RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 PRSS1P07477 247 aa11.98□□□□□ -0.49
SQSTM1-209ENST00000504627 JOSD1Q15040 202 aaPredicted RBP11.98□□□□□ -0.49
SQSTM1-209ENST00000504627 PMVKQ15126 192 aa11.98□□□□□ -0.49
SQSTM1-209ENST00000504627 H0Y8G0 127 aa11.97□□□□□ -0.49
SQSTM1-209ENST00000504627 MPV17L2Q567V2 206 aa11.97□□□□□ -0.49
SQSTM1-209ENST00000504627 LINC01545Q5VT33 79 aa11.97□□□□□ -0.49
SQSTM1-209ENST00000504627 TEX43Q6ZNM6 134 aa11.97□□□□□ -0.49
SQSTM1-209ENST00000504627 FAM104AQ969W3 186 aa11.97□□□□□ -0.49
SQSTM1-209ENST00000504627 AMELXQ99217 191 aa11.97□□□□□ -0.49
SQSTM1-209ENST00000504627 A0A087WX48 190 aa11.96□□□□□ -0.49
SQSTM1-209ENST00000504627 TMEM262E9PQX1 116 aa11.96□□□□□ -0.49
SQSTM1-209ENST00000504627 RBX1P62877 108 aa11.96□□□□□ -0.49
SQSTM1-209ENST00000504627 ODF1Q14990 250 aa11.96□□□□□ -0.49
SQSTM1-209ENST00000504627 C2orf88Q9BSF0 95 aa11.96□□□□□ -0.49
SQSTM1-209ENST00000504627 VCX2Q9H322 139 aa11.96□□□□□ -0.49
SQSTM1-209ENST00000504627 CDC42SE2Q9NRR3 84 aa11.96□□□□□ -0.49
SQSTM1-209ENST00000504627 SMIM6P0DI80 62 aa11.95□□□□□ -0.5
SQSTM1-209ENST00000504627 ZNF664Q8N3J9 261 aa11.95□□□□□ -0.5
SQSTM1-209ENST00000504627 Q8N976 141 aa11.95□□□□□ -0.5
SQSTM1-209ENST00000504627 OPRPNQ99935 248 aaPredicted RBP11.95□□□□□ -0.5
SQSTM1-209ENST00000504627 CST9LQ9H4G1 147 aa11.95□□□□□ -0.5
SQSTM1-209ENST00000504627 F8VRH5 84 aa11.94□□□□□ -0.5
SQSTM1-209ENST00000504627 PYY3Q5JQD4 70 aa11.94□□□□□ -0.5
SQSTM1-209ENST00000504627 COX11Q9Y6N1 276 aa11.94□□□□□ -0.5
SQSTM1-209ENST00000504627 FAT1Q14517 4588 aa11.94□□□□□ -0.5
SQSTM1-209ENST00000504627 IGLV4-60A0A075B6I1 120 aa11.93□□□□□ -0.5
SQSTM1-209ENST00000504627 SCGB1D1O95968 90 aa11.93□□□□□ -0.5
SQSTM1-209ENST00000504627 RMI2Q96E14 147 aa11.93□□□□□ -0.5
SQSTM1-209ENST00000504627 SMR3BP02814 79 aaPredicted RBP11.92□□□□□ -0.5
SQSTM1-209ENST00000504627 RNASE13Q5GAN3 156 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-209ENST00000504627 Q5VSD8 79 aa11.92□□□□□ -0.5
SQSTM1-209ENST00000504627 KLK12Q9UKR0 248 aa11.92□□□□□ -0.5
SQSTM1-209ENST00000504627 CHTOPQ9Y3Y2 248 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-209ENST00000504627 LECT2O14960 151 aa11.91□□□□□ -0.5
SQSTM1-209ENST00000504627 PLNP26678 52 aa11.91□□□□□ -0.5
SQSTM1-209ENST00000504627 HAMPP81172 84 aa11.91□□□□□ -0.5
SQSTM1-209ENST00000504627 ZC2HC1BQ5TFG8 222 aa11.91□□□□□ -0.5
SQSTM1-209ENST00000504627 MRPL35Q9NZE8 188 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-209ENST00000504627 IGKV2D-24A0A075B6R9 120 aa11.9□□□□□ -0.5
SQSTM1-209ENST00000504627 INAFM2P0DMQ5 153 aa11.9□□□□□ -0.5
SQSTM1-209ENST00000504627 WFDC2Q14508 124 aa11.9□□□□□ -0.5
SQSTM1-209ENST00000504627 IGLV4-69A0A075B6H9 119 aa11.89□□□□□ -0.51
SQSTM1-209ENST00000504627 DPM2O94777 84 aa11.89□□□□□ -0.51
SQSTM1-209ENST00000504627 UBE2D1P51668 147 aa11.89□□□□□ -0.51
SQSTM1-209ENST00000504627 UBE2WQ96B02 151 aa11.89□□□□□ -0.51
SQSTM1-209ENST00000504627 PMCHL2Q9BQD1 86 aa11.89□□□□□ -0.51
SQSTM1-209ENST00000504627 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.88□□□□□ -0.51
SQSTM1-209ENST00000504627 FAM229AH3BQW9 127 aa11.88□□□□□ -0.51
SQSTM1-209ENST00000504627 ANGP03950 147 aaKnown RBP11.88□□□□□ -0.51
SQSTM1-209ENST00000504627 IGLC3P0DOY3 106 aa11.88□□□□□ -0.51
SQSTM1-209ENST00000504627 FAM19A3Q7Z5A8 133 aa11.88□□□□□ -0.51
SQSTM1-209ENST00000504627 IGKCP01834 107 aa11.87□□□□□ -0.51
SQSTM1-209ENST00000504627 SEC11AP67812 179 aa11.87□□□□□ -0.51
SQSTM1-209ENST00000504627 CHAC1Q9BUX1 264 aa11.87□□□□□ -0.51
SQSTM1-209ENST00000504627 CCL25O15444 150 aa11.86□□□□□ -0.51
SQSTM1-209ENST00000504627 PRR34Q9NV39 138 aa11.86□□□□□ -0.51
SQSTM1-209ENST00000504627 DNAH8Q96JB1 4490 aa11.86□□□□□ -0.51
SQSTM1-209ENST00000504627 TRAV13-1A0A0B4J241 112 aa11.85□□□□□ -0.51
SQSTM1-209ENST00000504627 TINCRA0A1B0GVN0 87 aa11.85□□□□□ -0.51
SQSTM1-209ENST00000504627 C11orf86A6NJI1 115 aa11.85□□□□□ -0.51
SQSTM1-209ENST00000504627 REG3AQ06141 175 aa11.85□□□□□ -0.51
SQSTM1-209ENST00000504627 LINC00269Q8N2A0 174 aa11.85□□□□□ -0.51
SQSTM1-209ENST00000504627 A0A0J9YXV3 536 aa11.84□□□□□ -0.51
SQSTM1-209ENST00000504627 CRPP02741 224 aa11.84□□□□□ -0.51
SQSTM1-209ENST00000504627 HERVK_113P63121 156 aa11.84□□□□□ -0.51
SQSTM1-209ENST00000504627 FAM30AQ9NZY2 134 aa11.84□□□□□ -0.51
SQSTM1-209ENST00000504627 VPS13BQ7Z7G8 4022 aa11.83□□□□□ -0.51
SQSTM1-209ENST00000504627 LINC00959A0A1B0GUT2 108 aa11.83□□□□□ -0.52
SQSTM1-209ENST00000504627 CLPSL2Q6UWE3 100 aa11.83□□□□□ -0.52
SQSTM1-209ENST00000504627 ATOH7Q8N100 152 aa11.83□□□□□ -0.52
SQSTM1-209ENST00000504627 C1orf43Q9BWL3 253 aa11.83□□□□□ -0.52
SQSTM1-209ENST00000504627 GEMIN7Q9H840 131 aaKnown RBP11.83□□□□□ -0.52
SQSTM1-209ENST00000504627 IGLV5-45A0A087WSX0 123 aa11.82□□□□□ -0.52
SQSTM1-209ENST00000504627 IGKV3OR2-268A0A0C4DH90 116 aa11.82□□□□□ -0.52
SQSTM1-209ENST00000504627 SS18Q15532 418 aa11.82□□□□□ -0.52
SQSTM1-209ENST00000504627 LINC00242Q5T6M2 205 aa11.82□□□□□ -0.52
SQSTM1-209ENST00000504627 HSBP1L1C9JCN9 74 aa11.81□□□□□ -0.52
SQSTM1-209ENST00000504627 ZNF22P17026 224 aaPredicted RBP11.81□□□□□ -0.52
SQSTM1-209ENST00000504627 MIAQ16674 131 aa11.81□□□□□ -0.52
SQSTM1-209ENST00000504627 C12orf57Q99622 126 aa11.81□□□□□ -0.52
SQSTM1-209ENST00000504627 VAMP8Q9BV40 100 aa11.81□□□□□ -0.52
SQSTM1-209ENST00000504627 TRAV8-4A0A0B4J246 113 aa11.8□□□□□ -0.52
SQSTM1-209ENST00000504627 S100A12P80511 92 aa11.8□□□□□ -0.52
SQSTM1-209ENST00000504627 LINC00518Q8N0U6 118 aa11.8□□□□□ -0.52
SQSTM1-209ENST00000504627 HERVK_113P61574 105 aa11.79□□□□□ -0.52
SQSTM1-209ENST00000504627 LINC01620Q4KN68 170 aa11.79□□□□□ -0.52
SQSTM1-209ENST00000504627 TMEM170BQ5T4T1 132 aa11.79□□□□□ -0.52
SQSTM1-209ENST00000504627 ENHOQ6UWT2 76 aa11.79□□□□□ -0.52
SQSTM1-209ENST00000504627 LINC00469Q8N7U9 141 aa11.79□□□□□ -0.52
SQSTM1-209ENST00000504627 SRRM2Q9UQ35 2752 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-209ENST00000504627 H3BRM9 83 aa11.78□□□□□ -0.52
SQSTM1-209ENST00000504627 C14orf177Q52M58 125 aa11.78□□□□□ -0.52
SQSTM1-209ENST00000504627 hDV102S1A0JD36 115 aa11.77□□□□□ -0.53
SQSTM1-209ENST00000504627 Q6ZSA8 131 aa11.77□□□□□ -0.53
SQSTM1-209ENST00000504627 CHCHD10Q8WYQ3 142 aaPredicted RBP11.77□□□□□ -0.53
SQSTM1-209ENST00000504627 IGHV3OR16-9A0A0B4J2B5 98 aa11.76□□□□□ -0.53
SQSTM1-209ENST00000504627 COX6A2Q02221 97 aa11.76□□□□□ -0.53
SQSTM1-209ENST00000504627 CD164L2Q6UWJ8 174 aa11.76□□□□□ -0.53
SQSTM1-209ENST00000504627 CDKN2A-AS1Q9UH64 79 aa11.76□□□□□ -0.53
SQSTM1-209ENST00000504627 PAM16Q9Y3D7 125 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms