RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 A6NJY4 79 aa13.39□□□□□ -0.27
CCM2-216ENST00000488727 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.39□□□□□ -0.27
CCM2-216ENST00000488727 A0A096LPF7 62 aa13.39□□□□□ -0.27
CCM2-216ENST00000488727 IGHV3-38A0A0C4DH36 116 aa13.39□□□□□ -0.27
CCM2-216ENST00000488727 TINCRA0A1B0GVN0 87 aa13.39□□□□□ -0.27
CCM2-216ENST00000488727 IGKV2-29A2NJV5 120 aaPredicted RBP13.39□□□□□ -0.27
CCM2-216ENST00000488727 RPL36AP83881 106 aaKnown RBP13.39□□□□□ -0.27
CCM2-216ENST00000488727 RPL36ALQ969Q0 106 aaKnown RBP13.39□□□□□ -0.27
CCM2-216ENST00000488727 SPCS1Q9Y6A9 102 aa13.39□□□□□ -0.27
CCM2-216ENST00000488727 LYSTQ99698 3801 aa13.38□□□□□ -0.27
CCM2-216ENST00000488727 GYPEP15421 78 aa13.37□□□□□ -0.27
CCM2-216ENST00000488727 Q6ZUT4 128 aa13.37□□□□□ -0.27
CCM2-216ENST00000488727 DAZ4Q86SG3 579 aaKnown RBP13.37□□□□□ -0.27
CCM2-216ENST00000488727 DAZ3Q9NR90 486 aaKnown RBP13.37□□□□□ -0.27
CCM2-216ENST00000488727 SRSF9Q13242 221 aaKnown RBP eCLIP13.36□□□□□ -0.27
CCM2-216ENST00000488727 UBE2D1P51668 147 aa13.36□□□□□ -0.27
CCM2-216ENST00000488727 UBE2D3P61077 147 aa13.36□□□□□ -0.27
CCM2-216ENST00000488727 UBE2D2P62837 147 aa13.36□□□□□ -0.27
CCM2-216ENST00000488727 ICOSQ9Y6W8 199 aa13.36□□□□□ -0.27
CCM2-216ENST00000488727 MRPL23Q16540 153 aaKnown RBP13.34□□□□□ -0.27
CCM2-216ENST00000488727 IGHV3-30P01768 117 aa13.33□□□□□ -0.27
CCM2-216ENST00000488727 IGHV3-30-5P0DP03 117 aa13.33□□□□□ -0.27
CCM2-216ENST00000488727 CSDC2Q9Y534 153 aaKnown RBP13.33□□□□□ -0.27
CCM2-216ENST00000488727 IGHV1-58A0A0C4DH39 117 aa13.33□□□□□ -0.28
CCM2-216ENST00000488727 IGLV5-45A0A087WSX0 123 aa13.32□□□□□ -0.28
CCM2-216ENST00000488727 IGHV3-30-3P0DP02 117 aa13.32□□□□□ -0.28
CCM2-216ENST00000488727 TIRAPP58753 221 aa13.32□□□□□ -0.28
CCM2-216ENST00000488727 SMAGPQ0VAQ4 97 aa13.32□□□□□ -0.28
CCM2-216ENST00000488727 RNASE13Q5GAN3 156 aaKnown RBP13.32□□□□□ -0.28
CCM2-216ENST00000488727 LINC00476Q8WZB0 136 aa13.32□□□□□ -0.28
CCM2-216ENST00000488727 LINC00694P0DN24 101 aa13.31□□□□□ -0.28
CCM2-216ENST00000488727 FAM19A3Q7Z5A8 133 aa13.31□□□□□ -0.28
CCM2-216ENST00000488727 GTSF1LQ9H1H1 148 aa13.31□□□□□ -0.28
CCM2-216ENST00000488727 KMT2CQ8NEZ4 4911 aaKnown RBP13.31□□□□□ -0.28
CCM2-216ENST00000488727 GAGE12JA6NER3 117 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 GAGE4Q13068 117 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 GAGE5Q13069 117 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 GAGE13Q4V321 117 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 NTM-AS1Q6ZSK4 140 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 ESRGQ1W209 222 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 DGAT2L7PQ6IED9 249 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 ALMS1Q8TCU4 4167 aa13.3□□□□□ -0.28
CCM2-216ENST00000488727 IGHV3-64A0A075B6Q5 118 aa13.29□□□□□ -0.28
CCM2-216ENST00000488727 C10orf126Q8N4M7 172 aa13.29□□□□□ -0.28
CCM2-216ENST00000488727 TMEM238C9JI98 176 aa13.28□□□□□ -0.28
CCM2-216ENST00000488727 LY6G6CO95867 125 aa13.28□□□□□ -0.28
CCM2-216ENST00000488727 GEMIN7Q9H840 131 aaKnown RBP13.28□□□□□ -0.28
CCM2-216ENST00000488727 LINC00588Q9Y4M8 146 aa13.28□□□□□ -0.28
CCM2-216ENST00000488727 A0A0J9YXY3 114 aa13.27□□□□□ -0.28
CCM2-216ENST00000488727 LCE6AA0A183 80 aa13.27□□□□□ -0.28
CCM2-216ENST00000488727 DNAH1Q9P2D7 4330 aa13.27□□□□□ -0.28
CCM2-216ENST00000488727 VPS13DQ5THJ4 4388 aa13.27□□□□□ -0.28
CCM2-216ENST00000488727 OCIAD2Q56VL3 154 aa13.27□□□□□ -0.29
CCM2-216ENST00000488727 LYPD5Q6UWN5 251 aa13.27□□□□□ -0.29
CCM2-216ENST00000488727 TRAV8-3A0A0A6YYJ7 113 aa13.26□□□□□ -0.29
CCM2-216ENST00000488727 H7C423 109 aa13.26□□□□□ -0.29
CCM2-216ENST00000488727 CCL18P55774 89 aa13.26□□□□□ -0.29
CCM2-216ENST00000488727 SH2D6Q7Z4S9 175 aa13.26□□□□□ -0.29
CCM2-216ENST00000488727 ATP6V0E2Q8NHE4 81 aa13.26□□□□□ -0.29
CCM2-216ENST00000488727 PGPEP1Q9NXJ5 209 aa13.26□□□□□ -0.29
CCM2-216ENST00000488727 HERVK_113P63121 156 aa13.25□□□□□ -0.29
CCM2-216ENST00000488727 UBE2DNLQ8IWF7 75 aa13.25□□□□□ -0.29
CCM2-216ENST00000488727 SACSQ9NZJ4 4579 aa13.25□□□□□ -0.29
CCM2-216ENST00000488727 TMEM243Q9BU79 118 aa13.25□□□□□ -0.29
CCM2-216ENST00000488727 SPINK8P0C7L1 97 aa13.24□□□□□ -0.29
CCM2-216ENST00000488727 TSPAN13O95857 204 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 CFC1BP0CG36 223 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 CFC1P0CG37 223 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 RBX1P62877 108 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 LINC00242Q5T6M2 205 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 LITAFQ99732 161 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 CDC42SE2Q9NRR3 84 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 CDKN2A-AS1Q9UH64 79 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 NDUFA12Q9UI09 145 aa13.23□□□□□ -0.29
CCM2-216ENST00000488727 APOMO95445 188 aa13.22□□□□□ -0.29
CCM2-216ENST00000488727 RPL24P83731 157 aaKnown RBP13.22□□□□□ -0.29
CCM2-216ENST00000488727 SPANXDQ9BXN6 97 aa13.22□□□□□ -0.29
CCM2-216ENST00000488727 SPANXCQ9NY87 97 aa13.22□□□□□ -0.29
CCM2-216ENST00000488727 HYDINQ4G0P3 5121 aa13.21□□□□□ -0.29
CCM2-216ENST00000488727 IGLV5-39A0A0G2JS06 123 aa13.21□□□□□ -0.3
CCM2-216ENST00000488727 K7ERU9 68 aa13.21□□□□□ -0.3
CCM2-216ENST00000488727 TIMM17BO60830 172 aa13.21□□□□□ -0.3
CCM2-216ENST00000488727 A0A0B4J2C4 111 aa13.2□□□□□ -0.3
CCM2-216ENST00000488727 UBE2L6O14933 153 aa13.2□□□□□ -0.3
CCM2-216ENST00000488727 LYRM7Q5U5X0 104 aa13.2□□□□□ -0.3
CCM2-216ENST00000488727 MUSTN1Q8IVN3 82 aa13.2□□□□□ -0.3
CCM2-216ENST00000488727 TMEM101Q96IK0 257 aa13.2□□□□□ -0.3
CCM2-216ENST00000488727 UPK3BQ9BT76 320 aa13.2□□□□□ -0.3
CCM2-216ENST00000488727 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.19□□□□□ -0.3
CCM2-216ENST00000488727 A4D1N5 150 aa13.19□□□□□ -0.3
CCM2-216ENST00000488727 F8W1H4 67 aa13.19□□□□□ -0.3
CCM2-216ENST00000488727 NDUFA1O15239 70 aa13.19□□□□□ -0.3
CCM2-216ENST00000488727 COX6A2Q02221 97 aa13.19□□□□□ -0.3
CCM2-216ENST00000488727 PRO1854Q9UHT4 67 aa13.19□□□□□ -0.3
CCM2-216ENST00000488727 CBY1Q9Y3M2 126 aa13.18□□□□□ -0.3
CCM2-216ENST00000488727 KMT2AQ03164 3969 aa13.18□□□□□ -0.3
CCM2-216ENST00000488727 LELP1Q5T871 98 aa13.17□□□□□ -0.3
CCM2-216ENST00000488727 WFDC10BQ8IUB3 73 aa13.17□□□□□ -0.3
CCM2-216ENST00000488727 RYR2Q92736 4967 aa13.17□□□□□ -0.3
CCM2-216ENST00000488727 MIAQ16674 131 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms