RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GAGE2DQ9UEU5 116 aa9.27□□□□□ -0.93
CLSTN3-213ENST00000541953 TLX1NBP0CAT3 122 aa9.26□□□□□ -0.93
CLSTN3-213ENST00000541953 KIAA0087Q14695 138 aa9.26□□□□□ -0.93
CLSTN3-213ENST00000541953 EIF5A2Q9GZV4 153 aaKnown RBP9.26□□□□□ -0.93
CLSTN3-213ENST00000541953 SMDT1Q9H4I9 107 aa9.26□□□□□ -0.93
CLSTN3-213ENST00000541953 NDUFA1O15239 70 aa9.25□□□□□ -0.93
CLSTN3-213ENST00000541953 TRBV24-1A0A075B6N3 115 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 C9JQL5 133 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 M0QXV9 152 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 PPP1R2P9O14990 202 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 TCAPO15273 167 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 TNFRSF6BO95407 300 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 NPYP01303 97 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 RPL23P62829 140 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 C9orf129Q5T035 196 aaKnown RBP9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 C2orf82Q6UX34 121 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 IMMP2LQ96T52 175 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 SMIM2Q9BVW6 85 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 FAT4Q6V0I7 4981 aa9.24□□□□□ -0.93
CLSTN3-213ENST00000541953 IFITM10A6NMD0 228 aa9.23□□□□□ -0.93
CLSTN3-213ENST00000541953 PPP1R17O96001 155 aa9.23□□□□□ -0.93
CLSTN3-213ENST00000541953 RPL32P62910 135 aaKnown RBP9.23□□□□□ -0.93
CLSTN3-213ENST00000541953 SMAGPQ0VAQ4 97 aa9.23□□□□□ -0.93
CLSTN3-213ENST00000541953 FAM74A3Q4VXF1 159 aa9.23□□□□□ -0.93
CLSTN3-213ENST00000541953 C20orf78Q9BR46 151 aa9.23□□□□□ -0.93
CLSTN3-213ENST00000541953 NAT8BQ9UHF3 227 aa9.23□□□□□ -0.93
CLSTN3-213ENST00000541953 IGLV1-50A0A075B6I6 118 aa9.22□□□□□ -0.93
CLSTN3-213ENST00000541953 D6R8Y8 96 aa9.22□□□□□ -0.93
CLSTN3-213ENST00000541953 MRPS36P82909 103 aaKnown RBP9.22□□□□□ -0.93
CLSTN3-213ENST00000541953 PRR4Q16378 134 aa9.22□□□□□ -0.93
CLSTN3-213ENST00000541953 SPANXA1Q9NS26 97 aa9.22□□□□□ -0.93
CLSTN3-213ENST00000541953 MUC17Q685J3 4493 aa9.21□□□□□ -0.93
CLSTN3-213ENST00000541953 SMIM27A0A1W2PRY6 76 aa9.21□□□□□ -0.94
CLSTN3-213ENST00000541953 CKS2P33552 79 aa9.21□□□□□ -0.94
CLSTN3-213ENST00000541953 ADIRFQ15847 76 aa9.21□□□□□ -0.94
CLSTN3-213ENST00000541953 TMEM18Q96B42 140 aa9.21□□□□□ -0.94
CLSTN3-213ENST00000541953 F8WDY8 70 aa9.2□□□□□ -0.94
CLSTN3-213ENST00000541953 HBBP68871 147 aa9.2□□□□□ -0.94
CLSTN3-213ENST00000541953 LINC00242Q5T6M2 205 aa9.2□□□□□ -0.94
CLSTN3-213ENST00000541953 ZC2HC1BQ5TFG8 222 aa9.2□□□□□ -0.94
CLSTN3-213ENST00000541953 MRPL54Q6P161 138 aaKnown RBP9.2□□□□□ -0.94
CLSTN3-213ENST00000541953 IGLV4-3A0A075B6K6 122 aa9.19□□□□□ -0.94
CLSTN3-213ENST00000541953 LINC00862A6NCI5 91 aa9.19□□□□□ -0.94
CLSTN3-213ENST00000541953 UBE2BP63146 152 aa9.19□□□□□ -0.94
CLSTN3-213ENST00000541953 SRSF3P84103 164 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-213ENST00000541953 hCG_2014768A0A024R1R8 64 aa9.18□□□□□ -0.94
CLSTN3-213ENST00000541953 A0A1B0GXF2 115 aa9.18□□□□□ -0.94
CLSTN3-213ENST00000541953 TMEM241Q24JQ0 296 aa9.18□□□□□ -0.94
CLSTN3-213ENST00000541953 KRTAP9-2Q9BYQ4 174 aa9.18□□□□□ -0.94
CLSTN3-213ENST00000541953 TGIF2-C20orf24A0A0A6YYL0 155 aa9.17□□□□□ -0.94
CLSTN3-213ENST00000541953 UBE2D1P51668 147 aa9.17□□□□□ -0.94
CLSTN3-213ENST00000541953 AKAP14Q86UN6 197 aa9.17□□□□□ -0.94
CLSTN3-213ENST00000541953 NDUFC2-KCTD14E9PQ53 114 aa9.16□□□□□ -0.94
CLSTN3-213ENST00000541953 LINC00469Q8N7U9 141 aa9.16□□□□□ -0.94
CLSTN3-213ENST00000541953 A0A087X002 238 aa9.15□□□□□ -0.94
CLSTN3-213ENST00000541953 TRBV30A0A0K0K1B3 111 aa9.15□□□□□ -0.94
CLSTN3-213ENST00000541953 TSPAN13O95857 204 aa9.15□□□□□ -0.94
CLSTN3-213ENST00000541953 LINC00173Q6ZV60 143 aa9.15□□□□□ -0.94
CLSTN3-213ENST00000541953 NAT8Q9UHE5 227 aa9.15□□□□□ -0.94
CLSTN3-213ENST00000541953 ZNF861PO60384 105 aa9.13□□□□□ -0.95
CLSTN3-213ENST00000541953 IFI27P40305 119 aaPredicted RBP9.13□□□□□ -0.95
CLSTN3-213ENST00000541953 A0A1B0GW15 77 aa9.12□□□□□ -0.95
CLSTN3-213ENST00000541953 RPL13AP40429 203 aaKnown RBP9.12□□□□□ -0.95
CLSTN3-213ENST00000541953 XAGE1AQ9HD64 81 aa9.12□□□□□ -0.95
CLSTN3-213ENST00000541953 PYGO1Q9Y3Y4 419 aa9.12□□□□□ -0.95
CLSTN3-213ENST00000541953 C22orf24Q9Y442 160 aa9.12□□□□□ -0.95
CLSTN3-213ENST00000541953 LCE2AQ5TA79 106 aaPredicted RBP9.11□□□□□ -0.95
CLSTN3-213ENST00000541953 TMEM141Q96I45 108 aa9.11□□□□□ -0.95
CLSTN3-213ENST00000541953 PACRGQ96M98 296 aaPredicted RBP9.11□□□□□ -0.95
CLSTN3-213ENST00000541953 LOC389332A0A1B0GUA5 103 aa9.1□□□□□ -0.95
CLSTN3-213ENST00000541953 ORMDL3Q8N138 153 aa9.1□□□□□ -0.95
CLSTN3-213ENST00000541953 PRELID3AQ96N28 172 aa9.1□□□□□ -0.95
CLSTN3-213ENST00000541953 CTDSP1Q9GZU7 261 aa9.1□□□□□ -0.95
CLSTN3-213ENST00000541953 TOMM7Q9P0U1 55 aa9.1□□□□□ -0.95
CLSTN3-213ENST00000541953 CARHSP1Q9Y2V2 147 aaKnown RBP9.1□□□□□ -0.95
CLSTN3-213ENST00000541953 F8W036 122 aa9.09□□□□□ -0.95
CLSTN3-213ENST00000541953 TMEM136Q6ZRR5 245 aa9.09□□□□□ -0.95
CLSTN3-213ENST00000541953 PPBPP02775 128 aa9.08□□□□□ -0.96
CLSTN3-213ENST00000541953 TEX43Q6ZNM6 134 aa9.08□□□□□ -0.96
CLSTN3-213ENST00000541953 AMELXQ99217 191 aa9.08□□□□□ -0.96
CLSTN3-213ENST00000541953 ANAPC11Q9NYG5 84 aa9.08□□□□□ -0.96
CLSTN3-213ENST00000541953 RAB5AP20339 215 aa9.07□□□□□ -0.96
CLSTN3-213ENST00000541953 LINC01561Q8N1V8 128 aa9.07□□□□□ -0.96
CLSTN3-213ENST00000541953 S100A8P05109 93 aa9.06□□□□□ -0.96
CLSTN3-213ENST00000541953 C2orf66Q6UXQ4 117 aa9.06□□□□□ -0.96
CLSTN3-213ENST00000541953 PRSS47A8MTI9 375 aa9.05□□□□□ -0.96
CLSTN3-213ENST00000541953 NUPR1O60356 82 aa9.05□□□□□ -0.96
CLSTN3-213ENST00000541953 KRTAP13-2Q52LG2 175 aa9.05□□□□□ -0.96
CLSTN3-213ENST00000541953 RETNLBQ9BQ08 111 aa9.05□□□□□ -0.96
CLSTN3-213ENST00000541953 CDKN2A-AS1Q9UH64 79 aa9.05□□□□□ -0.96
CLSTN3-213ENST00000541953 IGIPA6NJ69 53 aa9.04□□□□□ -0.96
CLSTN3-213ENST00000541953 Q6ZN92 141 aa9.04□□□□□ -0.96
CLSTN3-213ENST00000541953 Q8IZM0 81 aa9.04□□□□□ -0.96
CLSTN3-213ENST00000541953 C2orf88Q9BSF0 95 aa9.04□□□□□ -0.96
CLSTN3-213ENST00000541953 CYSLTR1Q9Y271 337 aa9.04□□□□□ -0.96
CLSTN3-213ENST00000541953 RPL37AP8A6NKH3 93 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 BCE1O60756 84 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 PRSS2P07478 247 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 CKS1BP61024 79 aa9.03□□□□□ -0.96
CLSTN3-213ENST00000541953 C6orf226Q5I0X4 101 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms