RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 COX6A2Q02221 97 aa13.1□□□□□ -0.31
VPS28-207ENST00000526977 IGHV1-58A0A0C4DH39 117 aa13.09□□□□□ -0.31
VPS28-207ENST00000526977 MRPL23Q16540 153 aaKnown RBP13.09□□□□□ -0.31
VPS28-207ENST00000526977 LINC00242Q5T6M2 205 aa13.09□□□□□ -0.31
VPS28-207ENST00000526977 SH2D6Q7Z4S9 175 aa13.09□□□□□ -0.31
VPS28-207ENST00000526977 FAM19A3Q7Z5A8 133 aa13.09□□□□□ -0.31
VPS28-207ENST00000526977 ATP6V0E2Q8NHE4 81 aa13.09□□□□□ -0.31
VPS28-207ENST00000526977 TMEM101Q96IK0 257 aa13.09□□□□□ -0.31
VPS28-207ENST00000526977 NHP2Q9NX24 153 aaKnown RBP13.09□□□□□ -0.31
VPS28-207ENST00000526977 CDKN2A-AS1Q9UH64 79 aa13.09□□□□□ -0.31
VPS28-207ENST00000526977 IGLV5-45A0A087WSX0 123 aa13.08□□□□□ -0.31
VPS28-207ENST00000526977 TRAV10A0A0B4J240 114 aa13.08□□□□□ -0.31
VPS28-207ENST00000526977 H3BUT2 72 aa13.08□□□□□ -0.31
VPS28-207ENST00000526977 K7ERJ3 54 aa13.08□□□□□ -0.31
VPS28-207ENST00000526977 NAA38Q9BRA0 125 aaKnown RBP13.08□□□□□ -0.31
VPS28-207ENST00000526977 GAGE6Q13070 117 aa13.08□□□□□ -0.32
VPS28-207ENST00000526977 ICOSQ9Y6W8 199 aa13.08□□□□□ -0.32
VPS28-207ENST00000526977 SPINK8P0C7L1 97 aa13.07□□□□□ -0.32
VPS28-207ENST00000526977 SRSF9Q13242 221 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS28-207ENST00000526977 TRAV13-1A0A0B4J241 112 aa13.06□□□□□ -0.32
VPS28-207ENST00000526977 HERVK_113P63121 156 aa13.06□□□□□ -0.32
VPS28-207ENST00000526977 CHCHD5Q9BSY4 110 aa13.06□□□□□ -0.32
VPS28-207ENST00000526977 COL7A1Q02388 2944 aa13.06□□□□□ -0.32
VPS28-207ENST00000526977 SPANXB1Q9NS25 103 aaPredicted RBP13.05□□□□□ -0.32
VPS28-207ENST00000526977 C10orf126Q8N4M7 172 aa13.04□□□□□ -0.32
VPS28-207ENST00000526977 IGLV4-60A0A075B6I1 120 aa13.03□□□□□ -0.32
VPS28-207ENST00000526977 A0A096LPF7 62 aa13.03□□□□□ -0.32
VPS28-207ENST00000526977 A0A1B0GWB2 263 aa13.03□□□□□ -0.32
VPS28-207ENST00000526977 A0A1W2PPM0 123 aa13.02□□□□□ -0.33
VPS28-207ENST00000526977 A0A0J9YXY3 114 aa13.01□□□□□ -0.33
VPS28-207ENST00000526977 IGHV3-30P01768 117 aa13.01□□□□□ -0.33
VPS28-207ENST00000526977 IGHV3-30-5P0DP03 117 aa13.01□□□□□ -0.33
VPS28-207ENST00000526977 PRKDCP78527 4128 aaKnown RBP13.01□□□□□ -0.33
VPS28-207ENST00000526977 NDUFA12Q9UI09 145 aa13.01□□□□□ -0.33
VPS28-207ENST00000526977 GAGE10A6NGK3 116 aa13□□□□□ -0.33
VPS28-207ENST00000526977 IGLV5-39A0A0G2JS06 123 aa13□□□□□ -0.33
VPS28-207ENST00000526977 STAB2Q8WWQ8 2551 aa12.99□□□□□ -0.33
VPS28-207ENST00000526977 ZFAND6Q6FIF0 208 aa12.99□□□□□ -0.33
VPS28-207ENST00000526977 C15orf53Q8NAA6 179 aa12.99□□□□□ -0.33
VPS28-207ENST00000526977 IGLL5B9A064 214 aa12.98□□□□□ -0.33
VPS28-207ENST00000526977 K7EP34 96 aa12.98□□□□□ -0.33
VPS28-207ENST00000526977 TMEM238LA0A1B0GVL6 79 aa12.97□□□□□ -0.33
VPS28-207ENST00000526977 A6NJY4 79 aa12.97□□□□□ -0.33
VPS28-207ENST00000526977 SMIM1B2RUZ4 78 aa12.97□□□□□ -0.33
VPS28-207ENST00000526977 TMEM262E9PQX1 116 aa12.97□□□□□ -0.33
VPS28-207ENST00000526977 FABP2P12104 132 aa12.97□□□□□ -0.33
VPS28-207ENST00000526977 GTF2H5Q6ZYL4 71 aa12.97□□□□□ -0.33
VPS28-207ENST00000526977 A0A1B0GUV1 79 aa12.96□□□□□ -0.33
VPS28-207ENST00000526977 IGKV3OR2-268A0A0C4DH90 116 aa12.96□□□□□ -0.34
VPS28-207ENST00000526977 LYPD5Q6UWN5 251 aa12.96□□□□□ -0.34
VPS28-207ENST00000526977 LITAFQ99732 161 aa12.96□□□□□ -0.34
VPS28-207ENST00000526977 TMEM238C9JI98 176 aa12.95□□□□□ -0.34
VPS28-207ENST00000526977 RBX1P62877 108 aa12.95□□□□□ -0.34
VPS28-207ENST00000526977 LELP1Q5T871 98 aa12.95□□□□□ -0.34
VPS28-207ENST00000526977 SPCS1Q9Y6A9 102 aa12.95□□□□□ -0.34
VPS28-207ENST00000526977 NDUFA1O15239 70 aa12.94□□□□□ -0.34
VPS28-207ENST00000526977 ADAMTSL4-AS1Q5T5F5 129 aa12.93□□□□□ -0.34
VPS28-207ENST00000526977 MUSTN1Q8IVN3 82 aa12.93□□□□□ -0.34
VPS28-207ENST00000526977 FBN3Q75N90 2809 aa12.92□□□□□ -0.34
VPS28-207ENST00000526977 IGHV3OR16-9A0A0B4J2B5 98 aa12.91□□□□□ -0.34
VPS28-207ENST00000526977 LINC00959A0A1B0GUT2 108 aa12.91□□□□□ -0.34
VPS28-207ENST00000526977 CFC1BP0CG36 223 aa12.91□□□□□ -0.34
VPS28-207ENST00000526977 CFC1P0CG37 223 aa12.91□□□□□ -0.34
VPS28-207ENST00000526977 APOMO95445 188 aa12.91□□□□□ -0.34
VPS28-207ENST00000526977 ESRGQ1W209 222 aa12.9□□□□□ -0.34
VPS28-207ENST00000526977 Q9H8V8 135 aa12.9□□□□□ -0.34
VPS28-207ENST00000526977 A4D1N5 150 aa12.89□□□□□ -0.35
VPS28-207ENST00000526977 SPANXDQ9BXN6 97 aa12.89□□□□□ -0.35
VPS28-207ENST00000526977 PGPEP1Q9NXJ5 209 aa12.89□□□□□ -0.35
VPS28-207ENST00000526977 SPANXCQ9NY87 97 aa12.89□□□□□ -0.35
VPS28-207ENST00000526977 NUPR2A6NF83 97 aa12.89□□□□□ -0.35
VPS28-207ENST00000526977 TIMM17BO60830 172 aa12.89□□□□□ -0.35
VPS28-207ENST00000526977 PRSS2P07478 247 aa12.88□□□□□ -0.35
VPS28-207ENST00000526977 RPL24P83731 157 aaKnown RBP12.88□□□□□ -0.35
VPS28-207ENST00000526977 ZNF625Q96I27 306 aaPredicted RBP12.88□□□□□ -0.35
VPS28-207ENST00000526977 KLK5Q9Y337 293 aaPredicted RBP12.88□□□□□ -0.35
VPS28-207ENST00000526977 MIAQ16674 131 aa12.87□□□□□ -0.35
VPS28-207ENST00000526977 A0A087WZ39 114 aa12.86□□□□□ -0.35
VPS28-207ENST00000526977 EIF4EBP3O60516 100 aaPredicted RBP12.86□□□□□ -0.35
VPS28-207ENST00000526977 TSPAN13O95857 204 aa12.86□□□□□ -0.35
VPS28-207ENST00000526977 CCL18P55774 89 aa12.86□□□□□ -0.35
VPS28-207ENST00000526977 SS18Q15532 418 aa12.86□□□□□ -0.35
VPS28-207ENST00000526977 C5orf38Q86SI9 138 aa12.86□□□□□ -0.35
VPS28-207ENST00000526977 Q8N3U1 123 aa12.86□□□□□ -0.35
VPS28-207ENST00000526977 LINC00269Q8N2A0 174 aa12.85□□□□□ -0.35
VPS28-207ENST00000526977 CIRBPQ14011 172 aaKnown RBP12.84□□□□□ -0.35
VPS28-207ENST00000526977 CLPSL2Q6UWE3 100 aa12.84□□□□□ -0.35
VPS28-207ENST00000526977 COX7B2Q8TF08 81 aa12.84□□□□□ -0.35
VPS28-207ENST00000526977 PRO1854Q9UHT4 67 aa12.84□□□□□ -0.35
VPS28-207ENST00000526977 XCL1P47992 114 aa12.83□□□□□ -0.36
VPS28-207ENST00000526977 DAND5Q8N907 189 aa12.83□□□□□ -0.36
VPS28-207ENST00000526977 APLNQ9ULZ1 77 aa12.83□□□□□ -0.36
VPS28-207ENST00000526977 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.82□□□□□ -0.36
VPS28-207ENST00000526977 ANGP03950 147 aaKnown RBP12.82□□□□□ -0.36
VPS28-207ENST00000526977 HERV-K104P63124 156 aa12.82□□□□□ -0.36
VPS28-207ENST00000526977 A0A0B4J2C4 111 aa12.81□□□□□ -0.36
VPS28-207ENST00000526977 IFITM1P13164 125 aa12.81□□□□□ -0.36
VPS28-207ENST00000526977 NPC2P61916 151 aa12.81□□□□□ -0.36
VPS28-207ENST00000526977 TOMM7Q9P0U1 55 aa12.81□□□□□ -0.36
VPS28-207ENST00000526977 REG3AQ06141 175 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms