RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PI4KAP42356 2102 aa3.65□□□□□ -1.83
CD44-236ENST00000533222 A0A087WSZ3 146 aa3.64□□□□□ -1.83
CD44-236ENST00000533222 ATP6V0E1O15342 81 aa3.64□□□□□ -1.83
CD44-236ENST00000533222 ROMO1P60602 79 aa3.64□□□□□ -1.83
CD44-236ENST00000533222 NNATQ16517 81 aa3.64□□□□□ -1.83
CD44-236ENST00000533222 KPRPQ5T749 579 aaPredicted RBP3.64□□□□□ -1.83
CD44-236ENST00000533222 WFDC9Q8NEX5 89 aa3.64□□□□□ -1.83
CD44-236ENST00000533222 SMIM11BQ8TCY0 68 aa3.64□□□□□ -1.83
CD44-236ENST00000533222 ZNF407Q9C0G0 2248 aa3.64□□□□□ -1.83
CD44-236ENST00000533222 DIDO1Q9BTC0 2240 aaKnown RBP3.63□□□□□ -1.83
CD44-236ENST00000533222 IGHV3OR16-12A0A075B7B8 117 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 IGKV3D-15A0A087WSY6 115 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 IGHV3-43A0A0B4J1X8 118 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 IGHV4-61A0A0C4DH41 118 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 ETDCA0A1B0GVM5 59 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 PINLYPA6NC86 204 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 I3L2K1 104 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 IGKV1-17P01599 117 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 IGHV4-59P01825 116 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 STATHP02808 62 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 IGKV4-1P06312 121 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 MSMBP08118 114 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 LYZP61626 148 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 KLK9Q2XQG4 91 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 COX7B2Q8TF08 81 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 MUC4Q99102 2169 aa3.63□□□□□ -1.83
CD44-236ENST00000533222 PDE4DIPQ5VU43 2346 aa3.62□□□□□ -1.83
CD44-236ENST00000533222 COL27A1Q8IZC6 1860 aaPredicted RBP3.62□□□□□ -1.83
CD44-236ENST00000533222 MED13Q9UHV7 2174 aa3.62□□□□□ -1.83
CD44-236ENST00000533222 IGHV3-48P01763 117 aa3.62□□□□□ -1.83
CD44-236ENST00000533222 RPL39P5Q59GN2 51 aa3.62□□□□□ -1.83
CD44-236ENST00000533222 RPL39LQ96EH5 51 aaKnown RBP3.62□□□□□ -1.83
CD44-236ENST00000533222 DEFB126Q9BYW3 111 aa3.62□□□□□ -1.83
CD44-236ENST00000533222 ZGRF1Q86YA3 2104 aa3.62□□□□□ -1.83
CD44-236ENST00000533222 MALRD1Q5VYJ5 2156 aa3.62□□□□□ -1.83
CD44-236ENST00000533222 IGKV2-28A0A075B6P5 120 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 TRGV2A0A075B6R0 118 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 TRBV6-4A0A1B0GX49 114 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 A8MU10 97 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 IGKV2D-28P01615 120 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 IGHV3-53P01767 116 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 MT3P25713 68 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 ZFAND2AQ8N6M9 145 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 SND1-IT1Q9HBX3 110 aa3.61□□□□□ -1.83
CD44-236ENST00000533222 ZFHX3Q15911 3703 aa3.6□□□□□ -1.83
CD44-236ENST00000533222 IGHV3OR16-8A0A075B7F1 116 aa3.6□□□□□ -1.83
CD44-236ENST00000533222 IGHV4-30-2A0A087WSY4 118 aa3.6□□□□□ -1.83
CD44-236ENST00000533222 IGKV2-40A0A087WW87 121 aaPredicted RBP3.6□□□□□ -1.83
CD44-236ENST00000533222 IGHV3-38A0A0C4DH36 116 aa3.6□□□□□ -1.83
CD44-236ENST00000533222 IGKV2D-40P01614 121 aaPredicted RBP3.6□□□□□ -1.83
CD44-236ENST00000533222 CCL3P10147 92 aa3.6□□□□□ -1.83
CD44-236ENST00000533222 COX7BP24311 80 aa3.6□□□□□ -1.83
CD44-236ENST00000533222 RPL39P62891 51 aaKnown RBP3.6□□□□□ -1.83
CD44-236ENST00000533222 NPBQ8NG41 125 aa3.6□□□□□ -1.83
CD44-236ENST00000533222 TNCP24821 2201 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 IGHV7-81A0A0B4J1V7 117 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 IGHV1-3A0A0C4DH29 117 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 KRTAP16-1A8MUX0 517 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 K7EQD1 137 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 M0QY20 66 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 NDUFA4O00483 81 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 IGKV3-15P01624 115 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 IGLV2-23P01705 113 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 IGHV3-23P01764 117 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 C17orf58Q2M2W7 97 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 WFDC10AQ9H1F0 79 aa3.59□□□□□ -1.83
CD44-236ENST00000533222 IGHV3-15A0A0B4J1V0 119 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 IGHV3-20A0A0C4DH32 117 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 SRRM5B3KS81 715 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 K7EIM0 57 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 NDPQ00604 133 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 MRGPRG-AS1Q2M3A8 158 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 C1orf134Q5TEV5 83 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 CNEP1R1Q8N9A8 125 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 Q8NAQ8 132 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 Q8NDZ9 215 aa3.58□□□□□ -1.84
CD44-236ENST00000533222 IGLV7-46A0A075B6I9 117 aa3.57□□□□□ -1.84
CD44-236ENST00000533222 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.57□□□□□ -1.84
CD44-236ENST00000533222 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.57□□□□□ -1.84
CD44-236ENST00000533222 IGHV3-21A0A0B4J1V1 117 aa3.57□□□□□ -1.84
CD44-236ENST00000533222 IGHV1-2P23083 117 aa3.57□□□□□ -1.84
CD44-236ENST00000533222 C14orf177Q52M58 125 aa3.57□□□□□ -1.84
CD44-236ENST00000533222 PRR14LQ5THK1 2151 aa3.57□□□□□ -1.84
CD44-236ENST00000533222 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.57□□□□□ -1.84
CD44-236ENST00000533222 Q6ZTI0 123 aa3.57□□□□□ -1.84
CD44-236ENST00000533222 DOCK10Q96BY6 2186 aa3.57□□□□□ -1.84
CD44-236ENST00000533222 A0A1W2PNM2 257 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 DEFB108AA8MXU0 73 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 H0Y9P7 68 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 MGPP08493 103 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 RNASE3P12724 160 aaKnown RBP3.56□□□□□ -1.84
CD44-236ENST00000533222 SPATA8Q6RVD6 105 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 LINC00575Q6W349 94 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 Q8TAT8 98 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 CADP27708 2225 aa3.56□□□□□ -1.84
CD44-236ENST00000533222 IGHV3-64A0A075B6Q5 118 aa3.55□□□□□ -1.84
CD44-236ENST00000533222 LRCOL1A6NCL2 159 aa3.55□□□□□ -1.84
CD44-236ENST00000533222 B4DSR2 109 aa3.55□□□□□ -1.84
CD44-236ENST00000533222 IGHV3-11P01762 117 aa3.55□□□□□ -1.84
CD44-236ENST00000533222 SPAG11BQ08648 103 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms