RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	C22orf42	Q6IC83	251 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	COX6B2	Q6YFQ2	88 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	FAM231D	Q6ZW35	169 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	STX12	Q86Y82	276 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	CLVS1	Q8IUQ0	354 aa	Predicted RBP	0.73	□□□□□ -2.29
CD44-212	ENST00000524922	LYPD6B	Q8NI32	183 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	CAMK2N2	Q96S95	79 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	LIMD2	Q9BT23	127 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	TIMM21	Q9BVV7	248 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	FUNDC2	Q9BWH2	189 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	NPCDR1	Q9BY65	106 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	NIT2	Q9NQR4	276 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	NUDT15	Q9NV35	164 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	CCDC59	Q9P031	241 aa	Known RBP	0.73	□□□□□ -2.29
CD44-212	ENST00000524922	GSKIP	Q9P0R6	139 aa		0.73	□□□□□ -2.29
CD44-212	ENST00000524922	IGHV3OR16-9	A0A0B4J2B5	98 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	TRBV27	A0A0K0K1C4	114 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	LINC00959	A0A1B0GUT2	108 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	ANKRD20A5P	A0PJZ0	165 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	KRBOX1	C9JBD0	128 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922		F2Z2F3	143 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	PPP1R2P9	O14990	202 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	CST7	O76096	145 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	SFT2D2	O95562	160 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	PPP1R17	O96001	155 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	GCG	P01275	180 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	LTA	P01374	205 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	MB	P02144	154 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	ARMS2	P0C7Q2	107 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	TRGC1	P0CF51	173 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	SMIM17	P0DL12	118 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	IAPP	P10997	89 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	PVALB	P20472	110 aa	Predicted RBP	0.72	□□□□□ -2.29
CD44-212	ENST00000524922	VBP1	P61758	197 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	UBE2B	P63146	152 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	UBE2L3	P68036	154 aa	Known RBP	0.72	□□□□□ -2.29
CD44-212	ENST00000524922	FLI1	Q01543	452 aa	Predicted RBP	0.72	□□□□□ -2.29
CD44-212	ENST00000524922	SLC38A11	Q08AI6	406 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	RASL11A	Q6T310	242 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	SFTA2	Q6UW10	78 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	PHF5A	Q7RTV0	110 aa	Known RBP	0.72	□□□□□ -2.29
CD44-212	ENST00000524922	MRPL55	Q7Z7F7	128 aa	Known RBP	0.72	□□□□□ -2.29
CD44-212	ENST00000524922	EXOC3-AS1	Q8N2X6	119 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	OR5H6	Q8NGV6	325 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	PYDC1	Q8WXC3	89 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	FMC1	Q96HJ9	113 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	BCL7B	Q9BQE9	202 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	CCDC32	Q9BV29	185 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	ZNF471	Q9BX82	626 aa	Predicted RBP	0.72	□□□□□ -2.29
CD44-212	ENST00000524922	VCX3B	Q9H321	246 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	CDC42SE2	Q9NRR3	84 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	TMEM167B	Q9NRX6	74 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	PSENEN	Q9NZ42	101 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	UBE2D4	Q9Y2X8	147 aa		0.72	□□□□□ -2.29
CD44-212	ENST00000524922	AHNAK	Q09666	5890 aa	Known RBP	0.71	□□□□□ -2.3
CD44-212	ENST00000524922		A0A096LNJ9	63 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	XKRY2	A2RUG3	117 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	C7orf66	A4D0T2	115 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	NAP1L6	A6NFF2	107 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922		A8MWP4	228 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922		B4DEV8	164 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	TMEM238	C9JI98	176 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922		E9PLD3	99 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922		M0R381	172 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	OR7C2	O60412	319 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	UPK1B	O75841	260 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	TSPAN13	O95857	204 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	APCS	P02743	223 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	MT1F	P04733	61 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	STAG3L2	P0CL84	134 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	STAG3L3	P0CL85	134 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	PYY	P10082	97 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	NTF3	P20783	257 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	ZNF80	P51504	273 aa	Predicted RBP	0.71	□□□□□ -2.3
CD44-212	ENST00000524922	MRPS36	P82909	103 aa	Known RBP	0.71	□□□□□ -2.3
CD44-212	ENST00000524922	SERF2	P84101	59 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	SPAG11B	Q08648	103 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	IL15RA	Q13261	267 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	SCGB2B2	Q4G0G5	96 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	PCOTH	Q58A44	107 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	FAM74A4	Q5TZK3	123 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922		Q5W150	140 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	MIC13	Q5XKP0	118 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	AMMECR1L	Q6DCA0	310 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	PET117	Q6UWS5	81 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	GOLT1A	Q6ZVE7	132 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	FA2H	Q7L5A8	372 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922		Q86TA4	180 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	OR2T35	Q8NGX2	323 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	PLEKHB2	Q96CS7	222 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	MRAP2	Q96G30	205 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	SPRR4	Q96PI1	79 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	PSMG3	Q9BT73	122 aa	Predicted RBP	0.71	□□□□□ -2.3
CD44-212	ENST00000524922	NMES1	Q9C002	83 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	WDR61	Q9GZS3	305 aa	Known RBP	0.71	□□□□□ -2.3
CD44-212	ENST00000524922	BIN3	Q9NQY0	253 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	TMEM242	Q9NWH2	141 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	MBD2	Q9UBB5	411 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	EPDR1	Q9UM22	224 aa		0.71	□□□□□ -2.3
CD44-212	ENST00000524922	C22orf24	Q9Y442	160 aa		0.71	□□□□□ -2.3

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