RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, humanhuman

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-215ENST00000533440 ST20Q9HBF5 79 aa4.52□□□□□ -1.69
NXF1-215ENST00000533440 BIN3Q9NQY0 253 aa4.52□□□□□ -1.69
NXF1-215ENST00000533440 UBE2D4Q9Y2X8 147 aa4.52□□□□□ -1.69
NXF1-215ENST00000533440 IGHV3OR16-9A0A0B4J2B5 98 aa4.51□□□□□ -1.69
NXF1-215ENST00000533440 LINC00310P59036 64 aa4.51□□□□□ -1.69
NXF1-215ENST00000533440 KRTAP13-2Q52LG2 175 aa4.51□□□□□ -1.69
NXF1-215ENST00000533440 C9orf129Q5T035 196 aaKnown RBP4.51□□□□□ -1.69
NXF1-215ENST00000533440 MANBALQ9NQG1 85 aa4.51□□□□□ -1.69
NXF1-215ENST00000533440 CTAG1AP78358 180 aa4.5□□□□□ -1.69
NXF1-215ENST00000533440 SMAGPQ0VAQ4 97 aa4.5□□□□□ -1.69
NXF1-215ENST00000533440 Q6ZUT4 128 aa4.5□□□□□ -1.69
NXF1-215ENST00000533440 LINC00173Q6ZV60 143 aa4.5□□□□□ -1.69
NXF1-215ENST00000533440 GNG13Q9P2W3 67 aa4.5□□□□□ -1.69
NXF1-215ENST00000533440 NDUFC2-KCTD14E9PQ53 114 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 ARPC5O15511 151 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 KIAA0087Q14695 138 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 C21orf62-AS1Q17RA5 79 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 LINC00242Q5T6M2 205 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 LINC00304Q8N9R0 145 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 TIMM21Q9BVV7 248 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 KRTAP4-1Q9BYQ7 146 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 CTDSP1Q9GZU7 261 aa4.49□□□□□ -1.69
NXF1-215ENST00000533440 TRBV30A0A0K0K1B3 111 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 K7EN84 100 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 VCYO14598 125 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 PDE6DO43924 150 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 FCER1GP30273 86 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 RPL28P46779 137 aaKnown RBP4.48□□□□□ -1.69
NXF1-215ENST00000533440 KRTAP19-4Q3LI73 84 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 ASB16-AS1Q495Z4 193 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 FAM104AQ969W3 186 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 PPDPFQ9H3Y8 114 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 ANAPC11Q9NYG5 84 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 C22orf24Q9Y442 160 aa4.48□□□□□ -1.69
NXF1-215ENST00000533440 BCE1O60756 84 aa4.47□□□□□ -1.69
NXF1-215ENST00000533440 RAB4AP20338 218 aa4.47□□□□□ -1.69
NXF1-215ENST00000533440 TMEM191AQ9H0A3 160 aa4.47□□□□□ -1.69
NXF1-215ENST00000533440 MED9Q9NWA0 146 aa4.47□□□□□ -1.69
NXF1-215ENST00000533440 ZNF345Q14585 488 aa4.46□□□□□ -1.7
NXF1-215ENST00000533440 FAM229BQ4G0N7 80 aa4.46□□□□□ -1.7
NXF1-215ENST00000533440 LBHQ53QV2 105 aaPredicted RBP4.46□□□□□ -1.7
NXF1-215ENST00000533440 OCC1Q8TAD7 63 aa4.46□□□□□ -1.7
NXF1-215ENST00000533440 TMEM18Q96B42 140 aa4.46□□□□□ -1.7
NXF1-215ENST00000533440 KIR2DL4Q99706 377 aa4.46□□□□□ -1.7
NXF1-215ENST00000533440 BATF3Q9NR55 127 aa4.46□□□□□ -1.7
NXF1-215ENST00000533440 A8MWL6 223 aa4.45□□□□□ -1.7
NXF1-215ENST00000533440 SUMO2P61956 95 aaKnown RBP4.45□□□□□ -1.7
NXF1-215ENST00000533440 C2orf82Q6UX34 121 aa4.45□□□□□ -1.7
NXF1-215ENST00000533440 NRACQ8N912 160 aa4.45□□□□□ -1.7
NXF1-215ENST00000533440 PACRGQ96M98 296 aaPredicted RBP4.45□□□□□ -1.7
NXF1-215ENST00000533440 TP73-AS1Q9UF72 201 aa4.45□□□□□ -1.7
NXF1-215ENST00000533440 ZNF727A8MUV8 499 aa4.44□□□□□ -1.7
NXF1-215ENST00000533440 SMKR1H3BMG3 65 aa4.44□□□□□ -1.7
NXF1-215ENST00000533440 GATCO43716 136 aaKnown RBP4.44□□□□□ -1.7
NXF1-215ENST00000533440 PPP1R17O96001 155 aa4.44□□□□□ -1.7
NXF1-215ENST00000533440 RPL39P62891 51 aaKnown RBP4.44□□□□□ -1.7
NXF1-215ENST00000533440 MRPS36P82909 103 aaKnown RBP4.44□□□□□ -1.7
NXF1-215ENST00000533440 CT83Q5H943 113 aa4.44□□□□□ -1.7
NXF1-215ENST00000533440 FAM231DQ6ZW35 169 aa4.44□□□□□ -1.7
NXF1-215ENST00000533440 MRPL55Q7Z7F7 128 aaKnown RBP4.44□□□□□ -1.7
NXF1-215ENST00000533440 KRTAP13-1Q8IUC0 172 aa4.44□□□□□ -1.7
NXF1-215ENST00000533440 AMN1Q8IY45 258 aa4.44□□□□□ -1.7
NXF1-215ENST00000533440 TGIF2-C20orf24A0A0A6YYL0 155 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 A0A1B0GUT8 65 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 TEX46H3BTG2 121 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 PPP1R2P9O14990 202 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 KRTAP13-3Q3SY46 172 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 FP248Q71RG6 208 aaPredicted RBP4.43□□□□□ -1.7
NXF1-215ENST00000533440 LINC00469Q8N7U9 141 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 BORCS7Q96B45 105 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 KRTAP4-8Q9BYQ9 185 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 SPANXA1Q9NS26 97 aa4.43□□□□□ -1.7
NXF1-215ENST00000533440 IGKV2D-26A0A0A0MRZ7 120 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 IFITM10A6NMD0 228 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 SMLR1H3BR10 107 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 RPL32P62910 135 aaKnown RBP4.42□□□□□ -1.7
NXF1-215ENST00000533440 HBBP68871 147 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 LINC01561Q8N1V8 128 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 LINC00337Q8N6G1 96 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 LINC00167Q96N53 147 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 XAGE1AQ9HD64 81 aa4.42□□□□□ -1.7
NXF1-215ENST00000533440 KANTRA0A1W2PQU2 76 aa4.41□□□□□ -1.7
NXF1-215ENST00000533440 C9orf118A6NHY6 69 aa4.41□□□□□ -1.7
NXF1-215ENST00000533440 HMSDA8MTL9 139 aa4.41□□□□□ -1.7
NXF1-215ENST00000533440 HIGD1CA8MV81 97 aa4.41□□□□□ -1.7
NXF1-215ENST00000533440 TCAPO15273 167 aa4.41□□□□□ -1.7
NXF1-215ENST00000533440 SEC61BP60468 96 aaKnown RBP4.41□□□□□ -1.7
NXF1-215ENST00000533440 TRBV24-1A0A075B6N3 115 aa4.4□□□□□ -1.71
NXF1-215ENST00000533440 RPL37AP8A6NKH3 93 aa4.4□□□□□ -1.71
NXF1-215ENST00000533440 KRTAP9-7A8MTY7 169 aa4.4□□□□□ -1.71
NXF1-215ENST00000533440 TAGLN2P37802 199 aaKnown RBP4.4□□□□□ -1.71
NXF1-215ENST00000533440 MT1HP80294 61 aa4.4□□□□□ -1.71
NXF1-215ENST00000533440 KRTAP19-2Q3LHN2 52 aa4.4□□□□□ -1.71
NXF1-215ENST00000533440 SPAG11AQ6PDA7 123 aa4.4□□□□□ -1.71
NXF1-215ENST00000533440 C20orf78Q9BR46 151 aa4.4□□□□□ -1.71
NXF1-215ENST00000533440 CFC1BP0CG36 223 aa4.39□□□□□ -1.71
NXF1-215ENST00000533440 UBE2AP49459 152 aa4.39□□□□□ -1.71
NXF1-215ENST00000533440 MRPL51Q4U2R6 128 aaKnown RBP4.39□□□□□ -1.71
NXF1-215ENST00000533440 IGLV4-3A0A075B6K6 122 aa4.38□□□□□ -1.71
NXF1-215ENST00000533440 LINC00862A6NCI5 91 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms