00000542238 BAGE3Q86Y29 109 aa9.47□□□□□ -0.89
RTN3-211ENST00000542238 PSORS1C2Q9UIG4 136 aa9.47□□□□□ -0.89
RTN3-211ENST00000542238 SMAGPQ0VAQ4 97 aa9.46□□□□□ -0.9
RTN3-211ENST00000542238 C9orf116Q5BN46 136 aaPredicted RBP9.46□□□□□ -0.9
RTN3-211ENST00000542238 C1orf137Q5JT78 98 aa9.46□□□□□ -0.9
RTN3-211ENST00000542238 SNHG12Q9BXW3 62 aa9.46□□□□□ -0.9
RTN3-211ENST00000542238 TRBV27A0A0K0K1C4 114 aa9.45□□□□□ -0.9
RTN3-211ENST00000542238 POLR2KP53803 58 aaKnown RBP9.45□□□□□ -0.9
RTN3-211ENST00000542238 RPL18AQ02543 176 aaKnown RBP9.45□□□□□ -0.9
RTN3-211ENST00000542238 RIGQ13278 110 aa9.45□□□□□ -0.9
RTN3-211ENST00000542238 C2orf48Q96LS8 159 aa9.45□□□□□ -0.9
RTN3-211ENST00000542238 MIEN1Q9BRT3 115 aa9.45□□□□□ -0.9
RTN3-211ENST00000542238 TMEM191AQ9H0A3 160 aa9.45□□□□□ -0.9
RTN3-211ENST00000542238 A0A1B0GXF2 115 aa9.44□□□□□ -0.9
RTN3-211ENST00000542238 TCAPO15273 167 aa9.44□□□□□ -0.9
RTN3-211ENST00000542238 FCER1GP30273 86 aa9.44□□□□□ -0.9
RTN3-211ENST00000542238 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.43□□□□□ -0.9
RTN3-211ENST00000542238 VAMP8Q9BV40 100 aa9.43□□□□□ -0.9
RTN3-211ENST00000542238 CSDC2Q9Y534 153 aaKnown RBP9.43□□□□□ -0.9
RTN3-211ENST00000542238 TRAV13-1A0A0B4J241 112 aa9.42□□□□□ -0.9
RTN3-211ENST00000542238 VCYO14598 125 aa9.42□□□□□ -0.9
RTN3-211ENST00000542238 PHF5AQ7RTV0 110 aaKnown RBP9.42□□□□□ -0.9
RTN3-211ENST00000542238 DIRC1Q969H9 104 aa9.42□□□□□ -0.9
RTN3-211ENST00000542238 HBBP68871 147 aa9.41□□□□□ -0.9
RTN3-211ENST00000542238 PPP1R17O96001 155 aa9.4□□□□□ -0.9
RTN3-211ENST00000542238 SPAG11BQ08648 103 aa9.4□□□□□ -0.9
RTN3-211ENST00000542238 RNF151Q2KHN1 245 aa9.4□□□□□ -0.9
RTN3-211ENST00000542238 RNASE13Q5GAN3 156 aaKnown RBP9.4□□□□□ -0.9
RTN3-211ENST00000542238 MRPL54Q6P161 138 aaKnown RBP9.4□□□□□ -0.9
RTN3-211ENST00000542238 C5orf38Q86SI9 138 aa9.4□□□□□ -0.9
RTN3-211ENST00000542238 PRR26Q8N8Z3 221 aa9.4□□□□□ -0.9
RTN3-211ENST00000542238 KIR2DL4Q99706 377 aa9.4□□□□□ -0.9
RTN3-211ENST00000542238 OPRPNQ99935 248 aaPredicted RBP9.4□□□□□ -0.9
RTN3-211ENST00000542238 UBE2D4Q9Y2X8 147 aa9.4□□□□□ -0.9
RTN3-211ENST00000542238 IGLV7-43P04211 117 aa9.39□□□□□ -0.91
RTN3-211ENST00000542238 AMN1Q8IY45 258 aa9.39□□□□□ -0.91
RTN3-211ENST00000542238 A0A087WZ39 114 aa9.38□□□□□ -0.91
RTN3-211ENST00000542238 KRTDAPP60985 99 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 517 ms