RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 LINC00959A0A1B0GUT2 108 aa13.43□□□□□ -0.26
USP53-208ENST00000514305 KRTAP10-2P60368 255 aa13.43□□□□□ -0.26
USP53-208ENST00000514305 CDPF1Q6NVV7 123 aa13.43□□□□□ -0.26
USP53-208ENST00000514305 IFITM10A6NMD0 228 aa13.42□□□□□ -0.26
USP53-208ENST00000514305 SERF1AO75920 110 aa13.42□□□□□ -0.26
USP53-208ENST00000514305 LRP1BQ9NZR2 4599 aa13.41□□□□□ -0.26
USP53-208ENST00000514305 IGLV10-54A0A075B6I4 117 aa13.41□□□□□ -0.26
USP53-208ENST00000514305 SEC11AP67812 179 aa13.41□□□□□ -0.26
USP53-208ENST00000514305 Q6ZRN7 208 aaPredicted RBP13.41□□□□□ -0.26
USP53-208ENST00000514305 TRAV13-1A0A0B4J241 112 aa13.4□□□□□ -0.26
USP53-208ENST00000514305 Q8N1X5 172 aa13.4□□□□□ -0.26
USP53-208ENST00000514305 PMCHL1Q16048 86 aa13.39□□□□□ -0.27
USP53-208ENST00000514305 RNASE13Q5GAN3 156 aaKnown RBP13.39□□□□□ -0.27
USP53-208ENST00000514305 CHCHD10Q8WYQ3 142 aaPredicted RBP13.39□□□□□ -0.27
USP53-208ENST00000514305 AMELXQ99217 191 aa13.39□□□□□ -0.27
USP53-208ENST00000514305 OPRPNQ99935 248 aaPredicted RBP13.39□□□□□ -0.27
USP53-208ENST00000514305 C14orf177Q52M58 125 aa13.38□□□□□ -0.27
USP53-208ENST00000514305 PDZD11Q5EBL8 140 aa13.38□□□□□ -0.27
USP53-208ENST00000514305 CFAP161Q6P656 301 aa13.38□□□□□ -0.27
USP53-208ENST00000514305 CD164L2Q6UWJ8 174 aa13.38□□□□□ -0.27
USP53-208ENST00000514305 HSPB8Q9UJY1 196 aa13.38□□□□□ -0.27
USP53-208ENST00000514305 LEPROTL1O95214 131 aa13.37□□□□□ -0.27
USP53-208ENST00000514305 PMVKQ15126 192 aa13.37□□□□□ -0.27
USP53-208ENST00000514305 A0A096LNJ9 63 aa13.36□□□□□ -0.27
USP53-208ENST00000514305 GAGE12HA6NDE8 117 aa13.36□□□□□ -0.27
USP53-208ENST00000514305 XCL1P47992 114 aa13.36□□□□□ -0.27
USP53-208ENST00000514305 NDUFA6P56556 154 aa13.36□□□□□ -0.27
USP53-208ENST00000514305 KRTAP19-1Q8IUB9 90 aa13.35□□□□□ -0.27
USP53-208ENST00000514305 FAM19A2Q8N3H0 131 aa13.35□□□□□ -0.27
USP53-208ENST00000514305 S100A6P06703 90 aa13.34□□□□□ -0.27
USP53-208ENST00000514305 PRSS1P07477 247 aa13.34□□□□□ -0.27
USP53-208ENST00000514305 COA6Q5JTJ3 125 aaKnown RBP13.34□□□□□ -0.27
USP53-208ENST00000514305 BAALCQ8WXS3 180 aa13.34□□□□□ -0.27
USP53-208ENST00000514305 FAM104AQ969W3 186 aa13.34□□□□□ -0.27
USP53-208ENST00000514305 IFI27L1Q96BM0 104 aa13.34□□□□□ -0.27
USP53-208ENST00000514305 PACRGQ96M98 296 aaPredicted RBP13.34□□□□□ -0.27
USP53-208ENST00000514305 UBE2D1P51668 147 aa13.33□□□□□ -0.28
USP53-208ENST00000514305 LCE3BQ5TA77 95 aa13.33□□□□□ -0.28
USP53-208ENST00000514305 A0A087WTM6 91 aa13.32□□□□□ -0.28
USP53-208ENST00000514305 COX7A2LO14548 114 aa13.32□□□□□ -0.28
USP53-208ENST00000514305 APOMO95445 188 aa13.32□□□□□ -0.28
USP53-208ENST00000514305 MALP21145 153 aa13.32□□□□□ -0.28
USP53-208ENST00000514305 HERVK_113P63121 156 aa13.32□□□□□ -0.28
USP53-208ENST00000514305 CST9LQ9H4G1 147 aa13.32□□□□□ -0.28
USP53-208ENST00000514305 GEMIN7Q9H840 131 aaKnown RBP13.32□□□□□ -0.28
USP53-208ENST00000514305 APOBP04114 4563 aaKnown RBP13.31□□□□□ -0.28
USP53-208ENST00000514305 LINC00310P59036 64 aa13.31□□□□□ -0.28
USP53-208ENST00000514305 FOXI1Q12951 378 aa13.31□□□□□ -0.28
USP53-208ENST00000514305 KRTAP26-1Q6PEX3 210 aa13.31□□□□□ -0.28
USP53-208ENST00000514305 FAM19A3Q7Z5A8 133 aa13.31□□□□□ -0.28
USP53-208ENST00000514305 EIF4EBP3O60516 100 aaPredicted RBP13.3□□□□□ -0.28
USP53-208ENST00000514305 LINC00173Q6ZV60 143 aa13.3□□□□□ -0.28
USP53-208ENST00000514305 DNAH5Q8TE73 4624 aa13.3□□□□□ -0.28
USP53-208ENST00000514305 LRCOL1A6NCL2 159 aa13.29□□□□□ -0.28
USP53-208ENST00000514305 NUPR1O60356 82 aa13.29□□□□□ -0.28
USP53-208ENST00000514305 LINC00242Q5T6M2 205 aa13.29□□□□□ -0.28
USP53-208ENST00000514305 TRAV12-1A0A0B4J245 112 aa13.28□□□□□ -0.28
USP53-208ENST00000514305 IGHV1-58A0A0C4DH39 117 aa13.28□□□□□ -0.28
USP53-208ENST00000514305 FABP4P15090 132 aa13.28□□□□□ -0.28
USP53-208ENST00000514305 FUSP35637 526 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP53-208ENST00000514305 MAP1LC3CQ9BXW4 147 aa13.28□□□□□ -0.28
USP53-208ENST00000514305 TINCRA0A1B0GVN0 87 aa13.27□□□□□ -0.29
USP53-208ENST00000514305 USP17L23D6RBM5 183 aa13.27□□□□□ -0.29
USP53-208ENST00000514305 ZC2HC1BQ5TFG8 222 aa13.27□□□□□ -0.29
USP53-208ENST00000514305 LINC01561Q8N1V8 128 aa13.27□□□□□ -0.29
USP53-208ENST00000514305 NTN5Q8WTR8 489 aaPredicted RBP13.27□□□□□ -0.29
USP53-208ENST00000514305 IGHV3OR16-9A0A0B4J2B5 98 aa13.26□□□□□ -0.29
USP53-208ENST00000514305 EPM2AB3EWF7 344 aa13.26□□□□□ -0.29
USP53-208ENST00000514305 Q8N814 137 aa13.26□□□□□ -0.29
USP53-208ENST00000514305 LECT2O14960 151 aa13.25□□□□□ -0.29
USP53-208ENST00000514305 S100A2P29034 98 aa13.25□□□□□ -0.29
USP53-208ENST00000514305 C5orf38Q86SI9 138 aa13.25□□□□□ -0.29
USP53-208ENST00000514305 CHTOPQ9Y3Y2 248 aaKnown RBP13.25□□□□□ -0.29
USP53-208ENST00000514305 A0A0J9YXV3 536 aa13.24□□□□□ -0.29
USP53-208ENST00000514305 H3BRM9 83 aa13.24□□□□□ -0.29
USP53-208ENST00000514305 ZNF561-AS1K7EIQ3 104 aa13.24□□□□□ -0.29
USP53-208ENST00000514305 A0A087WZ39 114 aa13.23□□□□□ -0.29
USP53-208ENST00000514305 hDV102S1A0JD36 115 aa13.23□□□□□ -0.29
USP53-208ENST00000514305 LINC00469Q8N7U9 141 aa13.22□□□□□ -0.29
USP53-208ENST00000514305 OR10D4PQ8NGN7 298 aa13.22□□□□□ -0.29
USP53-208ENST00000514305 F8VRH5 84 aa13.21□□□□□ -0.29
USP53-208ENST00000514305 IGLC3P0DOY3 106 aa13.21□□□□□ -0.29
USP53-208ENST00000514305 COX6A2Q02221 97 aa13.21□□□□□ -0.29
USP53-208ENST00000514305 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.2□□□□□ -0.3
USP53-208ENST00000514305 H0Y8G0 127 aa13.2□□□□□ -0.3
USP53-208ENST00000514305 CHAC1Q9BUX1 264 aa13.2□□□□□ -0.3
USP53-208ENST00000514305 IGHV3-64A0A075B6Q5 118 aa13.19□□□□□ -0.3
USP53-208ENST00000514305 GVQW2A0A096LPI5 108 aaPredicted RBP13.19□□□□□ -0.3
USP53-208ENST00000514305 TMEM238LA0A1B0GVL6 79 aa13.19□□□□□ -0.3
USP53-208ENST00000514305 F8WDY8 70 aa13.19□□□□□ -0.3
USP53-208ENST00000514305 GCSHP23434 173 aa13.19□□□□□ -0.3
USP53-208ENST00000514305 XGP55808 180 aa13.19□□□□□ -0.3
USP53-208ENST00000514305 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.18□□□□□ -0.3
USP53-208ENST00000514305 IGLV5-45A0A087WSX0 123 aa13.18□□□□□ -0.3
USP53-208ENST00000514305 IGLV5-52A0A0A0MRZ9 124 aa13.18□□□□□ -0.3
USP53-208ENST00000514305 PRSS2P07478 247 aa13.18□□□□□ -0.3
USP53-208ENST00000514305 KRTAP10-1P60331 282 aa13.18□□□□□ -0.3
USP53-208ENST00000514305 WFDC2Q14508 124 aa13.18□□□□□ -0.3
USP53-208ENST00000514305 C15orf56Q8N910 161 aa13.18□□□□□ -0.3
USP53-208ENST00000514305 ORAOV1Q8WV07 137 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms