RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	BORCS8	Q96FH0	119 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	JPT1	Q9UK76	154 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	TPRKB	Q9Y3C4	175 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	UFC1	Q9Y3C8	167 aa		0.31	□□□□□ -2.36
PRKDC-210	ENST00000541488	ZNF727	A8MUV8	499 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	TMEM238	C9JI98	176 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	MT-ND6	P03923	174 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	FABP4	P15090	132 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	PDE6G	P18545	87 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	SERPINB1	P30740	379 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	GLRX	P35754	106 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	WFDC2	Q14508	124 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	VMA21	Q3ZAQ7	101 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	C3orf33	Q6P1S2	294 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	C10orf111	Q8N326	155 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	CDC26	Q8NHZ8	85 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	IL20	Q9NYY1	176 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	MED11	Q9P086	117 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488	LAMTOR2	Q9Y2Q5	125 aa		0.3	□□□□□ -2.36
PRKDC-210	ENST00000541488		A0A1B0GW64	132 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	TRDV1	A0A1B0GX56	115 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	IGHV3-30	P01768	117 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	IGHV3-30-5	P0DP03	117 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	SPINT3	P49223	89 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	ZNF137P	P52743	207 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	CCL18	P55774	89 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	FXYD4	P59646	89 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	MAX	P61244	160 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	ALX1	Q15699	326 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	TRIQK	Q629K1	86 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	DIRC1	Q969H9	104 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	HOPX	Q9BPY8	73 aa	Predicted RBP	0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	OTOR	Q9NRC9	128 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	GID8	Q9NWU2	228 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	NAT8B	Q9UHF3	227 aa		0.29	□□□□□ -2.36
PRKDC-210	ENST00000541488	C5orf58	C9J3I9	102 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	TRAC	P01848	142 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	PRH1	P02810	166 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	BCL2	P10415	239 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	FABP2	P12104	132 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	CRYBA4	P53673	196 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	NDUFA6	P56556	154 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	SPINK7	P58062	85 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	DCUN1D2	Q6PH85	259 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	SPINK6	Q6UWN8	80 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	CASC2	Q6XLA1	102 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	C5orf17	Q8NAS9	161 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	OR5AK2	Q8NH90	309 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	DYDC1	Q8WWB3	177 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	CARD19	Q96LW7	228 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	AP1S3	Q96PC3	154 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	ATPIF1	Q9UII2	106 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	HILPDA	Q9Y5L2	63 aa		0.28	□□□□□ -2.36
PRKDC-210	ENST00000541488	MAP1LC3B2	A6NCE7	125 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	FAM107A	O95990	144 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	SDC2	P34741	201 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	SRP9	P49458	86 aa	Known RBP	0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	UBE2D1	P51668	147 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	DEFA5	Q01523	94 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	CCSMST1	Q4G0I0	132 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	TMEM78	Q5T7P6	136 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	IZUMO2	Q6UXV1	221 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	DEFB106A	Q8N104	65 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	MORN4	Q8NDC4	146 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	DYNLRB2	Q8TF09	96 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	DPH3	Q96FX2	82 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	CCDC32	Q9BV29	185 aa		0.27	□□□□□ -2.37
PRKDC-210	ENST00000541488	SULT1C4	O75897	302 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	GYPA	P02724	150 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	MT1B	P07438	61 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	SAA1	P0DJI8	122 aa	Predicted RBP	0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	TPT1	P13693	172 aa	Known RBP	0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	KDELR1	P24390	212 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	CMPK1	P30085	196 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	NEDD8	Q15843	81 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488		Q86TA4	180 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	OR5H6	Q8NGV6	325 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	MYOZ3	Q8TDC0	251 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	PLAC4	Q8WY50	150 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	PRELID3A	Q96N28	172 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	CIB3	Q96Q77	187 aa	Predicted RBP	0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	LIMD2	Q9BT23	127 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	LPAR5	Q9H1C0	372 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	TAF9B	Q9HBM6	251 aa		0.26	□□□□□ -2.37
PRKDC-210	ENST00000541488	TRBV27	A0A0K0K1C4	114 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	C3orf85	A0A1B0GTC6	90 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488		G3V318	75 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	GABARAP	H6UMI1	98 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488		H7BYZ3	331 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	PITX3	O75364	302 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	MRPL33	O75394	65 aa	Known RBP	0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	GYPB	P06028	91 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	SCT	P09683	121 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	CAV3	P56539	151 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	DNAJB13	P59910	316 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	OR8B8	Q15620	311 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	STX12	Q86Y82	276 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	C5orf56	Q8N8D9	126 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	PCBD2	Q9H0N5	130 aa		0.25	□□□□□ -2.37
PRKDC-210	ENST00000541488	C19orf12	Q9NSK7	152 aa		0.25	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms