RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 FAM104AQ969W3 186 aa11.93□□□□□ -0.5
SQSTM1-215ENST00000514093 KIR2DL4Q99706 377 aa11.93□□□□□ -0.5
SQSTM1-215ENST00000514093 A0A1B0GUT8 65 aa11.92□□□□□ -0.5
SQSTM1-215ENST00000514093 RPL39P62891 51 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-215ENST00000514093 FAM231DQ6ZW35 169 aa11.92□□□□□ -0.5
SQSTM1-215ENST00000514093 TIMM21Q9BVV7 248 aa11.92□□□□□ -0.5
SQSTM1-215ENST00000514093 TYMSOSQ8TAI1 123 aa11.91□□□□□ -0.5
SQSTM1-215ENST00000514093 HIGD1CA8MV81 97 aa11.9□□□□□ -0.5
SQSTM1-215ENST00000514093 TMEM18Q96B42 140 aa11.9□□□□□ -0.5
SQSTM1-215ENST00000514093 KIAA0087Q14695 138 aa11.89□□□□□ -0.51
SQSTM1-215ENST00000514093 C2orf82Q6UX34 121 aa11.89□□□□□ -0.51
SQSTM1-215ENST00000514093 CDIP1Q9H305 208 aa11.89□□□□□ -0.51
SQSTM1-215ENST00000514093 CT83Q5H943 113 aa11.88□□□□□ -0.51
SQSTM1-215ENST00000514093 CTDSP1Q9GZU7 261 aa11.88□□□□□ -0.51
SQSTM1-215ENST00000514093 NDUFC2-KCTD14E9PQ53 114 aa11.87□□□□□ -0.51
SQSTM1-215ENST00000514093 ANAPC11Q9NYG5 84 aa11.87□□□□□ -0.51
SQSTM1-215ENST00000514093 FSIP2Q5CZC0 6907 aa11.86□□□□□ -0.51
SQSTM1-215ENST00000514093 IFITM10A6NMD0 228 aa11.86□□□□□ -0.51
SQSTM1-215ENST00000514093 CRYGAP11844 174 aa11.86□□□□□ -0.51
SQSTM1-215ENST00000514093 PPP1R17O96001 155 aa11.85□□□□□ -0.51
SQSTM1-215ENST00000514093 TAGLN2P37802 199 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-215ENST00000514093 C22orf24Q9Y442 160 aa11.85□□□□□ -0.51
SQSTM1-215ENST00000514093 TRBV30A0A0K0K1B3 111 aa11.84□□□□□ -0.51
SQSTM1-215ENST00000514093 NUPR1O60356 82 aa11.84□□□□□ -0.51
SQSTM1-215ENST00000514093 CEBPGP53567 150 aa11.84□□□□□ -0.51
SQSTM1-215ENST00000514093 HBBP68871 147 aa11.84□□□□□ -0.51
SQSTM1-215ENST00000514093 RGS21Q2M5E4 152 aa11.84□□□□□ -0.51
SQSTM1-215ENST00000514093 LINC00469Q8N7U9 141 aa11.84□□□□□ -0.51
SQSTM1-215ENST00000514093 PACRGQ96M98 296 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-215ENST00000514093 TGIF2-C20orf24A0A0A6YYL0 155 aa11.83□□□□□ -0.52
SQSTM1-215ENST00000514093 PPP1R2P9O14990 202 aa11.83□□□□□ -0.52
SQSTM1-215ENST00000514093 MRPL51Q4U2R6 128 aaKnown RBP11.82□□□□□ -0.52
SQSTM1-215ENST00000514093 MRPS36P82909 103 aaKnown RBP11.81□□□□□ -0.52
SQSTM1-215ENST00000514093 RIGQ13278 110 aa11.81□□□□□ -0.52
SQSTM1-215ENST00000514093 KRTAP13-2Q52LG2 175 aa11.81□□□□□ -0.52
SQSTM1-215ENST00000514093 SPANXA1Q9NS26 97 aa11.81□□□□□ -0.52
SQSTM1-215ENST00000514093 RPL28P46779 137 aaKnown RBP11.8□□□□□ -0.52
SQSTM1-215ENST00000514093 TPRXLQ17RH7 258 aa11.8□□□□□ -0.52
SQSTM1-215ENST00000514093 IGLV7-46A0A075B6I9 117 aa11.79□□□□□ -0.52
SQSTM1-215ENST00000514093 TMEM250H0YL14 139 aa11.79□□□□□ -0.52
SQSTM1-215ENST00000514093 LINC00242Q5T6M2 205 aa11.79□□□□□ -0.52
SQSTM1-215ENST00000514093 XAGE1AQ9HD64 81 aa11.79□□□□□ -0.52
SQSTM1-215ENST00000514093 ZNF727A8MUV8 499 aa11.78□□□□□ -0.52
SQSTM1-215ENST00000514093 LBHQ53QV2 105 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-215ENST00000514093 LCE2DQ5TA82 110 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-215ENST00000514093 C20orf78Q9BR46 151 aa11.78□□□□□ -0.52
SQSTM1-215ENST00000514093 CRCT1Q9UGL9 99 aa11.78□□□□□ -0.52
SQSTM1-215ENST00000514093 TCAPO15273 167 aa11.77□□□□□ -0.53
SQSTM1-215ENST00000514093 FAM104BQ5XKR9 115 aa11.77□□□□□ -0.53
SQSTM1-215ENST00000514093 LINC01551Q86U37 167 aa11.77□□□□□ -0.53
SQSTM1-215ENST00000514093 BCE1O60756 84 aa11.76□□□□□ -0.53
SQSTM1-215ENST00000514093 CKS2P33552 79 aa11.76□□□□□ -0.53
SQSTM1-215ENST00000514093 LINC00173Q6ZV60 143 aa11.76□□□□□ -0.53
SQSTM1-215ENST00000514093 LINC00304Q8N9R0 145 aa11.76□□□□□ -0.53
SQSTM1-215ENST00000514093 OSTCQ9NRP0 149 aa11.76□□□□□ -0.53
SQSTM1-215ENST00000514093 TRBV24-1A0A075B6N3 115 aa11.75□□□□□ -0.53
SQSTM1-215ENST00000514093 TNFRSF6BO95407 300 aa11.75□□□□□ -0.53
SQSTM1-215ENST00000514093 RPL32P62910 135 aaKnown RBP11.74□□□□□ -0.53
SQSTM1-215ENST00000514093 MRPL55Q7Z7F7 128 aaKnown RBP11.74□□□□□ -0.53
SQSTM1-215ENST00000514093 SMIM7Q9BQ49 75 aa11.74□□□□□ -0.53
SQSTM1-215ENST00000514093 SMIM2Q9BVW6 85 aa11.74□□□□□ -0.53
SQSTM1-215ENST00000514093 TOMM7Q9P0U1 55 aa11.74□□□□□ -0.53
SQSTM1-215ENST00000514093 V9GYV3 84 aa11.74□□□□□ -0.53
SQSTM1-215ENST00000514093 LINC00862A6NCI5 91 aa11.73□□□□□ -0.53
SQSTM1-215ENST00000514093 RPL37AP8A6NKH3 93 aa11.72□□□□□ -0.53
SQSTM1-215ENST00000514093 BATF3Q9NR55 127 aa11.72□□□□□ -0.53
SQSTM1-215ENST00000514093 IGLV4-3A0A075B6K6 122 aa11.71□□□□□ -0.53
SQSTM1-215ENST00000514093 PRSS2P07478 247 aa11.71□□□□□ -0.53
SQSTM1-215ENST00000514093 IFI27P40305 119 aaPredicted RBP11.71□□□□□ -0.53
SQSTM1-215ENST00000514093 CKS1BP61024 79 aa11.71□□□□□ -0.53
SQSTM1-215ENST00000514093 SLC51BQ86UW2 128 aa11.71□□□□□ -0.53
SQSTM1-215ENST00000514093 NPYP01303 97 aa11.7□□□□□ -0.54
SQSTM1-215ENST00000514093 LINC00167Q96N53 147 aa11.7□□□□□ -0.54
SQSTM1-215ENST00000514093 PPDPFQ9H3Y8 114 aa11.7□□□□□ -0.54
SQSTM1-215ENST00000514093 NAT8BQ9UHF3 227 aa11.7□□□□□ -0.54
SQSTM1-215ENST00000514093 D6R8Y8 96 aa11.69□□□□□ -0.54
SQSTM1-215ENST00000514093 LINC01547P58512 204 aaPredicted RBP11.69□□□□□ -0.54
SQSTM1-215ENST00000514093 ZC2HC1BQ5TFG8 222 aa11.69□□□□□ -0.54
SQSTM1-215ENST00000514093 TP73-AS1Q9UF72 201 aa11.69□□□□□ -0.54
SQSTM1-215ENST00000514093 GAGE10A6NGK3 116 aa11.68□□□□□ -0.54
SQSTM1-215ENST00000514093 C6orf226Q5I0X4 101 aa11.68□□□□□ -0.54
SQSTM1-215ENST00000514093 LINC01561Q8N1V8 128 aa11.67□□□□□ -0.54
SQSTM1-215ENST00000514093 TMEM141Q96I45 108 aa11.67□□□□□ -0.54
SQSTM1-215ENST00000514093 FAM74A3Q4VXF1 159 aa11.66□□□□□ -0.54
SQSTM1-215ENST00000514093 Q6ZN92 141 aa11.66□□□□□ -0.54
SQSTM1-215ENST00000514093 PYGO1Q9Y3Y4 419 aa11.66□□□□□ -0.54
SQSTM1-215ENST00000514093 IGKV2D-26A0A0A0MRZ7 120 aa11.65□□□□□ -0.54
SQSTM1-215ENST00000514093 UBE2AP49459 152 aa11.65□□□□□ -0.54
SQSTM1-215ENST00000514093 FAM229BQ4G0N7 80 aa11.65□□□□□ -0.54
SQSTM1-215ENST00000514093 TEX43Q6ZNM6 134 aa11.65□□□□□ -0.54
SQSTM1-215ENST00000514093 KRTAP13-1Q8IUC0 172 aa11.65□□□□□ -0.54
SQSTM1-215ENST00000514093 ALKBH7Q9BT30 221 aaPredicted RBP11.65□□□□□ -0.54
SQSTM1-215ENST00000514093 EIF5A2Q9GZV4 153 aaKnown RBP11.65□□□□□ -0.54
SQSTM1-215ENST00000514093 RAB5AP20339 215 aa11.64□□□□□ -0.55
SQSTM1-215ENST00000514093 BLOC1S1P78537 153 aa11.63□□□□□ -0.55
SQSTM1-215ENST00000514093 Q8IZM0 81 aa11.63□□□□□ -0.55
SQSTM1-215ENST00000514093 ALKAL2Q6UX46 152 aa11.62□□□□□ -0.55
SQSTM1-215ENST00000514093 C2orf88Q9BSF0 95 aa11.62□□□□□ -0.55
SQSTM1-215ENST00000514093 KRTAP4-1Q9BYQ7 146 aa11.62□□□□□ -0.55
SQSTM1-215ENST00000514093 SMIM27A0A1W2PRY6 76 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 365.3 ms