RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 MBD6Q96DN6 1003 aa7.94□□□□□ -1.14
CLIP1-209ENST00000537178 PYGO1Q9Y3Y4 419 aa7.94□□□□□ -1.14
CLIP1-209ENST00000537178 TNRC18O15417 2968 aaPredicted RBP7.93□□□□□ -1.14
CLIP1-209ENST00000537178 LINC01548A6NM66 108 aa7.93□□□□□ -1.14
CLIP1-209ENST00000537178 C3orf84H3BNL1 204 aa7.93□□□□□ -1.14
CLIP1-209ENST00000537178 Q6ZQY7 126 aa7.93□□□□□ -1.14
CLIP1-209ENST00000537178 CFAP126Q5VTH2 177 aa7.93□□□□□ -1.14
CLIP1-209ENST00000537178 LY6LH3BQJ8 138 aa7.93□□□□□ -1.14
CLIP1-209ENST00000537178 Q6YL49 198 aa7.93□□□□□ -1.14
CLIP1-209ENST00000537178 SPINK6Q6UWN8 80 aa7.92□□□□□ -1.14
CLIP1-209ENST00000537178 Q8N976 141 aa7.92□□□□□ -1.14
CLIP1-209ENST00000537178 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-209ENST00000537178 WFDC13Q8IUB5 93 aa7.92□□□□□ -1.14
CLIP1-209ENST00000537178 DSPP15924 2871 aaKnown RBP7.92□□□□□ -1.14
CLIP1-209ENST00000537178 M0R378 163 aa7.92□□□□□ -1.14
CLIP1-209ENST00000537178 LINC00310P59036 64 aa7.92□□□□□ -1.14
CLIP1-209ENST00000537178 TRBV27A0A0K0K1C4 114 aa7.92□□□□□ -1.14
CLIP1-209ENST00000537178 C9orf85Q96MD7 179 aa7.92□□□□□ -1.14
CLIP1-209ENST00000537178 TRBV6-5A0A0K0K1A5 114 aa7.91□□□□□ -1.14
CLIP1-209ENST00000537178 CD164L2Q6UWJ8 174 aa7.91□□□□□ -1.14
CLIP1-209ENST00000537178 MRPS12O15235 138 aaKnown RBP7.91□□□□□ -1.14
CLIP1-209ENST00000537178 NDUFA7O95182 113 aa7.91□□□□□ -1.14
CLIP1-209ENST00000537178 TRAV10A0A0B4J240 114 aa7.91□□□□□ -1.14
CLIP1-209ENST00000537178 MED12LQ86YW9 2145 aa7.91□□□□□ -1.14
CLIP1-209ENST00000537178 MAPKAPK5-AS1Q8N8E1 139 aa7.91□□□□□ -1.14
CLIP1-209ENST00000537178 FSTL3O95633 263 aa7.9□□□□□ -1.14
CLIP1-209ENST00000537178 SHISA2Q6UWI4 295 aa7.9□□□□□ -1.14
CLIP1-209ENST00000537178 A0A0J9YWU9 116 aa7.9□□□□□ -1.14
CLIP1-209ENST00000537178 DCANP1Q8TF63 244 aa7.9□□□□□ -1.14
CLIP1-209ENST00000537178 UBE2D1P51668 147 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 C20orf173Q96LM9 149 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 IGKV2-28A0A075B6P5 120 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 IGKV2D-28P01615 120 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 EBI3Q14213 229 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 IGLV4-69A0A075B6H9 119 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 EIF4EBP1Q13541 118 aaPredicted RBP7.89□□□□□ -1.15
CLIP1-209ENST00000537178 PPDPFQ9H3Y8 114 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 ZFAND3Q9H8U3 227 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 TECTAO75443 2155 aa7.89□□□□□ -1.15
CLIP1-209ENST00000537178 LST1O00453 97 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 MUC7Q8TAX7 377 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 UBE2D4Q9Y2X8 147 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 BRWD1-AS2P59051 145 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 Q8NA96 180 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 SNURFQ9Y675 71 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 U3KQK5 164 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 BSNQ9UPA5 3926 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 IGHV4-31P0DP07 118 aa7.88□□□□□ -1.15
CLIP1-209ENST00000537178 COX7CP15954 63 aa7.87□□□□□ -1.15
CLIP1-209ENST00000537178 BBC3Q96PG8 261 aaPredicted RBP7.87□□□□□ -1.15
CLIP1-209ENST00000537178 PRR4Q16378 134 aa7.87□□□□□ -1.15
CLIP1-209ENST00000537178 RNF185Q96GF1 192 aa7.87□□□□□ -1.15
CLIP1-209ENST00000537178 TET2Q6N021 2002 aaPredicted RBP7.87□□□□□ -1.15
CLIP1-209ENST00000537178 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.87□□□□□ -1.15
CLIP1-209ENST00000537178 Q6ZSV7 163 aa7.86□□□□□ -1.15
CLIP1-209ENST00000537178 LINC00482Q8N8I6 264 aa7.86□□□□□ -1.15
CLIP1-209ENST00000537178 LELP1Q5T871 98 aa7.86□□□□□ -1.15
CLIP1-209ENST00000537178 LOC107984640A0A0U1RRK4 108 aa7.86□□□□□ -1.15
CLIP1-209ENST00000537178 CRIP1P50238 77 aa7.86□□□□□ -1.15
CLIP1-209ENST00000537178 A0A1W2PNU3 283 aaPredicted RBP7.85□□□□□ -1.15
CLIP1-209ENST00000537178 MRPS36P82909 103 aaKnown RBP7.85□□□□□ -1.15
CLIP1-209ENST00000537178 ZNF73O43830 326 aaPredicted RBP7.85□□□□□ -1.15
CLIP1-209ENST00000537178 UBE2D3P61077 147 aa7.85□□□□□ -1.15
CLIP1-209ENST00000537178 PIEZO1Q92508 2521 aa7.85□□□□□ -1.15
CLIP1-209ENST00000537178 LINC00959A0A1B0GUT2 108 aa7.85□□□□□ -1.15
CLIP1-209ENST00000537178 TSHBP01222 138 aa7.85□□□□□ -1.15
CLIP1-209ENST00000537178 PROK1P58294 105 aa7.85□□□□□ -1.15
CLIP1-209ENST00000537178 COX17Q14061 63 aa7.85□□□□□ -1.15
CLIP1-209ENST00000537178 KPRPQ5T749 579 aaPredicted RBP7.85□□□□□ -1.15
CLIP1-209ENST00000537178 SMIM26A0A096LP01 95 aa7.84□□□□□ -1.15
CLIP1-209ENST00000537178 SMIM11BQ8TCY0 68 aa7.84□□□□□ -1.15
CLIP1-209ENST00000537178 DCHS1Q96JQ0 3298 aa7.83□□□□□ -1.16
CLIP1-209ENST00000537178 A8MZ25 164 aa7.83□□□□□ -1.16
CLIP1-209ENST00000537178 Q6JHZ5 121 aa7.83□□□□□ -1.16
CLIP1-209ENST00000537178 LINC00474Q9P2X8 69 aa7.83□□□□□ -1.16
CLIP1-209ENST00000537178 INAFM1C9JVW0 142 aa7.83□□□□□ -1.16
CLIP1-209ENST00000537178 MRGPRG-AS1Q2M3A8 158 aa7.83□□□□□ -1.16
CLIP1-209ENST00000537178 POLR2KP53803 58 aaKnown RBP7.82□□□□□ -1.16
CLIP1-209ENST00000537178 LINC00526Q96FQ7 95 aa7.82□□□□□ -1.16
CLIP1-209ENST00000537178 NRACQ8N912 160 aa7.82□□□□□ -1.16
CLIP1-209ENST00000537178 RNASE3P12724 160 aaKnown RBP7.82□□□□□ -1.16
CLIP1-209ENST00000537178 C1orf195Q5TG92 126 aa7.82□□□□□ -1.16
CLIP1-209ENST00000537178 HRCT1Q6UXD1 115 aa7.82□□□□□ -1.16
CLIP1-209ENST00000537178 NTM-AS1Q6ZSK4 140 aa7.82□□□□□ -1.16
CLIP1-209ENST00000537178 PSMG3-AS1Q96PY0 264 aa7.82□□□□□ -1.16
CLIP1-209ENST00000537178 KALRNO60229 2985 aa7.82□□□□□ -1.16
CLIP1-209ENST00000537178 IGLV2-18A0A075B6J9 118 aa7.81□□□□□ -1.16
CLIP1-209ENST00000537178 Q8IZM0 81 aa7.81□□□□□ -1.16
CLIP1-209ENST00000537178 C19orf84I3L1E1 186 aa7.81□□□□□ -1.16
CLIP1-209ENST00000537178 PLAC8L1A1L4L8 177 aa7.81□□□□□ -1.16
CLIP1-209ENST00000537178 C1orf229Q6ZS94 237 aaPredicted RBP7.81□□□□□ -1.16
CLIP1-209ENST00000537178 KLLNB2CW77 178 aa7.81□□□□□ -1.16
CLIP1-209ENST00000537178 IGLV9-49A0A0B4J1Y8 123 aa7.8□□□□□ -1.16
CLIP1-209ENST00000537178 DMXL2Q8TDJ6 3036 aa7.8□□□□□ -1.16
CLIP1-209ENST00000537178 UBE2D2P62837 147 aa7.8□□□□□ -1.16
CLIP1-209ENST00000537178 Q6ZVQ6 151 aa7.8□□□□□ -1.16
CLIP1-209ENST00000537178 RPL37AP8A6NKH3 93 aa7.8□□□□□ -1.16
CLIP1-209ENST00000537178 IGHV4-30-4P0DP06 118 aa7.8□□□□□ -1.16
CLIP1-209ENST00000537178 C2orf91Q6ZV80 131 aa7.8□□□□□ -1.16
CLIP1-209ENST00000537178 IGLV2-11P01706 119 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms