RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	URB1	O60287	2271 aa	Known RBP	0.29	□□□□□ -2.36
CD44-238	ENST00000534296	HUWE1	Q7Z6Z7	4374 aa	Known RBP	0.29	□□□□□ -2.36
CD44-238	ENST00000534296	FAM236A	A0A1B0GUQ0	79 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	FAM236B	A0A1B0GV22	79 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	FAM92A	A1XBS5	289 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	NCR2	O95944	276 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	IL5	P05113	134 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	CCL3L1	P16619	93 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	GCHFR	P30047	84 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	LINC01545	Q5VT33	79 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	SCIMP	Q6UWF3	145 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	TCEAL4	Q96EI5	215 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	EEA1	Q15075	1411 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	MYOM3	Q5VTT5	1437 aa		0.29	□□□□□ -2.36
CD44-238	ENST00000534296	CDK13	Q14004	1512 aa	Known RBP	0.28	□□□□□ -2.36
CD44-238	ENST00000534296	PEG3	Q9GZU2	1588 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	CUL7	Q14999	1698 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	RGPD1	P0DJD0	1748 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	SPHKAP	Q2M3C7	1700 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	MARF1	Q9Y4F3	1742 aa	Known RBP	0.28	□□□□□ -2.36
CD44-238	ENST00000534296	LINC00694	P0DN24	101 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	IFITM1	P13164	125 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	SMCO1	Q147U7	214 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	MIC13	Q5XKP0	118 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	KCNRG	Q8N5I3	272 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	SPTSSA	Q969W0	71 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	PFDN5	Q99471	154 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	TPT1P8	Q9HAU6	139 aa		0.28	□□□□□ -2.36
CD44-238	ENST00000534296	WDR7	Q9Y4E6	1490 aa		0.28	□□□□□ -2.37
CD44-238	ENST00000534296	UGGT1	Q9NYU2	1555 aa		0.28	□□□□□ -2.37
CD44-238	ENST00000534296	NUP188	Q5SRE5	1749 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	DNAH6	Q9C0G6	4158 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296		A0A087WTM6	91 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296		M0R129	80 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	NMB	P08949	121 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	GUCA1A	P43080	201 aa	Predicted RBP	0.27	□□□□□ -2.37
CD44-238	ENST00000534296	MT4	P47944	62 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	COPZ1	P61923	177 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	SMIM21	Q3B7S5	101 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	C9orf116	Q5BN46	136 aa	Predicted RBP	0.27	□□□□□ -2.37
CD44-238	ENST00000534296	COPS9	Q8WXC6	57 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	ANP32B	Q92688	251 aa	Known RBP	0.27	□□□□□ -2.37
CD44-238	ENST00000534296	NRXN1	Q9ULB1	1477 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	LAMC3	Q9Y6N6	1575 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	PAPPA	Q13219	1627 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	TNRC6C	Q9HCJ0	1690 aa	Known RBP	0.27	□□□□□ -2.37
CD44-238	ENST00000534296	PATJ	Q8NI35	1801 aa		0.27	□□□□□ -2.37
CD44-238	ENST00000534296	MYH8	P13535	1937 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	GVQW2	A0A096LPI5	108 aa	Predicted RBP	0.26	□□□□□ -2.37
CD44-238	ENST00000534296	TMEM14DP	A8MWL7	114 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	SPRR2E	P22531	72 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	SPRR2D	P22532	72 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	SPRR2B	P35325	72 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	SPRR2A	P35326	72 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	NPC2	P61916	151 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	UBE2DNL	Q8IWF7	75 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	ABCC5	O15440	1437 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	SOGA1	O94964	1423 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	GRIN2A	Q12879	1464 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	USP32	Q8NFA0	1604 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	ADCY10	Q96PN6	1610 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	CROCC2	H7BZ55	1655 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	TSC2	P49815	1807 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	DOCK1	Q14185	1865 aa		0.26	□□□□□ -2.37
CD44-238	ENST00000534296	TNXB	P22105	4242 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	SHPRH	Q149N8	1683 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	ROBO1	Q9Y6N7	1651 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	TARBP1	Q13395	1621 aa	Known RBP	0.25	□□□□□ -2.37
CD44-238	ENST00000534296	GOLGA3	Q08378	1498 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	LCE6A	A0A183	80 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	NDUFB6	O95139	128 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	EDDM3B	P56851	147 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	UBE2G1	P62253	170 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296		Q6ZRX8	168 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296		Q6ZUT4	128 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	SPTSSB	Q8NFR3	76 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	LINC00846	Q9NV44	126 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	CCDC167	Q9P0B6	97 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	PAIP2B	Q9ULR5	123 aa	Known RBP	0.25	□□□□□ -2.37
CD44-238	ENST00000534296	LPA	P08519	4548 aa		0.25	□□□□□ -2.37
CD44-238	ENST00000534296	LRRC37A2	A6NM11	1700 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	LAMC1	P11047	1609 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	ASXL1	Q8IXJ9	1541 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	DAPK1	P53355	1430 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	TMEM2	Q9UHN6	1383 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	APOC4-APOC2	K7ER74	178 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	NPFF	O15130	113 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	CBLN1	P23435	193 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	SDF2	Q99470	211 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	SEC11C	Q9BY50	192 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	MUC17	Q685J3	4493 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	DNAH3	Q8TD57	4116 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	NWD2	Q9ULI1	1742 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	NRXN3	Q9Y4C0	1643 aa		0.24	□□□□□ -2.37
CD44-238	ENST00000534296	KDM5D	Q9BY66	1539 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296	TRGV1	A0A0A0MS02	117 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296		A0A0D9SFI3	127 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296	CFD	P00746	253 aa	Predicted RBP	0.23	□□□□□ -2.37
CD44-238	ENST00000534296	S100A3	P33764	101 aa		0.23	□□□□□ -2.37
CD44-238	ENST00000534296	INSL4	Q14641	139 aa		0.23	□□□□□ -2.37

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