RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 WNK1Q9H4A3 2382 aa15.06■□□□□ 0
VPS28-205ENST00000526204 TRGV4A0A0C4DH28 118 aa15.05■□□□□ 0
VPS28-205ENST00000526204 F5H768 121 aa15.05■□□□□ 0
VPS28-205ENST00000526204 RPL13AP40429 203 aaKnown RBP15.05■□□□□ 0
VPS28-205ENST00000526204 HERV-K104P63124 156 aa15.05■□□□□ 0
VPS28-205ENST00000526204 ZNF625Q96I27 306 aaPredicted RBP15.05■□□□□ -0
VPS28-205ENST00000526204 PRIMA1Q86XR5 153 aa15.04■□□□□ -0
VPS28-205ENST00000526204 UNC79Q9P2D8 2635 aa15.03■□□□□ -0
VPS28-205ENST00000526204 NF1P21359 2839 aa15.03■□□□□ -0
VPS28-205ENST00000526204 LOC100131303A0A0U1RQF7 123 aa15.01□□□□□ -0.01
VPS28-205ENST00000526204 NTN5Q8WTR8 489 aaPredicted RBP15.01□□□□□ -0.01
VPS28-205ENST00000526204 PPDPFQ9H3Y8 114 aa15.01□□□□□ -0.01
VPS28-205ENST00000526204 LST1O00453 97 aa15.01□□□□□ -0.01
VPS28-205ENST00000526204 MEIG1Q5JSS6 88 aa15.01□□□□□ -0.01
VPS28-205ENST00000526204 H3BT86 120 aa15□□□□□ -0.01
VPS28-205ENST00000526204 FHL2Q14192 279 aa14.99□□□□□ -0.01
VPS28-205ENST00000526204 C2orf82Q6UX34 121 aa14.99□□□□□ -0.01
VPS28-205ENST00000526204 TRBV6-8A0A0A6YYG3 113 aa14.98□□□□□ -0.01
VPS28-205ENST00000526204 XGP55808 180 aa14.98□□□□□ -0.01
VPS28-205ENST00000526204 A0A0U1RRA0 63 aa14.97□□□□□ -0.01
VPS28-205ENST00000526204 MT-ATP8P03928 68 aa14.97□□□□□ -0.01
VPS28-205ENST00000526204 CLEC2BQ92478 149 aa14.97□□□□□ -0.01
VPS28-205ENST00000526204 CUBNO60494 3623 aa14.96□□□□□ -0.01
VPS28-205ENST00000526204 UBE2WQ96B02 151 aa14.96□□□□□ -0.01
VPS28-205ENST00000526204 ACANP16112 2415 aa14.96□□□□□ -0.02
VPS28-205ENST00000526204 GAGE6Q13070 117 aa14.95□□□□□ -0.02
VPS28-205ENST00000526204 SOSTDC1Q6X4U4 206 aa14.95□□□□□ -0.02
VPS28-205ENST00000526204 TEX49A0A1B0GTD5 131 aa14.95□□□□□ -0.02
VPS28-205ENST00000526204 KIR2DL5BQ8NHK3 375 aa14.95□□□□□ -0.02
VPS28-205ENST00000526204 HECTD1Q9ULT8 2610 aa14.94□□□□□ -0.02
VPS28-205ENST00000526204 A0A1B0GV72 72 aa14.94□□□□□ -0.02
VPS28-205ENST00000526204 PF4P02776 101 aa14.93□□□□□ -0.02
VPS28-205ENST00000526204 COX7B2Q8TF08 81 aa14.93□□□□□ -0.02
VPS28-205ENST00000526204 CHCHD5Q9BSY4 110 aa14.93□□□□□ -0.02
VPS28-205ENST00000526204 SETXQ7Z333 2677 aaKnown RBP14.93□□□□□ -0.02
VPS28-205ENST00000526204 SHISA2Q6UWI4 295 aa14.92□□□□□ -0.02
VPS28-205ENST00000526204 FASNP49327 2511 aaKnown RBP14.92□□□□□ -0.02
VPS28-205ENST00000526204 COX7A2LO14548 114 aa14.92□□□□□ -0.02
VPS28-205ENST00000526204 IGLV4-60A0A075B6I1 120 aa14.91□□□□□ -0.02
VPS28-205ENST00000526204 LINC00612Q8N6U2 182 aa14.9□□□□□ -0.02
VPS28-205ENST00000526204 LINC00482Q8N8I6 264 aa14.9□□□□□ -0.02
VPS28-205ENST00000526204 IGHV3OR16-9A0A0B4J2B5 98 aa14.89□□□□□ -0.03
VPS28-205ENST00000526204 DEFB130BP0DP73 79 aa14.89□□□□□ -0.03
VPS28-205ENST00000526204 DEFB130AP0DP74 79 aa14.89□□□□□ -0.03
VPS28-205ENST00000526204 SETD2Q9BYW2 2564 aaPredicted RBP14.89□□□□□ -0.03
VPS28-205ENST00000526204 TRAV8-4A0A0B4J246 113 aa14.89□□□□□ -0.03
VPS28-205ENST00000526204 NIPBLQ6KC79 2804 aaeCLIP14.88□□□□□ -0.03
VPS28-205ENST00000526204 CRLF1O75462 422 aa14.88□□□□□ -0.03
VPS28-205ENST00000526204 JMJD1CQ15652 2540 aa14.88□□□□□ -0.03
VPS28-205ENST00000526204 IGKV3OR2-268A0A0C4DH90 116 aa14.87□□□□□ -0.03
VPS28-205ENST00000526204 SMIM9A6NGZ8 99 aa14.87□□□□□ -0.03
VPS28-205ENST00000526204 KRTAP10-3P60369 221 aa14.87□□□□□ -0.03
VPS28-205ENST00000526204 A0A087WZ39 114 aa14.87□□□□□ -0.03
VPS28-205ENST00000526204 CKS1BP61024 79 aa14.87□□□□□ -0.03
VPS28-205ENST00000526204 NOTCH3Q9UM47 2321 aa14.87□□□□□ -0.03
VPS28-205ENST00000526204 TRAV13-2A0A0B4J235 113 aa14.86□□□□□ -0.03
VPS28-205ENST00000526204 TOMM7Q9P0U1 55 aa14.86□□□□□ -0.03
VPS28-205ENST00000526204 DEFB121Q5J5C9 76 aa14.86□□□□□ -0.03
VPS28-205ENST00000526204 FAM222AQ5U5X8 452 aa14.85□□□□□ -0.03
VPS28-205ENST00000526204 MTORP42345 2549 aa14.84□□□□□ -0.03
VPS28-205ENST00000526204 MIR7-3HGQ8N6C7 128 aa14.84□□□□□ -0.03
VPS28-205ENST00000526204 C2CD3Q4AC94 2353 aa14.83□□□□□ -0.03
VPS28-205ENST00000526204 GYPEP15421 78 aa14.83□□□□□ -0.04
VPS28-205ENST00000526204 SMR3AQ99954 134 aa14.83□□□□□ -0.04
VPS28-205ENST00000526204 LINC00959A0A1B0GUT2 108 aa14.83□□□□□ -0.04
VPS28-205ENST00000526204 SNCGO76070 127 aa14.83□□□□□ -0.04
VPS28-205ENST00000526204 TRACP01848 142 aa14.83□□□□□ -0.04
VPS28-205ENST00000526204 X6R8D5 127 aa14.83□□□□□ -0.04
VPS28-205ENST00000526204 IBA57-AS1B1ANH7 110 aa14.82□□□□□ -0.04
VPS28-205ENST00000526204 CITED1Q99966 193 aa14.82□□□□□ -0.04
VPS28-205ENST00000526204 PRO0255Q9UI72 69 aa14.82□□□□□ -0.04
VPS28-205ENST00000526204 A0A1B0GUV1 79 aa14.81□□□□□ -0.04
VPS28-205ENST00000526204 FAM240AA0A1B0GVK7 77 aa14.81□□□□□ -0.04
VPS28-205ENST00000526204 CRPP02741 224 aa14.81□□□□□ -0.04
VPS28-205ENST00000526204 NOTCH2Q04721 2471 aa14.81□□□□□ -0.04
VPS28-205ENST00000526204 LINC00158P58513 81 aa14.81□□□□□ -0.04
VPS28-205ENST00000526204 SND1-IT1Q9HBX3 110 aa14.81□□□□□ -0.04
VPS28-205ENST00000526204 RPL28P46779 137 aaKnown RBP14.79□□□□□ -0.04
VPS28-205ENST00000526204 C9orf66Q5T8R8 295 aa14.79□□□□□ -0.04
VPS28-205ENST00000526204 C5orf38Q86SI9 138 aa14.79□□□□□ -0.04
VPS28-205ENST00000526204 ANK3Q12955 4377 aaKnown RBP14.79□□□□□ -0.04
VPS28-205ENST00000526204 SS18Q15532 418 aa14.78□□□□□ -0.04
VPS28-205ENST00000526204 LYRM9A8MSI8 78 aa14.78□□□□□ -0.04
VPS28-205ENST00000526204 MRPL23Q16540 153 aaKnown RBP14.77□□□□□ -0.04
VPS28-205ENST00000526204 LY6G6DO95868 133 aa14.77□□□□□ -0.05
VPS28-205ENST00000526204 IGKV2-28A0A075B6P5 120 aa14.76□□□□□ -0.05
VPS28-205ENST00000526204 IGKV2D-28P01615 120 aa14.76□□□□□ -0.05
VPS28-205ENST00000526204 HIVEP2P31629 2446 aa14.76□□□□□ -0.05
VPS28-205ENST00000526204 GAGE2BQ13066 116 aa14.75□□□□□ -0.05
VPS28-205ENST00000526204 GAGE2EQ4V326 116 aa14.75□□□□□ -0.05
VPS28-205ENST00000526204 C6orf226Q5I0X4 101 aa14.75□□□□□ -0.05
VPS28-205ENST00000526204 LINC00337Q8N6G1 96 aa14.75□□□□□ -0.05
VPS28-205ENST00000526204 GAGE2DQ9UEU5 116 aa14.75□□□□□ -0.05
VPS28-205ENST00000526204 OTOGQ6ZRI0 2925 aa14.75□□□□□ -0.05
VPS28-205ENST00000526204 PAX4O43316 350 aa14.74□□□□□ -0.05
VPS28-205ENST00000526204 CCL18P55774 89 aa14.74□□□□□ -0.05
VPS28-205ENST00000526204 LINC01561Q8N1V8 128 aa14.74□□□□□ -0.05
VPS28-205ENST00000526204 Q6Q795 121 aa14.74□□□□□ -0.05
VPS28-205ENST00000526204 C15orf53Q8NAA6 179 aa14.74□□□□□ -0.05
VPS28-205ENST00000526204 BAALC-AS2P0C853 105 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms