RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C11orf44Q8N8P7 122 aa11.55□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 TRBV30A0A0K0K1B3 111 aa11.54□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 CDKN2A-AS1Q9UH64 79 aa11.54□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 IGLV5-45A0A087WSX0 123 aa11.54□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 TRIAP1O43715 76 aa11.54□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 Q1RN00 199 aa11.54□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 TIRAPP58753 221 aa11.53□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 A0A1B0GX51 115 aa11.52□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 HILS1P60008 231 aa11.52□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 LINC01600Q96MT4 127 aa11.52□□□□□ -0.56
MSH5-SAPCD1-208ENST00000498473 IGHV3OR16-12A0A075B7B8 117 aa11.52□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 COX6A2Q02221 97 aa11.52□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 TMEM101Q96IK0 257 aa11.52□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 J3KT08 172 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 LINC00694P0DN24 101 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 NPC2P61916 151 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 ATXN8Q156A1 80 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 LINC01620Q4KN68 170 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 TMEM86BQ8N661 226 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 PRIMA1Q86XR5 153 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 STHQ8IWL8 128 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 C15orf53Q8NAA6 179 aa11.51□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 TIMM17BO60830 172 aa11.5□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 TRGV1A0A0A0MS02 117 aa11.5□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 ICOSQ9Y6W8 199 aa11.5□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 NDUFA1O15239 70 aa11.49□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 RPS28P62857 69 aaKnown RBP11.49□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 TRAV8-4A0A0B4J246 113 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRX2 142 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 RPL13AP40429 203 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 LINC00242Q5T6M2 205 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 DGAT2L7PQ6IED9 249 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 NTM-AS1Q6ZSK4 140 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 OR13C6PQ8NH95 151 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 IGLV5-39A0A0G2JS06 123 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 Q6ZTI0 123 aa11.48□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 PKD1L1Q8TDX9 2849 aa11.47□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 CCL24O00175 119 aa11.47□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 FAM19A3Q7Z5A8 133 aa11.47□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 DAND5Q8N907 189 aa11.47□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 NDUFA7O95182 113 aa11.47□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 FAM19A5Q7Z5A7 132 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 TRBV10-2A0A0K0K1G8 114 aa11.46□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 K7EQD1 137 aa11.46□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 RNASE1P07998 156 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 NTN5Q8WTR8 489 aaPredicted RBP11.46□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 NOTCH3Q9UM47 2321 aa11.46□□□□□ -0.57
MSH5-SAPCD1-208ENST00000498473 TRBV7-7A0A0K0K1E9 115 aa11.45□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 HERVK_113P63121 156 aa11.45□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 TRBV10-1A0A0K0K1A3 114 aa11.45□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 RPL36AP83881 106 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 RPL36ALQ969Q0 106 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 GIG44P09565 113 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 CHCHD5Q9BSY4 110 aa11.44□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 LINC01006Q8NI28 216 aa11.44□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 SMIM1B2RUZ4 78 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 DAZ2Q13117 558 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 DAZ4Q86SG3 579 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 Q9H8V8 135 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 DAZ3Q9NR90 486 aaKnown RBP11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 LOC107984640A0A0U1RRK4 108 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 FAM240AA0A1B0GVK7 77 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 H7C423 109 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 C3orf22Q8N5N4 141 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 CLEC2BQ92478 149 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 IMUPQ9GZP8 106 aa11.43□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 LINC00308Q8TCZ7 52 aa11.42□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 CDC42SE2Q9NRR3 84 aa11.42□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 TEX49A0A1B0GTD5 131 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 PLAC8L1A1L4L8 177 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 C9orf153Q5TBE3 101 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 NOP10Q9NPE3 64 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 TRAV13-1A0A0B4J241 112 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 F5H768 121 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 UQCRQO14949 82 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 COX6CP09669 75 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 KRTAP24-1Q3LI83 254 aa11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 ZNF625Q96I27 306 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 LST1O00453 97 aa11.4□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 CIRBPQ14011 172 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 KRTAP10-3P60369 221 aa11.4□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 SOSTDC1Q6X4U4 206 aa11.4□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 C3orf56Q8N813 242 aa11.4□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 LINC00526Q96FQ7 95 aa11.4□□□□□ -0.58
MSH5-SAPCD1-208ENST00000498473 C2orf82Q6UX34 121 aa11.39□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 WFDC10AQ9H1F0 79 aa11.39□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 A0A0U1RRA0 63 aa11.38□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 ATP5G1P05496 136 aa11.38□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 H3BT86 120 aa11.37□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 MRAPQ8TCY5 172 aa11.37□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 UBE2WQ96B02 151 aa11.37□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 C19orf73Q9NVV2 129 aa11.37□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 LOC100131303A0A0U1RQF7 123 aa11.36□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 TMEM243Q9BU79 118 aa11.36□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 CSNK1G2-AS1Q8NCQ2 148 aa11.35□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 C16orf74Q96GX8 76 aa11.35□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 RPL35AP18077 110 aaKnown RBP11.35□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 CMC4P56277 68 aaPredicted RBP11.35□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 IGLV1-51P01701 117 aa11.34□□□□□ -0.59
MSH5-SAPCD1-208ENST00000498473 OVOL2Q9BRP0 275 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 153.2 ms